Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Migut.E01045 Erythranthe guttata HOM05D005346 ORTHO05D007051 2.2e-126 455.7 236 100.0
unitig_749.g13414 Utricularia gibba HOM05D005346 ORTHO05D007051 3.2e-93 345.5 235 75.7
MSTRG.25547 Avicennia marina HOM05D005346 ORTHO05D007051 5.1e-91 338.2 246 75.2
Oeu016508.1 Olea europaea HOM05D005346 ORTHO05D007051 1.8e-83 313.2 246 68.3
MSTRG.12059 Avicennia marina HOM05D005346 ORTHO05D007051 6.3e-81 304.7 231 71.4
SGA_v2.0_scaffold120G32813 Striga asiatica HOM05D002260 ORTHO05D000476 1.5e-79 300.1 229 72.1
SGA_v2.0_scaffold146G36182 Striga asiatica HOM05D005346 ORTHO05D007051 7.7e-79 297.7 254 66.9
SalBow6G4970 Salvia bowleyana HOM05D005346 ORTHO05D007051 1.2e-76 290.4 315 55.9
SGA_v2.0_scaffold196G40944 Striga asiatica HOM05D005346 ORTHO05D007051 1.4e-75 287.0 230 67.8
Migut.E01266 Erythranthe guttata HOM05D005346 ORTHO05D007051 2.8e-73 279.3 139 99.3
CSS0033087 Camellia sinensis var. sinensis HOM05D005346 ORTHO05D007051 8.2e-73 277.7 242 64.9
CAN.G630.80 Capsicum annuum HOM05D005346 ORTHO05D007051 7.7e-71 271.2 253 60.5
Dinv39076 Davidia involucrata HOM05D005346 ORTHO05D007051 1.0e-70 270.8 252 63.1
Solyc08g079490.4 Solanum lycopersicum HOM05D005346 ORTHO05D007051 1.1e-69 267.3 248 61.3
Sopen08g027860 Solanum pennellii HOM05D005346 ORTHO05D007051 1.9e-69 266.5 248 60.5
CSS0047104 Camellia sinensis var. sinensis HOM05D005346 ORTHO05D007051 1.6e-68 263.5 249 60.6
Cc08_g13250 Coffea canephora HOM05D005346 ORTHO05D007051 2.1e-68 263.1 248 62.1
PGSC0003DMG400003934 Solanum tuberosum HOM05D005346 ORTHO05D007051 3.6e-68 262.3 269 56.9
CSS0010264 Camellia sinensis var. sinensis HOM05D005346 ORTHO05D007051 7.9e-68 261.2 249 60.2
Actinidia02088 Actinidia chinensis HOM05D005346 ORTHO05D007051 1.4e-67 260.4 252 61.1
Nitab4.5_0012948g0030 Nicotiana tabacum HOM05D005346 ORTHO05D007051 7.4e-66 254.6 258 58.1
DCAR_006800 Daucus carota HOM05D005346 ORTHO05D007051 3.7e-65 252.3 232 59.1
Rhsim07G0101400 Rhododendron simsii HOM05D005346 ORTHO05D007051 3.7e-65 252.3 247 60.3
Eucgr.E00475 Eucalyptus grandis HOM05D005346 ORTHO05D007051 1.8e-64 250.0 243 62.1
Peaxi162Scf00271g00130 Petunia axillaris HOM05D005346 ORTHO05D007051 2.4e-64 249.6 241 60.2
PSO478G1917 Papaver somniferum HOM05D005346 ORTHO05D007051 2.2e-62 243.0 239 57.7
MBI12_g34008_MAGBIO Magnolia biondii HOM05D005346 ORTHO05D007051 2.9e-62 242.7 219 63.5
Cpa.g.sc29.89 Carica papaya HOM05D005346 ORTHO05D007051 6.5e-62 241.5 196 66.8
Haze_09052 Corylus avellana HOM05D005346 ORTHO05D007051 8.5e-62 241.1 242 58.7
AUR62010513 Chenopodium quinoa HOM05D005346 ORTHO05D007051 1.1e-61 240.7 244 57.4
GSVIVG01004909001 Vitis vinifera HOM05D005346 ORTHO05D007051 1.1e-61 240.7 246 58.5
Lsat_1_v5_gn_6_9800 Lactuca sativa HOM05D005346 ORTHO05D007051 1.9e-61 240.0 230 60.4
Potri.003G115300 Populus trichocarpa HOM05D005346 ORTHO05D007051 1.9e-61 240.0 240 60.8
AUR62017389 Chenopodium quinoa HOM05D005346 ORTHO05D007051 3.2e-61 239.2 245 58.0
Nn4g26377 Nelumbo nucifera HOM05D005346 ORTHO05D007051 4.2e-61 238.8 245 60.0
Atru.chr9.1434 Acer truncatum HOM05D005346 ORTHO05D007051 5.5e-61 238.4 252 57.9
Cfa012017 Carpinus fangiana HOM05D005346 ORTHO05D007051 5.5e-61 238.4 195 67.2
