Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Migut.E01400 Erythranthe guttata HOM05D004872 ORTHO05D006050 3.0e-83 312.0 181 100.0
SGA_v2.0_scaffold144G35815 Striga asiatica HOM05D004872 ORTHO05D006050 5.5e-53 211.5 160 71.2
MSTRG.1742 Avicennia marina HOM05D004872 ORTHO05D006050 5.4e-48 194.9 161 68.3
SalBow6G3136 Salvia bowleyana HOM05D004872 ORTHO05D006050 3.3e-45 185.7 157 65.0
SalBow1G8122 Salvia bowleyana HOM05D004872 ORTHO05D006050 1.0e-43 180.6 149 65.1
Dinv22205 Davidia involucrata HOM05D004872 ORTHO05D006050 6.3e-41 171.4 160 61.2
DCAR_030961 Daucus carota HOM05D004872 ORTHO05D006050 1.4e-40 170.2 162 58.0
Prupe.7G012800 Prunus persica HOM05D004872 ORTHO05D006050 7.0e-40 167.9 163 54.6
RcHm_v2.0_Chr5g0046151 Rosa chinensis HOM05D004872 ORTHO05D006050 7.0e-40 167.9 179 58.1
Thecc.09G254600 Theobroma cacao HOM05D004872 ORTHO05D006050 1.6e-39 166.8 152 60.5
Manes.09G068000 Manihot esculenta HOM05D004872 ORTHO05D006050 3.5e-39 165.6 153 60.1
Prupe.4G268800 Prunus persica HOM05D004872 ORTHO05D006050 3.5e-39 165.6 164 53.0
Duzib150G1163 Durio zibethinus HOM05D004872 ORTHO05D006050 2.3e-38 162.9 153 60.1
PGSC0003DMG400003977 Solanum tuberosum HOM05D004872 ORTHO05D006050 2.3e-38 162.9 164 62.8
FvH4_3g25170 Fragaria vesca HOM05D004872 ORTHO05D006050 3.9e-38 162.2 160 55.0
FAN25G2824 Fragaria x ananassa HOM05D004872 ORTHO05D006050 3.9e-38 162.2 160 55.0
GSVIVG01037356001 Vitis vinifera HOM05D004872 ORTHO05D006050 5.0e-38 161.8 155 58.1
CSS0006428 Camellia sinensis var. sinensis HOM05D004872 ORTHO05D006050 1.1e-37 160.6 142 59.9
Peaxi162Scf00025g02826 Petunia axillaris HOM05D004872 ORTHO05D006050 2.5e-37 159.5 140 59.3
Rhsim07G0167900 Rhododendron simsii HOM05D004872 ORTHO05D006050 3.3e-37 159.1 165 54.5
CAN.G1549.27 Capsicum annuum HOM05D004872 ORTHO05D006050 2.8e-36 156.0 141 60.3
Nitab4.5_0002138g0010 Nicotiana tabacum HOM05D004872 ORTHO05D006050 2.8e-36 156.0 141 60.3
Atru.chr4.2930 Acer truncatum HOM05D004872 ORTHO05D006050 4.7e-36 155.2 167 54.5
Ciclev10006059m.g Citrus clementina HOM05D004872 ORTHO05D006050 8.0e-36 154.5 146 55.5
Cpa.g.sc34.184 Carica papaya HOM05D004872 ORTHO05D006050 1.4e-35 153.7 153 52.9
arahy.Tifrunner.gnm1.ann1.U00P2R Arachis hypogaea HOM05D004872 ORTHO05D006050 5.2e-35 151.8 164 51.8
Cfa009914 Carpinus fangiana HOM05D004872 ORTHO05D006050 6.8e-35 151.4 158 54.4
Cc11_g04500 Coffea canephora HOM05D004872 ORTHO05D006050 8.9e-35 151.0 147 57.8
CANSAT54G2026 Cannabis sativa HOM05D004872 ORTHO05D006050 1.5e-34 150.2 162 53.1
Haze_23271 Corylus avellana HOM05D004500 ORTHO05D005775 1.5e-34 150.2 154 54.5
THA.LOC104816943 Tarenaya hassleriana HOM05D004872 ORTHO05D006050 4.4e-34 148.7 155 51.0
Lj6g0009628 Lotus japonicus HOM05D004872 ORTHO05D006050 7.5e-34 147.9 151 53.6
Lj6g0013181 Lotus japonicus HOM05D004872 ORTHO05D006050 7.5e-34 147.9 151 53.6
Actinidia06989 Actinidia chinensis HOM05D004500 ORTHO05D005775 9.8e-34 147.5 107 68.2
arahy.Tifrunner.gnm1.ann1.EX2XSN Arachis hypogaea HOM05D004872 ORTHO05D006050 9.8e-34 147.5 164 50.0
