Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Migut.E01443 Erythranthe guttata HOM05D004383 ORTHO05D005050 1.8e-99 365.9 181 100.0
MSTRG.13961 Avicennia marina HOM05D004383 ORTHO05D005050 1.3e-91 339.7 181 92.3
SGA_v2.0_scaffold169G38599 Striga asiatica HOM05D004383 ORTHO05D005050 1.3e-91 339.7 178 93.3
SGA_v2.0_scaffold4G02162 Striga asiatica HOM05D004383 ORTHO05D005050 1.3e-91 339.7 178 93.3
Cc00_g24580 Coffea canephora HOM05D004383 ORTHO05D005050 1.4e-85 319.7 176 88.1
Migut.A00383 Erythranthe guttata HOM05D004383 ORTHO05D005050 3.2e-85 318.5 178 88.2
Manes.16G131700 Manihot esculenta HOM05D004383 ORTHO05D005050 5.5e-85 317.8 181 85.1
Oeu010290.1 Olea europaea HOM05D004383 ORTHO05D005050 1.2e-84 316.6 181 85.1
Potri.018G016800 Populus trichocarpa HOM05D004383 ORTHO05D005050 1.2e-84 316.6 181 85.6
Gohir.D06G105600 Gossypium hirsutum HOM05D004383 ORTHO05D005050 3.6e-84 315.1 178 86.5
Gorai.009G064600 Gossypium raimondii HOM05D004383 ORTHO05D005050 3.6e-84 315.1 178 85.4
Manes.03G007300 Manihot esculenta HOM05D004383 ORTHO05D005050 3.6e-84 315.1 181 84.5
Thecc.09G012700 Theobroma cacao HOM05D004383 ORTHO05D005050 3.6e-84 315.1 178 86.5
COL.COLO4_18979 Corchorus olitorius HOM05D002641 ORTHO05D005050 6.1e-84 314.3 181 84.5
Duzib187G0841 Durio zibethinus HOM05D004383 ORTHO05D005050 1.0e-83 313.5 181 84.5
TWI32G1179 Tripterygium wilfordii HOM05D004383 ORTHO05D005050 1.0e-83 313.5 181 84.5
Gohir.A05G061400 Gossypium hirsutum HOM05D004383 ORTHO05D005050 1.4e-83 313.2 178 84.8
Hma1.2p1_0355F.1_g133920 Hydrangea macrophylla HOM05D004383 ORTHO05D005050 1.4e-83 313.2 181 84.5
Atru.chr7.2584 Acer truncatum HOM05D004383 ORTHO05D005050 1.8e-83 312.8 178 85.4
Peaxi162Scf00045g01943 Petunia axillaris HOM05D004383 ORTHO05D005050 1.8e-83 312.8 176 86.4
Gorai.010G120200 Gossypium raimondii HOM05D004383 ORTHO05D005050 2.3e-83 312.4 178 85.4
Potri.006G266300 Populus trichocarpa HOM05D004383 ORTHO05D005050 2.3e-83 312.4 178 85.4
Solyc08g006650.3 Solanum lycopersicum HOM05D004383 ORTHO05D005050 3.9e-83 311.6 176 87.5
Sopen08g002600 Solanum pennellii HOM05D004383 ORTHO05D005050 5.1e-83 311.2 176 87.5
PGSC0003DMG400026285 Solanum tuberosum HOM05D004383 ORTHO05D005050 5.1e-83 311.2 176 87.5
Gohir.D05G063900 Gossypium hirsutum HOM05D004383 ORTHO05D005050 8.8e-83 310.5 178 84.3
PGR044G2662 Punica granatum HOM05D004383 ORTHO05D005050 2.0e-82 309.3 181 83.4
Sed0012000 Sechium edule HOM05D004383 ORTHO05D005050 2.5e-82 308.9 181 82.3
CAN.G285.20 Capsicum annuum HOM05D004383 ORTHO05D005050 3.3e-82 308.5 176 85.8
Duzib168G1681 Durio zibethinus HOM05D004383 ORTHO05D005050 5.7e-82 307.8 177 84.7
CiPaw.08G004800 Carya illinoinensis HOM05D004383 ORTHO05D005050 7.4e-82 307.4 181 83.4
MELO3C016948.2 Cucumis melo HOM05D004383 ORTHO05D005050 7.4e-82 307.4 177 83.6
SalBow8G1520 Salvia bowleyana HOM05D004383 ORTHO05D005050 1.3e-81 306.6 168 89.3
