Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Migut.E01428 Erythranthe guttata HOM05D006165 ORTHO05D007122 4.5e-40 167.5 88 100.0
SalBow8G3105 Salvia bowleyana HOM05D006165 ORTHO05D007122 2.7e-37 158.3 88 93.2
SalBow8G4770 Salvia bowleyana HOM05D006165 ORTHO05D007122 2.7e-37 158.3 88 93.2
Solyc12g096340.2 Solanum lycopersicum HOM05D006165 ORTHO05D007122 4.6e-37 157.5 88 89.8
Sopen12g032200 Solanum pennellii HOM05D006165 ORTHO05D007122 4.6e-37 157.5 88 89.8
PGSC0003DMG400029372 Solanum tuberosum HOM05D006165 ORTHO05D007122 1.8e-36 155.6 88 88.6
Nitab4.5_0001159g0150 Nicotiana tabacum HOM05D006165 ORTHO05D007122 3.0e-36 154.8 88 88.6
CAN.G947.12 Capsicum annuum HOM05D006165 ORTHO05D007122 5.1e-36 154.1 88 88.6
CSS0007887 Camellia sinensis var. sinensis HOM05D006165 ORTHO05D007122 8.7e-36 153.3 88 89.8
Cc08_g06570 Coffea canephora HOM05D006165 ORTHO05D007122 1.1e-35 152.9 88 88.6
Ca_15645_v3 Cicer arietinum L. HOM05D006165 ORTHO05D007122 1.9e-35 152.1 88 90.9
Peaxi162Scf00459g00842 Petunia axillaris HOM05D006165 ORTHO05D007122 3.3e-35 151.4 88 86.4
COL.COLO4_19013 Corchorus olitorius HOM05D006165 ORTHO05D007122 5.6e-35 150.6 88 88.6
Manes.03G005300 Manihot esculenta HOM05D006165 ORTHO05D007122 7.4e-35 150.2 88 87.5
TWI63G0193 Tripterygium wilfordii HOM05D006165 ORTHO05D007122 7.4e-35 150.2 88 87.5
GSVIVG01033167001 Vitis vinifera HOM05D006165 ORTHO05D007122 7.4e-35 150.2 88 88.6
Actinidia22269 Actinidia chinensis HOM05D006165 ORTHO05D007122 9.6e-35 149.8 88 87.5
CiPaw.07G210800 Carya illinoinensis HOM05D006165 ORTHO05D007122 1.6e-34 149.1 88 88.6
Duzib168G2215 Durio zibethinus HOM05D006165 ORTHO05D007122 1.6e-34 149.1 88 87.5
arahy.Tifrunner.gnm1.ann1.IM7VUN Arachis hypogaea HOM05D006165 ORTHO05D007122 2.8e-34 148.3 88 88.6
arahy.Tifrunner.gnm1.ann1.VQZ49N Arachis hypogaea HOM05D006165 ORTHO05D007122 2.8e-34 148.3 88 88.6
Oeu008771.1 Olea europaea HOM05D006165 ORTHO05D007122 2.8e-34 148.3 89 85.4
QL12p025620 Quercus lobata HOM05D006165 ORTHO05D007122 2.8e-34 148.3 87 87.4
Thecc.09G009400 Theobroma cacao HOM05D006165 ORTHO05D007122 2.8e-34 148.3 88 87.5
Prupe.1G457700 Prunus persica HOM05D006165 ORTHO05D007122 4.8e-34 147.5 88 87.5
MSTRG.1617 Avicennia marina HOM05D006165 ORTHO05D007122 6.2e-34 147.1 88 86.4
Lj8A479G58 Lonicera japonica HOM05D006165 ORTHO05D007122 6.2e-34 147.1 88 86.4
CANSAT21G0300 Cannabis sativa HOM05D006165 ORTHO05D007122 8.1e-34 146.7 88 86.4
TPR.G12351 Trifolium pratense HOM05D006165 ORTHO05D007122 8.1e-34 146.7 88 87.5
vmacro07596 Vaccinium macrocarpon HOM05D006165 ORTHO05D007122 8.1e-34 146.7 88 85.2
Cfa013294 Carpinus fangiana HOM05D006165 ORTHO05D007122 1.4e-33 146.0 88 87.5
