Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Migut.E01261 Erythranthe guttata HOM05D001461 ORTHO05D005534 3.7e-48 194.5 95 100.0
Migut.E01260 Erythranthe guttata HOM05D001461 ORTHO05D005534 2.0e-46 188.7 99 96.0
Migut.B01819 Erythranthe guttata HOM05D001461 ORTHO05D005534 3.8e-45 184.5 99 93.9
SalBow3G1410 Salvia bowleyana HOM05D001461 ORTHO05D005534 7.9e-43 176.8 100 87.0
MSTRG.20880 Avicennia marina HOM05D001461 ORTHO05D005534 8.8e-42 173.3 99 85.9
SGA_v2.0_scaffold4G02266 Striga asiatica HOM05D001461 ORTHO05D005534 1.1e-41 172.9 99 85.9
unitig_62.g23802 Utricularia gibba HOM05D001461 ORTHO05D005534 2.6e-41 171.8 111 77.5
SGA_v2.0_scaffold95G28797 Striga asiatica HOM05D001461 ORTHO05D005534 1.7e-40 169.1 99 84.8
Atru.chr9.2071 Acer truncatum HOM05D001461 ORTHO05D005534 1.1e-39 166.4 99 80.8
CiPaw.12G086700 Carya illinoinensis HOM05D001461 ORTHO05D005534 1.8e-39 165.6 99 81.8
TWI18G0300 Tripterygium wilfordii HOM05D001461 ORTHO05D005534 4.1e-39 164.5 99 79.8
TWI60G0303 Tripterygium wilfordii HOM05D001461 ORTHO05D005534 4.1e-39 164.5 99 79.8
GSVIVG01019462001 Vitis vinifera HOM05D001461 ORTHO05D002801 3.4e-38 161.4 97 81.4
FAN04G2189 Fragaria x ananassa HOM05D001461 ORTHO05D002801 4.5e-38 161.0 99 78.8
FAN08G0967 Fragaria x ananassa HOM05D001461 ORTHO05D005534 4.5e-38 161.0 99 78.8
MELO3C008160.2 Cucumis melo HOM05D001461 ORTHO05D005534 5.9e-38 160.6 99 79.8
CsaV3_2G033880 Cucumis sativus L. HOM05D001461 ORTHO05D005534 5.9e-38 160.6 99 79.8
ClCG11G007680 Citrullus lanatus HOM05D001461 ORTHO05D005534 7.7e-38 160.2 99 78.8
FAN13G1856 Fragaria x ananassa HOM05D001461 ORTHO05D005534 1.3e-37 159.5 99 78.8
Lalb_Chr09g0332711 Lupinus albus HOM05D001461 ORTHO05D005534 1.3e-37 159.5 97 80.4
Medtr5g009740 Medicago truncatula HOM05D001461 ORTHO05D005534 1.7e-37 159.1 97 81.4
RcHm_v2.0_Chr6g0304921 Rosa chinensis HOM05D001461 ORTHO05D005534 1.7e-37 159.1 99 76.8
Dinv32542 Davidia involucrata HOM05D001461 ORTHO05D005534 2.2e-37 158.7 97 79.4
FvH4_5g03750 Fragaria vesca HOM05D001461 ORTHO05D005534 2.2e-37 158.7 99 77.8
MD15G1108200 Malus domestica HOM05D001461 ORTHO05D005534 2.2e-37 158.7 99 79.8
RcHm_v2.0_Chr7g0195901 Rosa chinensis HOM05D001461 ORTHO05D005534 2.2e-37 158.7 99 76.8
Manes.02G014100 Manihot esculenta HOM05D001461 ORTHO05D005534 2.9e-37 158.3 99 76.8
CANSAT21G0685 Cannabis sativa HOM05D001461 ORTHO05D005534 3.8e-37 157.9 97 79.4
Potri.003G135100 Populus trichocarpa HOM05D001461 ORTHO05D005534 5.0e-37 157.5 97 78.4
PGR042G3251 Punica granatum HOM05D001461 ORTHO05D005534 6.5e-37 157.1 97 75.3
CSS0041928 Camellia sinensis var. sinensis HOM05D001461 ORTHO05D005534 1.1e-36 156.4 99 76.8
FAN13G2166 Fragaria x ananassa HOM05D001461 ORTHO05D005534 1.1e-36 156.4 98 77.6