vmacro14041 Vaccinium macrocarpon HOM05D005346 ORTHO05D007051 5.5e-61 238.4 217 62.7
EL10Ac5g12617 Beta vulgaris HOM05D005346 ORTHO05D007051 1.2e-60 237.3 244 57.4
Duzib084G0498 Durio zibethinus HOM05D005346 ORTHO05D007051 1.6e-60 236.9 196 66.8
Sc22g0000580 Simmondsia chinensis HOM05D005346 ORTHO05D007051 2.1e-60 236.5 243 56.8
Hma1.2p1_0138F.1_g063170 Hydrangea macrophylla HOM05D005346 ORTHO05D007051 3.6e-60 235.7 195 65.6
PSO782G1275 Papaver somniferum HOM05D005346 ORTHO05D007051 3.6e-60 235.7 247 56.3
BcaC04g22452 Brassica carinata HOM05D005346 ORTHO05D007051 1.0e-59 234.2 196 63.8
A09p15920 Brassica napus HOM05D005346 ORTHO05D007051 1.0e-59 234.2 196 63.8
BraA09t37228Z Brassica rapa HOM05D005346 ORTHO05D007051 1.0e-59 234.2 196 63.8
SalBow1G0489 Salvia bowleyana HOM05D005346 ORTHO05D007051 1.0e-59 234.2 195 67.7
BolC9t54826H Brassica oleracea HOM05D005346 ORTHO05D007051 1.4e-59 233.8 196 63.8
TAR629G0356 Trochodendron aralioides HOM05D005346 ORTHO05D007051 1.4e-59 233.8 192 68.2
C09p19170 Brassica napus HOM05D005346 ORTHO05D007051 1.8e-59 233.4 196 63.8
Ciclev10021953m.g Citrus clementina HOM05D005346 ORTHO05D007051 5.2e-59 231.9 195 66.2
PGR042G0462 Punica granatum HOM05D005346 ORTHO05D007051 5.2e-59 231.9 241 57.7
CiPaw.12G104700 Carya illinoinensis HOM05D005346 ORTHO05D007051 6.7e-59 231.5 196 66.3
Gohir.A03G011800 Gossypium hirsutum HOM05D005346 ORTHO05D007051 8.8e-59 231.1 196 65.3
Manes.01G073500 Manihot esculenta HOM05D005346 ORTHO05D007051 8.8e-59 231.1 196 65.8
Gorai.003G166600 Gossypium raimondii HOM05D005346 ORTHO05D007051 1.1e-58 230.7 196 65.8
Sabra03G0079900 Salix brachista HOM05D005346 ORTHO05D007051 1.1e-58 230.7 180 70.6
HanXRQChr17g0549091 Helianthus annuus HOM05D005346 ORTHO05D007051 1.5e-58 230.3 246 55.3
TWI60G0731 Tripterygium wilfordii HOM05D005346 ORTHO05D007051 1.5e-58 230.3 196 63.3
Thhalv10023661m.g Eutrema salsugineum HOM05D005346 ORTHO05D007051 2.0e-58 229.9 250 56.0
THA.LOC104809446 Tarenaya hassleriana HOM05D005346 ORTHO05D007051 2.6e-58 229.6 222 58.6
QL05p030033 Quercus lobata HOM05D005346 ORTHO05D007051 7.5e-58 228.0 195 65.1
QL12p015018 Quercus lobata HOM05D005346 ORTHO05D007051 7.5e-58 228.0 195 65.1
BcaB07g31363 Brassica carinata HOM05D005346 ORTHO05D007051 9.7e-58 227.6 198 63.1
FAN04G2793 Fragaria x ananassa HOM05D000062 ORTHO05D007051 9.7e-58 227.6 236 56.4
ATR0579G161 Amborella trichopoda HOM05D005346 ORTHO05D007051 1.3e-57 227.3 221 62.0
RcHm_v2.0_Chr7g0201521 Rosa chinensis HOM05D005346 ORTHO05D007051 1.3e-57 227.3 238 56.7
FvH4_5g00690 Fragaria vesca HOM05D005346 ORTHO05D007051 1.7e-57 226.9 236 55.9
Lalb_Chr05g0225391 Lupinus albus HOM05D005346 ORTHO05D007051 2.2e-57 226.5 233 56.7
Prupe.5G079700 Prunus persica HOM05D005346 ORTHO05D007051 2.2e-57 226.5 238 56.7
MD04G1079400 Malus domestica HOM05D005346 ORTHO05D007051 4.8e-57 225.3 243 57.2
Sabra01G0090200 Salix brachista HOM05D005346 ORTHO05D007051 4.8e-57 225.3 180 71.1
Carub.0002s0213 Capsella rubella HOM05D005346 ORTHO05D007051 8.2e-57 224.6 200 60.0
Lj4g0017997 Lotus japonicus HOM05D005346 ORTHO05D007051 1.4e-56 223.8 196 63.8
FAN13G0616 Fragaria x ananassa HOM05D005346 ORTHO05D007051 1.8e-56 223.4 236 55.1