PSO782G2746 Papaver somniferum HOM05D006165 ORTHO05D007122 1.4e-33 146.0 88 86.4
RhsimUnG0021400 Rhododendron simsii HOM05D006165 ORTHO05D007122 1.4e-33 146.0 88 85.2
Eucgr.C04017 Eucalyptus grandis HOM05D006165 ORTHO05D007122 1.8e-33 145.6 88 86.4
Lj8C450G4 Lonicera japonica HOM05D006165 ORTHO05D007122 1.8e-33 145.6 88 85.2
Medtr3g109070 Medicago truncatula HOM05D006165 ORTHO05D007122 1.8e-33 145.6 88 86.4
TWI32G0478 Tripterygium wilfordii HOM05D006165 ORTHO05D007122 1.8e-33 145.6 88 84.1
Gohir.D07G038400 Gossypium hirsutum HOM05D006165 ORTHO05D007122 3.1e-33 144.8 88 85.2
Gorai.001G040400 Gossypium raimondii HOM05D006165 ORTHO05D007122 3.1e-33 144.8 88 85.2
Psat5g023880 Pisum sativum HOM05D006165 ORTHO05D007122 3.1e-33 144.8 88 86.4
Aqoxy7G03190 Aquilegia oxysepala HOM05D006165 ORTHO05D007122 4.0e-33 144.4 88 86.4
Lj1g0019857 Lotus japonicus HOM05D006165 ORTHO05D007122 5.3e-33 144.1 86 87.2
Nitab4.5_0003963g0030 Nicotiana tabacum HOM05D006165 ORTHO05D007122 5.3e-33 144.1 88 85.2
Atru.chr7.2611 Acer truncatum HOM05D006165 ORTHO05D007122 6.9e-33 143.7 88 84.1
AUR62037706 Chenopodium quinoa HOM05D006165 ORTHO05D007122 6.9e-33 143.7 88 83.0
Nn2g12600 Nelumbo nucifera HOM05D006165 ORTHO05D007122 6.9e-33 143.7 85 87.1
Ciclev10008929m.g Citrus clementina HOM05D006165 ORTHO05D007122 9.0e-33 143.3 88 86.4
MD15G1105900 Malus domestica HOM05D006165 ORTHO05D007122 9.0e-33 143.3 88 85.2
RcHm_v2.0_Chr6g0305211 Rosa chinensis HOM05D006165 ORTHO05D007122 9.0e-33 143.3 88 84.1
Sabra18G0016200 Salix brachista HOM05D006165 ORTHO05D007122 9.0e-33 143.3 88 84.1
Haze_21771 Corylus avellana HOM05D006165 ORTHO05D007122 1.5e-32 142.5 88 85.2
Sp7g29430 Schrenkiella parvula HOM05D006165 ORTHO05D007122 2.0e-32 142.1 88 83.0
AL7G20440 Arabidopsis lyrata HOM05D006165 ORTHO05D007122 2.6e-32 141.7 88 83.0
AT4G31600 Arabidopsis thaliana HOM05D006165 ORTHO05D007122 2.6e-32 141.7 88 83.0
EL10Ac2g02421 Beta vulgaris HOM05D006165 ORTHO05D007122 2.6e-32 141.7 88 84.1
Carub.0007s0897 Capsella rubella HOM05D006165 ORTHO05D007122 2.6e-32 141.7 88 83.0
FAN27G2128 Fragaria x ananassa HOM05D005511 ORTHO05D007122 2.6e-32 141.7 88 83.0
VMungo1309G2577 Vigna mungo HOM05D006165 ORTHO05D007122 2.6e-32 141.7 88 86.4
CARHR239480 Cardamine hirsuta HOM05D006165 ORTHO05D007122 3.4e-32 141.4 87 82.8
AUR62020293 Chenopodium quinoa HOM05D006165 ORTHO05D007122 3.4e-32 141.4 88 81.8
Sc07g0007350 Simmondsia chinensis HOM05D006165 ORTHO05D007122 3.4e-32 141.4 88 81.8
MBI14_g30706_MAGBIO Magnolia biondii HOM05D006165 ORTHO05D007122 4.5e-32 141.0 88 84.1
Thhalv10025721m.g Eutrema salsugineum HOM05D006165 ORTHO05D007122 5.8e-32 140.6 88 81.8
FAN20G1701 Fragaria x ananassa HOM05D005511 ORTHO05D007122 5.8e-32 140.6 88 81.8