COL.COLO4_24934 Corchorus olitorius HOM05D004872 ORTHO05D006050 9.8e-34 147.5 161 60.2
Sabra13G0065000 Salix brachista HOM05D004872 ORTHO05D006050 9.8e-34 147.5 171 50.3
Solyc11g005570.2 Solanum lycopersicum HOM05D004872 ORTHO05D006050 1.3e-33 147.1 164 57.9
Sopen11g001540 Solanum pennellii HOM05D004872 ORTHO05D006050 1.3e-33 147.1 164 57.9
TAR633G0253 Trochodendron aralioides HOM05D004872 ORTHO05D006050 1.3e-33 147.1 159 53.5
QL01p016491 Quercus lobata HOM05D004872 ORTHO05D006050 1.7e-33 146.7 146 53.4
QL01p024148 Quercus lobata HOM05D004872 ORTHO05D006050 1.7e-33 146.7 146 53.4
TPR.G29301 Trifolium pratense HOM05D004872 ORTHO05D006050 1.7e-33 146.7 172 52.9
Glyma.01G027700 Glycine max HOM05D004872 ORTHO05D006050 2.2e-33 146.4 160 52.5
Lsat_1_v5_gn_3_110040 Lactuca sativa HOM05D004872 ORTHO05D006050 3.7e-33 145.6 155 51.6
Psat2g130480 Pisum sativum HOM05D004872 ORTHO05D006050 3.7e-33 145.6 151 57.0
Gohir.A09G108400 Gossypium hirsutum HOM05D004872 ORTHO05D006050 4.9e-33 145.2 143 57.3
Gohir.D09G105300 Gossypium hirsutum HOM05D004872 ORTHO05D006050 4.9e-33 145.2 166 59.0
Glyma.08G136100 Glycine max HOM05D004872 ORTHO05D006050 6.4e-33 144.8 158 51.3
TPR.G26917 Trifolium pratense HOM05D004872 ORTHO05D006050 8.3e-33 144.4 172 52.3
AUR62000220 Chenopodium quinoa HOM05D004872 ORTHO05D006050 1.1e-32 144.1 143 57.3
Sc11g0003110 Simmondsia chinensis HOM05D004872 ORTHO05D006050 1.1e-32 144.1 178 55.6
CiPaw.14G110500 Carya illinoinensis HOM05D004872 ORTHO05D006050 1.4e-32 143.7 150 53.3
FAN11G3172 Fragaria x ananassa HOM05D004872 ORTHO05D006050 1.4e-32 143.7 122 62.3
MD12G1010900 Malus domestica HOM05D004872 ORTHO05D006050 3.2e-32 142.5 138 52.9
Phvul.002G255800 Phaseolus vulgaris HOM05D004872 ORTHO05D006050 3.2e-32 142.5 172 47.7
ECA233G5422 Erigeron canadensis HOM05D004872 ORTHO05D006050 4.1e-32 142.1 130 58.5
Hma1.2p1_0299F.1_g117840 Hydrangea macrophylla HOM05D004872 ORTHO05D006050 4.1e-32 142.1 157 52.2
VMungo0251G0214 Vigna mungo HOM05D004872 ORTHO05D006050 4.1e-32 142.1 149 51.0
MELO3C014544.2 Cucumis melo HOM05D004872 ORTHO05D006050 5.4e-32 141.7 137 56.9
Oeu026038.1 Olea europaea HOM05D004872 ORTHO05D006050 5.4e-32 141.7 121 64.5
Lsat_1_v5_gn_8_24740 Lactuca sativa HOM05D004872 ORTHO05D006050 9.2e-32 141.0 155 51.0
Oeu040527.1 Olea europaea HOM05D004872 ORTHO05D006050 9.2e-32 141.0 121 63.6
CsaV3_6G038800 Cucumis sativus L. HOM05D004872 ORTHO05D006050 1.6e-31 140.2 166 50.0
Gorai.006G122300 Gossypium raimondii HOM05D004872 ORTHO05D006050 1.6e-31 140.2 167 59.3
Nitab4.5_0001582g0110 Nicotiana tabacum HOM05D004872 ORTHO05D006050 1.6e-31 140.2 125 62.4
ClCG02G022680 Citrullus lanatus HOM05D004872 ORTHO05D006050 3.5e-31 139.0 168 49.4
CiPaw.13G148000 Carya illinoinensis HOM05D004872 ORTHO05D006050 4.6e-31 138.7 162 50.0
Manes.08G069866 Manihot esculenta HOM05D004872 ORTHO05D006050 4.6e-31 138.7 152 53.3
TWI31G0308 Tripterygium wilfordii HOM05D004872 ORTHO05D006050 4.6e-31 138.7 140 53.6