Eucgr.C04036 Eucalyptus grandis HOM05D004383 ORTHO05D005050 1.7e-81 306.2 181 82.9
Lj7A737G42 Lonicera japonica HOM05D004383 ORTHO05D005050 1.7e-81 306.2 178 84.8
Nitab4.5_0000264g0060 Nicotiana tabacum HOM05D004383 ORTHO05D005050 2.2e-81 305.8 176 85.8
RcHm_v2.0_Chr6g0299241 Rosa chinensis HOM05D004383 ORTHO05D005050 2.8e-81 305.4 181 81.8
CsaV3_4G036420 Cucumis sativus L. HOM05D004383 ORTHO05D005050 4.8e-81 304.7 177 82.5
THA.LOC104824960 Tarenaya hassleriana HOM05D004383 ORTHO05D005050 6.3e-81 304.3 181 81.8
unitig_32.g11121 Utricularia gibba HOM05D004383 ORTHO05D005050 6.3e-81 304.3 168 89.9
Aa31LG3G16320 Aethionema arabicum HOM05D004383 ORTHO05D005050 8.2e-81 303.9 181 81.2
CSS0047262 Camellia sinensis var. sinensis HOM05D004383 ORTHO05D005050 8.2e-81 303.9 181 80.7
ClCG05G016150 Citrullus lanatus HOM05D004383 ORTHO05D005050 1.1e-80 303.5 177 83.1
Ah.12g060630 Amaranthus hybridus HOM05D004383 ORTHO05D005050 1.4e-80 303.1 175 83.4
EL10Ac2g02480 Beta vulgaris HOM05D004383 ORTHO05D005050 1.4e-80 303.1 176 82.4
FAN16G3501 Fragaria x ananassa HOM05D004383 ORTHO05D005050 1.4e-80 303.1 178 82.0
Hund25610 Selenicereus undatus HOM05D004383 ORTHO05D005050 1.4e-80 303.1 182 79.7
THA.LOC104799028 Tarenaya hassleriana HOM05D004383 ORTHO05D005050 1.4e-80 303.1 181 81.8
Carub.0006s0928 Capsella rubella HOM05D004383 ORTHO05D005050 1.8e-80 302.8 181 81.8
BcaB01g06278 Brassica carinata HOM05D004383 ORTHO05D005050 2.4e-80 302.4 181 81.2
CANSAT64G0435 Cannabis sativa HOM05D004383 ORTHO05D005050 3.1e-80 302.0 181 80.7
AUR62024788 Chenopodium quinoa HOM05D004383 ORTHO05D005050 3.1e-80 302.0 178 79.8
FvH4_3g24420 Fragaria vesca HOM05D004383 ORTHO05D005050 3.1e-80 302.0 178 81.5
Oeu021906.1 Olea europaea HOM05D004383 ORTHO05D005050 3.1e-80 302.0 168 88.7
Sp6g32680 Schrenkiella parvula HOM05D004383 ORTHO05D005050 3.1e-80 302.0 181 81.2
TWI34G1410 Tripterygium wilfordii HOM05D004383 ORTHO05D005050 3.1e-80 302.0 177 83.6
Thhalv10014802m.g Eutrema salsugineum HOM05D004383 ORTHO05D005050 4.1e-80 301.6 181 80.7
MD15G1042900 Malus domestica HOM05D004383 ORTHO05D005050 4.1e-80 301.6 178 82.6
Sed0009310 Sechium edule HOM05D004383 ORTHO05D005050 4.1e-80 301.6 181 81.2
GSVIVG01035992001 Vitis vinifera HOM05D004383 ORTHO05D005050 4.1e-80 301.6 178 83.7
arahy.Tifrunner.gnm1.ann1.S5PPFL Arachis hypogaea HOM05D004383 ORTHO05D005050 5.3e-80 301.2 178 82.0
CiPaw.07G231900 Carya illinoinensis HOM05D004383 ORTHO05D005050 5.3e-80 301.2 177 83.1
FAN21G1236 Fragaria x ananassa HOM05D004383 ORTHO05D005050 5.3e-80 301.2 178 81.5
BcaB01g05499 Brassica carinata HOM05D004383 ORTHO05D005050 6.9e-80 300.8 181 81.2
AUR62032433 Chenopodium quinoa HOM05D004383 ORTHO05D005050 6.9e-80 300.8 178 79.2
Prupe.1G396200 Prunus persica HOM05D004383 ORTHO05D005050 6.9e-80 300.8 178 81.5