Nn7g37350 Nelumbo nucifera HOM05D001461 ORTHO05D005534 1.1e-36 156.4 96 78.1
Prupe.1G460500 Prunus persica HOM05D001461 ORTHO05D005534 1.1e-36 156.4 99 74.7
COL.COLO4_21750 Corchorus olitorius HOM05D001461 ORTHO05D005534 1.4e-36 156.0 99 74.7
Sed0013897 Sechium edule HOM05D001461 ORTHO05D005534 1.9e-36 155.6 99 75.8
Prupe.5G111900 Prunus persica HOM05D001461 ORTHO05D005534 2.5e-36 155.2 101 77.2
AT5G41650 Arabidopsis thaliana HOM05D001461 ORTHO05D005534 4.2e-36 154.5 99 73.7
Psat2g033040 Pisum sativum HOM05D001461 ORTHO05D005534 4.2e-36 154.5 97 78.4
Hma1.2p1_0397F.1_g143760 Hydrangea macrophylla HOM05D001461 ORTHO05D005534 5.5e-36 154.1 97 76.3
Sabra03G0097400 Salix brachista HOM05D001461 ORTHO05D005534 5.5e-36 154.1 108 71.3
Thecc.03G290500 Theobroma cacao HOM05D001461 ORTHO05D005534 5.5e-36 154.1 99 73.7
Actinidia10093 Actinidia chinensis HOM05D001461 ORTHO05D005534 7.2e-36 153.7 97 77.3
Duzib084G0256 Durio zibethinus HOM05D001461 ORTHO05D005534 7.2e-36 153.7 99 74.7
Hma1.2p1_0384F.1_g140900 Hydrangea macrophylla HOM05D001461 ORTHO05D005534 7.2e-36 153.7 97 76.3
Lsat_1_v5_gn_7_2481 Lactuca sativa HOM05D001461 ORTHO05D005534 7.2e-36 153.7 98 77.6
FvH4_5g27350 Fragaria vesca HOM05D001461 ORTHO05D005534 9.4e-36 153.3 96 76.0
Eucgr.E00823 Eucalyptus grandis HOM05D001461 ORTHO05D005534 1.2e-35 152.9 97 74.2
Aqoxy6G01756 Aquilegia oxysepala HOM05D001461 ORTHO05D005534 1.6e-35 152.5 94 79.8
Aqoxy6G01758 Aquilegia oxysepala HOM05D001461 ORTHO05D005534 1.6e-35 152.5 94 79.8
CSS0015159 Camellia sinensis var. sinensis HOM05D001461 ORTHO05D005534 1.6e-35 152.5 99 75.8
CSS0025412 Camellia sinensis var. sinensis HOM05D001461 ORTHO05D005534 1.6e-35 152.5 99 75.8
arahy.Tifrunner.gnm1.ann1.PFJ4ZJ Arachis hypogaea HOM05D001461 ORTHO05D005534 2.7e-35 151.8 97 77.3
arahy.Tifrunner.gnm1.ann1.Z0SXD6 Arachis hypogaea HOM05D001461 ORTHO05D005534 2.7e-35 151.8 97 77.3
LjContig00001g0001336 Lotus japonicus HOM05D001461 ORTHO05D005534 2.7e-35 151.8 99 74.7
LjContig00001g0023327 Lotus japonicus HOM05D001461 ORTHO05D005534 2.7e-35 151.8 99 74.7
LjContig00312_ERROPOS870357g0027559 Lotus japonicus HOM05D001461 ORTHO05D005534 2.7e-35 151.8 97 78.4
MBI07_g06330_MAGBIO Magnolia biondii HOM05D001461 ORTHO05D005534 3.6e-35 151.4 96 78.1
Solyc11g062280.2 Solanum lycopersicum HOM05D001461 ORTHO05D005534 3.6e-35 151.4 97 77.3
Sopen11g024260 Solanum pennellii HOM05D001461 ORTHO05D005534 3.6e-35 151.4 97 77.3
PGSC0003DMG401032495 Solanum tuberosum HOM05D001461 ORTHO05D005534 3.6e-35 151.4 97 77.3
HPP92_002836 Vanilla planifolia HOM05D001461 ORTHO05D005534 3.6e-35 151.4 97 74.2
Carub.0002s0062 Capsella rubella HOM05D001461 ORTHO05D005534 4.7e-35 151.0 100 75.0