Thhalv10019047m.g Eutrema salsugineum HOM05D004872 ORTHO05D006050 6.0e-31 138.3 163 48.5
HanXRQChr08g0217181 Helianthus annuus HOM05D004872 ORTHO05D006050 7.8e-31 137.9 152 49.3
Medtr7g096840 Medicago truncatula HOM05D004872 ORTHO05D006050 1.0e-30 137.5 162 53.1
Potri.013G075500 Populus trichocarpa HOM05D004872 ORTHO05D006050 1.0e-30 137.5 144 52.8
HanXRQChr10g0315331 Helianthus annuus HOM05D004872 ORTHO05D006050 1.7e-30 136.7 159 50.3
Sp4g26910 Schrenkiella parvula HOM05D004872 ORTHO05D006050 6.6e-30 134.8 119 58.0
Ah.04g159640 Amaranthus hybridus HOM05D004872 ORTHO05D006050 8.6e-30 134.4 168 50.6
arahy.Tifrunner.gnm1.ann1.K1U5S9 Arachis hypogaea HOM05D004872 ORTHO05D006050 1.1e-29 134.0 186 44.6
Aa31LG1G26360 Aethionema arabicum HOM05D004872 ORTHO05D006050 1.5e-29 133.7 160 47.5
A05p12650 Brassica napus HOM05D004872 ORTHO05D006050 1.5e-29 133.7 147 49.7
Eucgr.J02277 Eucalyptus grandis HOM05D004872 ORTHO05D006050 1.5e-29 133.7 155 50.3
BcaC02g12267 Brassica carinata HOM05D004872 ORTHO05D006050 1.9e-29 133.3 139 50.4
C04p05820 Brassica napus HOM05D004872 ORTHO05D006050 1.9e-29 133.3 139 50.4
Nn2g15815 Nelumbo nucifera HOM05D004872 ORTHO05D006050 1.9e-29 133.3 171 47.4
A05p04990 Brassica napus HOM05D004872 ORTHO05D006050 2.5e-29 132.9 139 50.4
Carub.0004s2739 Capsella rubella HOM05D004872 ORTHO05D006050 2.5e-29 132.9 167 46.7
vmacro05825 Vaccinium macrocarpon HOM05D004872 ORTHO05D006050 2.5e-29 132.9 158 51.9
BolC4t22211H Brassica oleracea HOM05D004872 ORTHO05D006050 3.3e-29 132.5 167 46.7
BraA05t19473Z Brassica rapa HOM05D004872 ORTHO05D006050 3.3e-29 132.5 139 51.1
Lalb_Chr04g0249071 Lupinus albus HOM05D004872 ORTHO05D006050 4.3e-29 132.1 160 51.2
BraA05t20203Z Brassica rapa HOM05D004872 ORTHO05D006050 7.3e-29 131.3 144 48.6
PSO541G2017 Papaver somniferum HOM05D004872 ORTHO05D006050 7.3e-29 131.3 109 58.7
AUR62006565 Chenopodium quinoa HOM05D004872 ORTHO05D006050 9.5e-29 131.0 135 56.3
PSO017G2452 Papaver somniferum HOM05D004872 ORTHO05D006050 1.2e-28 130.6 136 52.2
PSO017G5814 Papaver somniferum HOM05D004872 ORTHO05D006050 1.2e-28 130.6 136 52.2
PSO529G0002 Papaver somniferum HOM05D004872 ORTHO05D006050 1.2e-28 130.6 136 52.2
PSO705G0001 Papaver somniferum HOM05D004872 ORTHO05D006050 1.2e-28 130.6 136 52.2
BcaB02g08868 Brassica carinata HOM05D004872 ORTHO05D006050 2.8e-28 129.4 143 49.7
BolC4t23202H Brassica oleracea HOM05D004872 ORTHO05D006050 3.6e-28 129.0 144 49.3
PSO591G0248 Papaver somniferum HOM05D004872 ORTHO05D006050 4.7e-28 128.6 136 51.5
PSO591G0356 Papaver somniferum HOM05D004872 ORTHO05D006050 4.7e-28 128.6 161 46.6
Nn8g39701 Nelumbo nucifera HOM05D004872 ORTHO05D006050 1.1e-27 127.5 147 50.3
CDE05G2894 Ceratophyllum demersum HOM05D004872 ORTHO05D006050 1.4e-27 127.1 131 54.2
EL10Ac4g10086 Beta vulgaris HOM05D004872 ORTHO05D006050 2.3e-27 126.3 132 53.0
Aqoxy2G00467 Aquilegia oxysepala HOM05D004872 ORTHO05D006050 3.1e-27 125.9 135 51.9
AL4G43900 Arabidopsis lyrata HOM05D004872 ORTHO05D006050 3.1e-27 125.9 146 46.6