Potri.018G009400 Populus trichocarpa HOM05D006165 ORTHO05D007122 5.8e-32 140.6 88 83.0
Aa31LG2G18680 Aethionema arabicum HOM05D006165 ORTHO05D007122 7.6e-32 140.2 88 81.8
FvH4_2g36601 Fragaria vesca HOM05D006165 ORTHO05D007122 9.9e-32 139.8 88 81.8
Gohir.A07G034748 Gossypium hirsutum HOM05D006165 ORTHO05D007122 9.9e-32 139.8 88 83.0
Lalb_Chr23g0269201 Lupinus albus HOM05D006165 ORTHO05D007122 9.9e-32 139.8 88 84.1
THA.LOC104803627 Tarenaya hassleriana HOM05D006165 ORTHO05D007122 9.9e-32 139.8 88 83.0
Phvul.009G102300 Phaseolus vulgaris HOM05D006165 ORTHO05D007122 1.3e-31 139.4 88 84.1
PGR044G1574 Punica granatum HOM05D006165 ORTHO05D007122 1.3e-31 139.4 88 83.0
TAR383G0135 Trochodendron aralioides HOM05D006165 ORTHO05D007122 1.3e-31 139.4 88 84.1
CiPaw.08G021000 Carya illinoinensis HOM05D006165 ORTHO05D007122 1.7e-31 139.0 89 83.1
Sabra06G0210400 Salix brachista HOM05D006165 ORTHO05D007122 1.7e-31 139.0 88 83.0
ATR0580G193 Amborella trichopoda HOM05D006165 ORTHO05D007122 2.2e-31 138.7 88 81.8
BcaB03g12708 Brassica carinata HOM05D006165 ORTHO05D007122 2.2e-31 138.7 88 80.7
BcaC01g01078 Brassica carinata HOM05D006165 ORTHO05D007122 2.2e-31 138.7 88 80.7
A08p18550 Brassica napus HOM05D006165 ORTHO05D007122 2.2e-31 138.7 88 80.7
C03p87780 Brassica napus HOM05D006165 ORTHO05D007122 2.2e-31 138.7 88 80.7
BolC3t21091H Brassica oleracea HOM05D006165 ORTHO05D007122 2.2e-31 138.7 88 80.7
BraA08t33817Z Brassica rapa HOM05D006165 ORTHO05D007122 2.2e-31 138.7 88 80.7
unitig_0.g2188 Utricularia gibba HOM05D006165 ORTHO05D007122 2.9e-31 138.3 88 80.7
ClCG08G012590 Citrullus lanatus HOM05D006165 ORTHO05D007122 4.9e-31 137.5 78 91.0
Hma1.2p1_0102F.1_g049850 Hydrangea macrophylla HOM05D006165 ORTHO05D007122 4.9e-31 137.5 84 89.3
Cpa.g.sc23.39 Carica papaya HOM05D006165 ORTHO05D007122 1.4e-30 136.0 87 80.5
Glyma.06G077800 Glycine max HOM05D006165 ORTHO05D007122 1.4e-30 136.0 88 80.7
MD08G1126100 Malus domestica HOM05D006165 ORTHO05D007122 1.4e-30 136.0 88 80.7
Hund02966 Selenicereus undatus HOM05D006165 ORTHO05D007122 4.2e-30 134.4 88 80.7
Sed0016029 Sechium edule HOM05D006165 ORTHO05D007122 7.1e-30 133.7 78 87.2
DCAR_000684 Daucus carota HOM05D006165 ORTHO05D007122 1.6e-29 132.5 88 80.7
CsaV3_2G031310 Cucumis sativus L. HOM05D006165 ORTHO05D007122 3.5e-29 131.3 78 87.2
CDE05G0069 Ceratophyllum demersum HOM05D006165 ORTHO05D007122 4.6e-29 131.0 85 81.2
Os06g0188100 Oryza sativa ssp. japonica HOM05D006165 ORTHO05D007122 6.0e-29 130.6 85 80.0
Zm00001eb391110 Zea mays HOM05D006165 ORTHO05D007122 1.0e-28 129.8 85 80.0
Zm00001eb422880 Zea mays HOM05D006165 ORTHO05D007122 1.0e-28 129.8 85 80.0
HPP92_015853 Vanilla planifolia HOM05D006165 ORTHO05D007122 1.3e-28 129.4 87 78.2