FAN28G0268 Fragaria x ananassa HOM05D001461 ORTHO05D005534 4.7e-35 151.0 96 72.9
Thecc.02G012600 Theobroma cacao HOM05D001461 ORTHO05D005534 6.1e-35 150.6 99 72.7
ATR0580G205 Amborella trichopoda HOM05D001461 ORTHO05D005534 7.9e-35 150.2 94 79.8
CARHR212880 Cardamine hirsuta HOM05D001461 ORTHO05D005534 7.9e-35 150.2 99 72.7
HanXRQChr04g0120651 Helianthus annuus HOM05D001461 ORTHO05D005534 7.9e-35 150.2 97 75.3
PGSC0003DMG400007048 Solanum tuberosum HOM05D001461 ORTHO05D005534 7.9e-35 150.2 97 76.3
TPR.G6688 Trifolium pratense HOM05D001461 ORTHO05D005534 7.9e-35 150.2 97 76.3
CARHR046740 Cardamine hirsuta HOM05D001461 ORTHO05D005534 1.0e-34 149.8 100 75.0
FAN18G4081 Fragaria x ananassa HOM05D001461 ORTHO05D005534 1.0e-34 149.8 96 75.0
MBI15_g19879_MAGBIO Magnolia biondii HOM05D001461 ORTHO05D005534 1.4e-34 149.4 96 77.1
EL10Ac1g00327 Beta vulgaris HOM05D001461 ORTHO05D005534 1.8e-34 149.1 99 71.7
Glyma.01G223800 Glycine max HOM05D001461 ORTHO05D005534 1.8e-34 149.1 97 75.3
Nitab4.5_0000492g0140 Nicotiana tabacum HOM05D001461 ORTHO05D005534 1.8e-34 149.1 97 76.3
AL2G10830 Arabidopsis lyrata HOM05D001461 ORTHO05D005534 2.3e-34 148.7 100 73.0
Thhalv10023764m.g Eutrema salsugineum HOM05D001461 ORTHO05D005534 2.3e-34 148.7 100 75.0
Peaxi162Scf00029g02519 Petunia axillaris HOM05D001461 ORTHO05D005534 2.3e-34 148.7 97 76.3
Phvul.002G161800 Phaseolus vulgaris HOM05D001461 ORTHO05D005534 2.3e-34 148.7 98 75.5
BcaB07g31442 Brassica carinata HOM05D001461 ORTHO05D005534 3.0e-34 148.3 100 74.0
BcaB07g31521 Brassica carinata HOM05D001461 ORTHO05D005534 3.0e-34 148.3 100 74.0
Thhalv10027655m.g Eutrema salsugineum HOM05D001461 ORTHO05D002801 3.0e-34 148.3 99 72.7
Nitab4.5_0002026g0080 Nicotiana tabacum HOM05D001461 ORTHO05D005534 3.0e-34 148.3 97 75.3
CAN.G375.83 Capsicum annuum HOM05D001461 ORTHO05D005534 5.2e-34 147.5 97 74.2
Glyma.11G019700 Glycine max HOM05D001461 ORTHO05D005534 5.2e-34 147.5 98 73.5
VMungo1215G2099 Vigna mungo HOM05D001461 ORTHO05D005534 5.2e-34 147.5 98 74.5
Aa31LG2G1220 Aethionema arabicum HOM05D001461 ORTHO05D002801 6.7e-34 147.1 100 73.0
A09p14930 Brassica napus HOM05D001461 ORTHO05D005534 6.7e-34 147.1 100 73.0
BraA09t37138Z Brassica rapa HOM05D001461 ORTHO05D005534 6.7e-34 147.1 100 73.0
Gohir.A12G232000 Gossypium hirsutum HOM05D001461 ORTHO05D005534 6.7e-34 147.1 97 73.2
Gohir.D12G235300 Gossypium hirsutum HOM05D001461 ORTHO05D005534 6.7e-34 147.1 97 73.2
Gorai.008G251500 Gossypium raimondii HOM05D001461 ORTHO05D005534 6.7e-34 147.1 97 73.2
Sed0026937 Sechium edule HOM05D001461 ORTHO05D005534 6.7e-34 147.1 96 75.0
A09p14170 Brassica napus HOM05D001461 ORTHO05D005534 8.8e-34 146.7 100 73.0
BraA09t37065Z Brassica rapa HOM05D001461 ORTHO05D005534 8.8e-34 146.7 100 73.0