AL6G21360 Arabidopsis lyrata HOM05D004383 ORTHO05D005050 9.1e-80 300.4 181 81.2
AT5G10780 Arabidopsis thaliana HOM05D004383 ORTHO05D005050 9.1e-80 300.4 181 81.2
arahy.Tifrunner.gnm1.ann1.W5C21C Arachis hypogaea HOM05D004383 ORTHO05D005050 1.2e-79 300.1 178 81.5
BcaB05g21506 Brassica carinata HOM05D004383 ORTHO05D005050 1.2e-79 300.1 181 80.1
CARHR202520 Cardamine hirsuta HOM05D004383 ORTHO05D005050 3.4e-79 298.5 181 80.1
Sabra18G0020200 Salix brachista HOM05D004383 ORTHO05D005050 3.4e-79 298.5 170 86.5
A03p04760 Brassica napus HOM05D004383 ORTHO05D005050 1.7e-78 296.2 182 80.2
BcaC03g13332 Brassica carinata HOM05D004383 ORTHO05D005050 2.2e-78 295.8 182 80.2
A02p00660 Brassica napus HOM05D004383 ORTHO05D005050 2.2e-78 295.8 182 80.2
C02p04660 Brassica napus HOM05D004383 ORTHO05D005050 2.2e-78 295.8 182 80.2
Phvul.001G042400 Phaseolus vulgaris HOM05D004383 ORTHO05D005050 3.8e-78 295.0 178 81.5
BraA02t05050Z Brassica rapa HOM05D004383 ORTHO05D005050 6.5e-78 294.3 182 79.7
ECA238G1890 Erigeron canadensis HOM05D004383 ORTHO05D005050 1.1e-77 293.5 181 79.6
Actinidia14139 Actinidia chinensis HOM05D004383 ORTHO05D005050 1.4e-77 293.1 181 80.1
BraA03t09816Z Brassica rapa HOM05D004383 ORTHO05D005050 1.4e-77 293.1 182 79.7
Sabra06G0208900 Salix brachista HOM05D004383 ORTHO05D005050 1.9e-77 292.7 169 85.2
VMungo0647G1739 Vigna mungo HOM05D004383 ORTHO05D005050 4.2e-77 291.6 178 80.3
Nn1g03128 Nelumbo nucifera HOM05D004383 ORTHO05D005050 7.2e-77 290.8 181 80.7
Nn3g19885 Nelumbo nucifera HOM05D004383 ORTHO05D005050 7.2e-77 290.8 181 77.9
Cpa.g.sc148.37 Carica papaya HOM05D004383 ORTHO05D005050 9.4e-77 290.4 177 81.9
Ca_13075_v3 Cicer arietinum L. HOM05D004383 ORTHO05D005050 1.2e-76 290.0 182 79.1
Ciclev10009603m.g Citrus clementina HOM05D004383 ORTHO05D005050 2.1e-76 289.3 166 84.9
Lsat_1_v5_gn_8_16540 Lactuca sativa HOM05D004383 ORTHO05D005050 2.1e-76 289.3 175 81.7
Medtr1g013660 Medicago truncatula HOM05D004383 ORTHO05D005050 2.1e-76 289.3 182 80.2
CSS0026414 Camellia sinensis var. sinensis HOM05D004383 ORTHO05D005050 2.7e-76 288.9 181 78.5
Glyma.17G222100 Glycine max HOM05D004383 ORTHO05D005050 3.6e-76 288.5 178 79.8
C03p05470 Brassica napus HOM05D004383 ORTHO05D005050 6.1e-76 287.7 174 80.5
Nitab4.5_0001362g0040 Nicotiana tabacum HOM05D004383 ORTHO05D005050 7.9e-76 287.3 169 83.4
Glyma.14G103800 Glycine max HOM05D004383 ORTHO05D005050 1.8e-75 286.2 178 79.2
QL02p018464 Quercus lobata HOM05D004383 ORTHO05D005050 1.8e-75 286.2 168 83.3
Lj6g0009294 Lotus japonicus HOM05D004383 ORTHO05D005050 2.3e-75 285.8 183 77.6
TPR.G38877 Trifolium pratense HOM05D004383 ORTHO05D005050 3.0e-75 285.4 182 78.0
TAR625G0171 Trochodendron aralioides HOM05D004383 ORTHO05D005050 3.0e-75 285.4 181 77.3
TAR625G1552 Trochodendron aralioides HOM05D004383 ORTHO05D005050 3.0e-75 285.4 181 77.3
Rhsim07G0166500 Rhododendron simsii HOM05D004383 ORTHO05D005050 6.7e-75 284.3 203 72.4