Sed0007255 Sechium edule HOM05D004872 ORTHO05D006050 8.9e-27 124.4 139 54.7
Hund07423 Selenicereus undatus HOM05D004872 ORTHO05D006050 8.9e-27 124.4 115 55.7
arahy.Tifrunner.gnm1.ann1.R4J47E Arachis hypogaea HOM05D004872 ORTHO05D006050 1.5e-26 123.6 189 43.4
Aqoxy1G01418 Aquilegia oxysepala HOM05D004872 ORTHO05D006050 2.6e-26 122.9 168 47.0
Aqoxy7G03169 Aquilegia oxysepala HOM05D004872 ORTHO05D006050 3.4e-26 122.5 135 50.4
ECA236G0590 Erigeron canadensis HOM05D004872 ORTHO05D006050 5.8e-26 121.7 100 65.0
Aa31LG9G10050 Aethionema arabicum HOM05D004872 ORTHO05D006050 7.5e-26 121.3 168 44.6
CARHR140030 Cardamine hirsuta HOM05D004872 ORTHO05D006050 7.5e-26 121.3 141 48.2
MBI17_g09534_MAGBIO Magnolia biondii HOM05D004872 ORTHO05D006050 1.3e-25 120.6 142 50.0
Aqoxy72s001 Aquilegia oxysepala HOM05D004872 ORTHO05D006050 1.7e-25 120.2 132 51.5
AT2G44820 Arabidopsis thaliana HOM05D004872 ORTHO05D006050 4.9e-25 118.6 176 43.2
Os01g0224500 Oryza sativa ssp. japonica HOM05D004872 ORTHO05D006050 1.1e-24 117.5 162 46.9
Sp2g10980 Schrenkiella parvula HOM05D004872 ORTHO05D006050 7.0e-24 114.8 143 46.9
BcaB02g10512 Brassica carinata HOM05D004872 ORTHO05D006050 9.2e-24 114.4 140 45.7
Zm00001eb192850 Zea mays HOM05D004872 ORTHO05D006050 1.7e-22 110.2 154 44.8
HPP92_015870 Vanilla planifolia HOM05D004872 ORTHO05D006050 3.3e-21 105.9 140 44.3
CiPaw.13G148200 Carya illinoinensis HOM05D004872 ORTHO05D006050 1.1e-19 100.9 129 48.1
arahy.Tifrunner.gnm1.ann1.X2Q8UN Arachis hypogaea HOM05D004872 ORTHO05D006050 1.2e-18 97.4 152 44.1
BcaC02g11364 Brassica carinata HOM05D004872 ORTHO05D006050 1.2e-18 97.4 141 44.0
Zm00001eb281550 Zea mays HOM05D004872 ORTHO05D006050 7.5e-18 94.7 126 47.6
Sc11g0003120 Simmondsia chinensis HOM05D004872 ORTHO05D006050 9.9e-18 94.4 122 58.2
ATR0665G028 Amborella trichopoda HOM05D004872 ORTHO05D006050 1.3e-17 94.0 121 43.8
AL7G43510 Arabidopsis lyrata HOM05D004872 ORTHO05D006050 1.9e-16 90.1 170 37.1
SEGI_13451 Sequoiadendron giganteum HOM05D004872 ORTHO05D006050 7.3e-13 78.2 123 38.2
Zm00001eb416880 Zea mays HOM05D004872 ORTHO05D006050 6.2e-12 75.1 105 46.7
AagrBONN_evm.TU.Sc2ySwM_362.236 Anthoceros agrestis HOM05D004872 ORTHO05D006050 1.1e-11 74.3 160 33.8
Pp3c23_7100 Physcomitrium patens HOM05D004872 ORTHO05D006050 1.4e-11 73.9 144 34.0
TPR.G14060 Trifolium pratense HOM05D004872 ORTHO05D006050 2.4e-11 73.2 118 44.9
Mapoly0036s0026 Marchantia polymorpha HOM05D004872 ORTHO05D006050 3.4e-10 69.3 151 34.4
PGR102G1802 Punica granatum HOM05D004872 ORTHO05D006050 9.9e-10 67.8 172 32.6
Aqoxy7G03168 Aquilegia oxysepala HOM05D004872 ORTHO05D006050 1.3e-09 67.4 97 40.2
Atru.chr1.3406 Acer truncatum HOM05D004872 ORTHO05D006050 6.4e-09 65.1 74 54.1
Ca_21429_v3 Cicer arietinum L. HOM05D004872 ORTHO05D006050 2.4e-08 63.2 77 48.1
HanXRQChr17g0569331 Helianthus annuus HOM05D004872 ORTHO05D006050 6.0e-07 58.5 64 43.8
C04p16540 Brassica napus HOM05D004872 ORTHO05D006050 6.6e-06 55.1 166 29.5


User provided reference genes

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