BcaC04g22537 Brassica carinata HOM05D001461 ORTHO05D005534 1.1e-33 146.4 100 73.0
C09p18050 Brassica napus HOM05D001461 ORTHO05D005534 1.1e-33 146.4 100 73.0
BolC9t54702H Brassica oleracea HOM05D001461 ORTHO05D005534 1.1e-33 146.4 100 73.0
ECA236G4284 Erigeron canadensis HOM05D001461 ORTHO05D005534 1.5e-33 146.0 97 73.2
Cc03_g08310 Coffea canephora HOM05D001461 ORTHO05D005534 2.0e-33 145.6 98 75.5
DCAR_025235 Daucus carota HOM05D001461 ORTHO05D005534 2.0e-33 145.6 97 73.2
Glyma.15G246700 Glycine max HOM05D001461 ORTHO05D005534 2.0e-33 145.6 101 70.3
C09p17080 Brassica napus HOM05D001461 ORTHO05D005534 2.6e-33 145.2 100 72.0
BolC9t54606H Brassica oleracea HOM05D001461 ORTHO05D005534 2.6e-33 145.2 100 72.0
PSO384G4702 Papaver somniferum HOM05D001461 ORTHO05D005534 2.6e-33 145.2 104 70.2
Zm00001eb376190 Zea mays HOM05D001461 ORTHO05D005534 3.3e-33 144.8 100 70.0
Zm00001eb376220 Zea mays HOM05D001461 ORTHO05D005534 3.3e-33 144.8 100 70.0
Zm00001eb376260 Zea mays HOM05D001461 ORTHO05D005534 3.3e-33 144.8 100 70.0
Zm00001eb376310 Zea mays HOM05D001461 ORTHO05D005534 3.3e-33 144.8 100 70.0
Zm00001eb376910 Zea mays HOM05D001461 ORTHO05D005534 3.3e-33 144.8 100 70.0
Zm00001eb376940 Zea mays HOM05D001461 ORTHO05D005534 3.3e-33 144.8 100 70.0
AT1G64185 Arabidopsis thaliana HOM05D001461 ORTHO05D005534 4.4e-33 144.4 100 72.0
Carub.0007s3383 Capsella rubella HOM05D001461 ORTHO05D005534 4.4e-33 144.4 95 70.5
ECA233G4373 Erigeron canadensis HOM05D001461 ORTHO05D005534 4.4e-33 144.4 98 71.4
AUR62004435 Chenopodium quinoa HOM05D001461 ORTHO05D005534 5.7e-33 144.1 99 70.7
AUR62023513 Chenopodium quinoa HOM05D001461 ORTHO05D005534 5.7e-33 144.1 99 70.7
Os06g0158700 Oryza sativa ssp. japonica HOM05D001461 ORTHO05D005534 7.4e-33 143.7 99 69.7
BcaC04g22646 Brassica carinata HOM05D001461 ORTHO05D005534 9.7e-33 143.3 100 72.0
Lj4g0014781 Lotus japonicus HOM05D001461 ORTHO05D005534 9.7e-33 143.3 93 76.3
Zm00001eb376350 Zea mays HOM05D001461 ORTHO05D005534 9.7e-33 143.3 100 69.0
Nitab4.5_0004629g0090 Nicotiana tabacum HOM05D001461 ORTHO05D005534 3.7e-32 141.4 119 62.2
Sc01g0010020 Simmondsia chinensis HOM05D001461 ORTHO05D005534 1.4e-31 139.4 100 68.0
SEGI_29517 Sequoiadendron giganteum HOM05D001461 ORTHO05D005534 5.3e-31 137.5 97 67.0
Ah.07g196880 Amaranthus hybridus HOM05D001461 ORTHO05D005534 1.6e-30 136.0 100 66.0
Rhsim07G0008500 Rhododendron simsii HOM05D001461 ORTHO05D005534 1.6e-30 136.0 147 51.0
Sc01g0003060 Simmondsia chinensis HOM05D001461 ORTHO05D005534 5.9e-30 134.0 97 71.1
Lsat_1_v5_gn_5_108040 Lactuca sativa HOM05D001461 ORTHO05D005534 5.0e-29 131.0 98 70.4
Lj4g0009029 Lotus japonicus HOM05D001461 ORTHO05D005534 1.5e-28 129.4 89 73.0