Psat6g025120 Pisum sativum HOM05D004383 ORTHO05D005050 8.8e-75 283.9 182 78.0
FvH4_6g27370 Fragaria vesca HOM05D004383 ORTHO05D005050 5.7e-74 281.2 171 80.1
FAN05G0819 Fragaria x ananassa HOM05D004383 ORTHO05D005050 5.7e-74 281.2 171 80.1
CSS0025027 Camellia sinensis var. sinensis HOM05D004383 ORTHO05D005050 9.7e-74 280.4 170 81.2
Lalb_Chr24g0401921 Lupinus albus HOM05D004383 ORTHO05D005050 9.7e-74 280.4 179 77.1
BolC3t13057H Brassica oleracea HOM05D004383 ORTHO05D005050 1.7e-73 279.6 168 81.5
BolC2t06425H Brassica oleracea HOM05D004383 ORTHO05D003478 4.8e-73 278.1 169 81.1
ECA233G1452 Erigeron canadensis HOM05D004383 ORTHO05D005050 4.8e-73 278.1 174 78.7
HanXRQChr12g0370101 Helianthus annuus HOM05D004383 ORTHO05D005050 8.2e-73 277.3 174 78.7
PSO017G0706 Papaver somniferum HOM05D004383 ORTHO05D005050 1.8e-72 276.2 183 76.5
PSO170G1218 Papaver somniferum HOM05D004383 ORTHO05D005050 1.8e-72 276.2 183 76.5
Haze_21384 Corylus avellana HOM05D004383 ORTHO05D005050 2.4e-72 275.8 200 71.0
FAN14G2933 Fragaria x ananassa HOM05D004383 ORTHO05D005050 3.1e-72 275.4 172 79.1
HanXRQChr07g0201211 Helianthus annuus HOM05D004383 ORTHO05D005050 5.3e-72 274.6 176 77.8
DCAR_003054 Daucus carota HOM05D004383 ORTHO05D005050 7.0e-72 274.2 168 81.5
ATR0580G398 Amborella trichopoda HOM05D004383 ORTHO05D005050 4.5e-71 271.6 179 75.4
vmacro05117 Vaccinium macrocarpon HOM05D004383 ORTHO05D005050 2.9e-70 268.9 168 80.4
CDE02G0236 Ceratophyllum demersum HOM05D004383 ORTHO05D005050 6.5e-70 267.7 181 74.6
MD08G1052600 Malus domestica HOM05D004383 ORTHO05D005050 1.1e-69 266.9 177 76.3
CDE05G2494 Ceratophyllum demersum HOM05D004383 ORTHO05D005050 1.4e-69 266.5 181 74.6
MBI14_g31383_MAGBIO Magnolia biondii HOM05D004383 ORTHO05D005050 1.6e-68 263.1 181 72.9
SEGI_36915 Sequoiadendron giganteum HOM05D004383 ORTHO05D005050 8.0e-68 260.8 168 73.2
FAN02G2967 Fragaria x ananassa HOM05D004383 ORTHO05D005050 1.8e-67 259.6 161 78.9
Os03g0360500 Oryza sativa ssp. japonica HOM05D004383 ORTHO05D005050 1.1e-66 256.9 182 70.9
Zm00001eb394360 Zea mays HOM05D004383 ORTHO05D005050 7.4e-66 254.2 178 70.2
Dinv10290 Davidia involucrata HOM05D004383 ORTHO05D005050 1.0e-62 243.8 150 81.3
Sc23g0006160 Simmondsia chinensis HOM05D004383 ORTHO05D005050 5.0e-62 241.5 148 81.8
SMO367G0045 Selaginella moellendorffii HOM05D004383 ORTHO05D005050 6.5e-62 241.1 165 69.1
vmacro11269 Vaccinium macrocarpon HOM05D004383 ORTHO05D005050 8.5e-62 240.7 258 52.7
Mapoly0039s0015 Marchantia polymorpha HOM05D004383 ORTHO05D005050 1.2e-60 236.9 171 64.9
Actinidia10531 Actinidia chinensis HOM05D004383 ORTHO05D005050 1.3e-57 226.9 178 66.9
AagrBONN_evm.TU.Sc2ySwM_368.2778 Anthoceros agrestis HOM05D004383 ORTHO05D005050 2.2e-57 226.1 174 62.6
Pp3c18_15950 Physcomitrium patens HOM05D004383 ORTHO05D005050 1.8e-56 223.0 166 64.5