SEGI_12356 Sequoiadendron giganteum HOM05D006165 ORTHO05D007122 3.9e-28 127.9 81 81.5
Ah.10g024890 Amaranthus hybridus HOM05D006165 ORTHO05D007122 5.1e-28 127.5 88 78.4
SMO351G0409 Selaginella moellendorffii HOM05D006165 ORTHO05D007122 3.3e-27 124.8 81 77.8
HanXRQChr03g0081901 Helianthus annuus HOM05D006165 ORTHO05D007122 5.6e-27 124.0 79 83.5
HanXRQChr17g0547151 Helianthus annuus HOM05D006165 ORTHO05D007122 5.6e-27 124.0 79 83.5
Lsat_1_v5_gn_5_46160 Lactuca sativa HOM05D006165 ORTHO05D007122 9.6e-27 123.2 74 86.5
ECA240G4065 Erigeron canadensis HOM05D006165 ORTHO05D007122 2.8e-26 121.7 79 82.3
Nn8g40282 Nelumbo nucifera HOM05D006165 ORTHO05D007122 1.1e-25 119.8 80 80.0
Dinv04088 Davidia involucrata HOM05D006165 ORTHO05D007122 2.4e-25 118.6 64 96.9
Mapoly0009s0233 Marchantia polymorpha HOM05D006165 ORTHO05D007122 5.8e-24 114.0 74 81.1
AagrBONN_evm.TU.Sc2ySwM_344.2498 Anthoceros agrestis HOM05D006165 ORTHO05D007122 2.5e-22 108.6 82 72.0
Sed0025542 Sechium edule HOM05D006165 ORTHO05D007122 5.5e-22 107.5 79 77.2
Zm00001eb163870 Zea mays HOM05D006165 ORTHO05D007122 1.3e-20 102.8 62 88.7
Mapoly0006s0268 Marchantia polymorpha HOM05D006165 ORTHO05D007122 1.8e-20 102.4 85 61.2
Cre17.g703250 Chlamydomonas reinhardtii HOM05D006165 ORTHO05D007122 6.9e-17 90.5 76 59.2
CBR_g4355 Chara braunii HOM05D006165 ORTHO05D007122 2.0e-16 89.0 74 63.5
Pp3c11_23500 Physcomitrium patens HOM05D006165 ORTHO05D007122 2.5e-14 82.0 87 49.4
MCO11G920 Micromonas commoda HOM05D006165 ORTHO05D007122 7.2e-14 80.5 74 59.5
Glyma.04G076600 Glycine max HOM05D006165 ORTHO05D007122 2.7e-13 78.6 55 70.9
Pp3c25_13780 Physcomitrium patens HOM05D006165 ORTHO05D007122 6.1e-13 77.4 74 52.7
Pp3c7_2020 Physcomitrium patens HOM05D006165 ORTHO05D007122 8.8e-12 73.6 72 52.8
Cre16.g666250 Chlamydomonas reinhardtii HOM05D006165 ORTHO05D007122 1.1e-11 73.2 64 59.4
PRCOL_00004919 Prasinoderma coloniale HOM05D006165 ORTHO05D007122 2.0e-11 72.4 70 52.9
CBR_g60598 Chara braunii HOM05D002754 ORTHO05D003271 1.5e-08 62.8 70 45.7
PRCOL_00006715 Prasinoderma coloniale HOM05D002754 ORTHO05D003271 1.7e-07 59.3 71 40.8
A01p06660 Brassica napus HOM05D000340 ORTHO05D000821 6.5e-07 57.4 54 64.8
Medtr5g091610 Medicago truncatula HOM05D001363 ORTHO05D006839 1.9e-06 55.8 40 77.5
MSTRG.11612 Avicennia marina HOM05D002754 ORTHO05D003271 3.2e-06 55.1 67 47.8
C01p07420 Brassica napus HOM05D000340 ORTHO05D000821 4.2e-06 54.7 32 90.6
unitig_747.g21383 Utricularia gibba HOM05D006165 ORTHO05D007122 5.5e-06 54.3 36 61.1
HPP92_015840 Vanilla planifolia HOM05D006165 ORTHO05D007122 5.5e-06 54.3 43 74.4


User provided reference genes

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