Hund27230 Selenicereus undatus HOM05D001461 ORTHO05D005534 1.9e-28 129.0 95 68.4
MD08G1128900 Malus domestica HOM05D001461 ORTHO05D005534 1.0e-26 123.2 97 67.0
AagrBONN_evm.TU.Sc2ySwM_344.4522 Anthoceros agrestis HOM05D001461 ORTHO05D005534 1.5e-25 119.4 96 61.5
SMO364G0470 Selaginella moellendorffii HOM05D001461 ORTHO05D005534 9.7e-25 116.7 97 58.8
TPR.G32972 Trifolium pratense HOM05D001461 ORTHO05D005534 1.3e-24 116.3 77 75.3
Pp3c1_2350 Physcomitrium patens HOM05D001461 ORTHO05D005534 1.1e-23 113.2 96 56.2
Mapoly0143s0026 Marchantia polymorpha HOM05D001461 ORTHO05D005534 1.5e-20 102.8 97 49.5
MD08G1130100 Malus domestica HOM05D001461 ORTHO05D005534 5.2e-18 94.4 83 60.2
Cfa012281 Carpinus fangiana HOM05D001461 ORTHO05D005534 7.5e-17 90.5 50 82.0
QL02p032078 Quercus lobata HOM05D001461 ORTHO05D005534 1.3e-16 89.7 50 80.0
Oeu054373.3 Olea europaea HOM05D000540 ORTHO05D000681 2.8e-16 88.6 45 93.3
Zm00001eb376320 Zea mays HOM05D001461 ORTHO05D005534 8.3e-16 87.0 50 76.0
arahy.Tifrunner.gnm1.ann1.2LVS12 Arachis hypogaea HOM05D001461 ORTHO05D005534 1.4e-15 86.3 48 79.2
MD14G1117200 Malus domestica HOM05D001461 ORTHO05D005534 1.4e-15 86.3 49 75.5
Actinidia28489 Actinidia chinensis HOM05D001461 ORTHO05D005534 4.1e-15 84.7 48 79.2
vmacro13208 Vaccinium macrocarpon HOM05D001461 ORTHO05D005534 1.3e-13 79.7 44 84.1
arahy.Tifrunner.gnm1.ann1.F4HMTZ Arachis hypogaea HOM05D001461 ORTHO05D005534 2.9e-13 78.6 50 80.0
FAN13G0962 Fragaria x ananassa HOM05D001461 ORTHO05D005534 2.9e-13 78.6 45 82.2
Oeu063667.1 Olea europaea HOM05D001461 ORTHO05D005534 2.9e-13 78.6 44 86.4
Glyma.06G264500 Glycine max HOM05D001461 ORTHO05D005534 3.8e-13 78.2 48 79.2
Lj9C594G4 Lonicera japonica HOM05D001461 ORTHO05D005534 1.1e-12 76.6 45 77.8
arahy.Tifrunner.gnm1.ann1.NAT0LD Arachis hypogaea HOM05D001461 ORTHO05D005534 1.9e-12 75.9 50 78.0
Ciclev10022889m.g Citrus clementina HOM05D001461 ORTHO05D005534 1.9e-12 75.9 45 82.2
RcHm_v2.0_Chr5g0061641 Rosa chinensis HOM05D001461 ORTHO05D005534 6.1e-11 70.9 39 84.6
Glyma.05G213500 Glycine max HOM05D001461 ORTHO05D005534 8.0e-11 70.5 42 81.0
Zm00001eb376250 Zea mays HOM05D001461 ORTHO05D005534 1.0e-10 70.1 52 65.4
MCO07G452 Micromonas commoda HOM05D001461 ORTHO05D005534 6.8e-10 67.4 114 34.2
Glyma.08G020100 Glycine max HOM05D001461 ORTHO05D005534 2.0e-09 65.9 48 66.7
Sopen07g030150 Solanum pennellii HOM05D018748 ORTHO05D009630 5.7e-09 64.3 35 85.7
PRCOL_00003773 Prasinoderma coloniale HOM05D001461 ORTHO05D005534 4.9e-08 61.2 119 33.6
MD08G1129600 Malus domestica HOM05D001461 ORTHO05D005534 4.5e-06 54.7 96 41.7
Solyc07g061860.3 Solanum lycopersicum HOM05D001461 ORTHO05D051078 5.9e-06 54.3 29 79.3


User provided reference genes

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