CBR_g29297 Chara braunii HOM05D004383 ORTHO05D005050 1.3e-49 200.3 172 57.6
BcaNung06638 Brassica carinata HOM05D004383 ORTHO05D005050 3.1e-48 195.7 128 75.8
Aqoxy7G03322 Aquilegia oxysepala HOM05D004383 ORTHO05D005050 1.8e-40 169.9 172 55.2
Dinv01903 Davidia involucrata HOM05D004383 ORTHO05D005050 4.1e-40 168.7 102 84.3
TAR383G0062 Trochodendron aralioides HOM05D004383 ORTHO05D005050 2.1e-36 156.4 102 79.4
HPP92_021944 Vanilla planifolia HOM05D004383 ORTHO05D005050 5.8e-34 148.3 116 68.1
MCO09G762 Micromonas commoda HOM05D004383 ORTHO05D005050 6.6e-30 134.8 176 40.3
HPP92_021971 Vanilla planifolia HOM05D004383 ORTHO05D005050 3.3e-29 132.5 79 79.7
PRCOL_00000905 Prasinoderma coloniale HOM05D004383 ORTHO05D005050 2.3e-27 126.3 172 38.4
arahy.Tifrunner.gnm1.ann1.76P32W Arachis hypogaea HOM05D004383 ORTHO05D005050 3.4e-26 122.5 75 80.0
arahy.Tifrunner.gnm1.ann1.90HH72 Arachis hypogaea HOM05D004383 ORTHO05D005050 3.4e-26 122.5 75 80.0
TAR383G0705 Trochodendron aralioides HOM05D004383 ORTHO05D005050 3.4e-26 122.5 69 81.2
Oeu048647.1 Olea europaea HOM05D004383 ORTHO05D005050 2.7e-23 112.8 62 88.7
CSS0013447 Camellia sinensis var. sinensis HOM05D004383 ORTHO05D005050 7.3e-21 104.8 57 82.5
DCAR_031730 Daucus carota HOM05D004383 ORTHO05D005050 8.9e-19 97.8 100 54.0
Cfa024789 Carpinus fangiana HOM05D004383 ORTHO05D005050 2.0e-18 96.7 166 36.7
DCAR_030622 Daucus carota HOM05D001936 ORTHO05D005050 4.4e-18 95.5 83 60.2
Medtr8g027900 Medicago truncatula HOM05D000337 ORTHO05D000297 2.9e-17 92.8 209 38.3
Cre07.g351700 Chlamydomonas reinhardtii HOM05D004383 ORTHO05D005050 8.3e-17 91.3 169 33.7
CSS0012906 Camellia sinensis var. sinensis HOM05D004383 ORTHO05D005050 1.1e-16 90.9 54 79.6
Lalb_Chr15g0080471 Lupinus albus HOM05D004383 ORTHO05D005050 2.4e-11 73.2 90 45.6
Atru.chr7.2578 Acer truncatum HOM05D004610 ORTHO05D001148 2.0e-10 70.1 52 69.2
Atru.chr7.2585 Acer truncatum HOM05D004383 ORTHO05D005050 2.6e-10 69.7 45 73.3
C03p33160 Brassica napus HOM05D004383 ORTHO05D005050 3.8e-09 65.9 38 81.6
BolC3t15641H Brassica oleracea HOM05D004383 ORTHO05D005050 3.8e-09 65.9 38 81.6
Lalb_Chr10g0093521 Lupinus albus HOM05D004383 ORTHO05D005050 1.1e-08 64.3 38 84.2
Lalb_Chr15g0078021 Lupinus albus HOM05D004383 ORTHO05D005050 2.4e-08 63.2 88 44.3
arahy.Tifrunner.gnm1.ann1.54XXT5 Arachis hypogaea HOM05D004383 ORTHO05D005050 4.2e-08 62.4 37 78.4
BcaB07g33518 Brassica carinata HOM05D001184 ORTHO05D005050 2.7e-07 59.7 43 72.1
Lalb_Chr01g0013281 Lupinus albus HOM05D004383 ORTHO05D005050 1.7e-06 57.0 50 58.0
MD10G1133700 Malus domestica HOM05D004383 ORTHO05D005050 2.3e-06 56.6 63 50.8
RcHm_v2.0_Chr3g0494951 Rosa chinensis HOM05D004383 ORTHO05D005050 3.0e-06 56.2 29 82.8
MD03G1162600 Malus domestica HOM05D004383 ORTHO05D005050 3.9e-06 55.8 43 65.1


User provided reference genes

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