Potri.001G117500 Populus trichocarpa HOM05D005346 ORTHO05D007051 1.8e-56 223.4 192 65.6
CANSAT21G2498 Cannabis sativa HOM05D005346 ORTHO05D007051 5.3e-56 221.9 192 65.1
HPP92_003521 Vanilla planifolia HOM05D005346 ORTHO05D007051 5.3e-56 221.9 225 54.7
arahy.Tifrunner.gnm1.ann1.FP1HKG Arachis hypogaea HOM05D005346 ORTHO05D007051 7.0e-56 221.5 201 61.7
Psat4g068640 Pisum sativum HOM05D005346 ORTHO05D007051 7.0e-56 221.5 228 58.8
Hund28689 Selenicereus undatus HOM05D005346 ORTHO05D007051 7.0e-56 221.5 229 56.8
Hund28691 Selenicereus undatus HOM05D005346 ORTHO05D007051 7.0e-56 221.5 229 56.8
MELO3C013984.2 Cucumis melo HOM05D005346 ORTHO05D007051 9.1e-56 221.1 224 58.0
Glyma.17G135200 Glycine max HOM05D005346 ORTHO05D007051 1.2e-55 220.7 234 56.0
AL2G12910 Arabidopsis lyrata HOM05D005346 ORTHO05D007051 2.0e-55 219.9 197 60.4
CsaV3_3G003190 Cucumis sativus L. HOM05D005346 ORTHO05D007051 3.5e-55 219.2 222 57.7
COL.COLO4_23877 Corchorus olitorius HOM05D005346 ORTHO05D007051 4.5e-55 218.8 214 59.3
Zm00001eb010680 Zea mays HOM05D005346 ORTHO05D007051 4.5e-55 218.8 199 61.3
CDE11G0613 Ceratophyllum demersum HOM05D005346 ORTHO05D007051 1.3e-54 217.2 197 61.4
Medtr4g102230 Medicago truncatula HOM05D005346 ORTHO05D007051 1.3e-54 217.2 228 56.6
Aa31LG2G370 Aethionema arabicum HOM05D005346 ORTHO05D007051 1.7e-54 216.9 197 60.4
Aqoxy7G00648 Aquilegia oxysepala HOM05D005346 ORTHO05D007051 1.7e-54 216.9 206 58.7
VMungo1215G1290 Vigna mungo HOM05D005346 ORTHO05D007051 2.9e-54 216.1 227 56.4
AT1G62850 Arabidopsis thaliana HOM05D005346 ORTHO05D007051 3.8e-54 215.7 193 61.1
CARHR048890 Cardamine hirsuta HOM05D005346 ORTHO05D007051 3.8e-54 215.7 249 53.4
ECA233G1833 Erigeron canadensis HOM05D005346 ORTHO05D007051 3.8e-54 215.7 198 59.6
Lj8A255T54 Lonicera japonica HOM05D005346 ORTHO05D007051 6.5e-54 214.9 268 51.1
Sp2g01760 Schrenkiella parvula HOM05D005346 ORTHO05D007051 8.5e-54 214.5 198 59.6
Sed0008355 Sechium edule HOM05D005346 ORTHO05D007051 8.5e-54 214.5 250 52.4
Phvul.003G215000 Phaseolus vulgaris HOM05D005346 ORTHO05D007051 1.9e-53 213.4 194 61.3
TAR629G0085 Trochodendron aralioides HOM05D005346 ORTHO05D007051 2.1e-52 209.9 182 65.4
SEGI_23485 Sequoiadendron giganteum HOM05D005346 ORTHO05D007051 5.7e-50 201.8 180 62.2
Glyma.05G052900 Glycine max HOM05D005346 ORTHO05D007051 1.6e-47 193.7 214 55.6
Thecc.03G262000 Theobroma cacao HOM05D005346 ORTHO05D007051 4.5e-47 192.2 136 72.1
Pp3c9_5680 Physcomitrium patens HOM05D005346 ORTHO05D007051 1.0e-46 191.0 193 53.4
Ca_12281_v3 Cicer arietinum L. HOM05D002260 ORTHO05D007051 2.9e-46 189.5 163 64.4
Os03g0249200 Oryza sativa ssp. japonica HOM05D005346 ORTHO05D007051 4.2e-45 185.7 193 56.0
ClCG10G003160 Citrullus lanatus HOM05D005346 ORTHO05D007051 6.1e-44 181.8 236 50.8
TPR.G37664 Trifolium pratense HOM05D005346 ORTHO05D007051 1.2e-42 177.6 131 71.0
Migut.H01199 Erythranthe guttata HOM05D005346 ORTHO05D007051 1.3e-41 174.1 96 89.6
CBR_g59652 Chara braunii HOM05D005346 ORTHO05D007051 5.9e-39 165.2 157 57.3
SEGI_25852 Sequoiadendron giganteum HOM05D005346 ORTHO05D007051 1.3e-38 164.1 140 66.4
Gohir.D03G158100 Gossypium hirsutum HOM05D005346 ORTHO05D007051 6.1e-36 155.2 192 50.0
Mapoly0185s0016 Marchantia polymorpha HOM05D005346 ORTHO05D007051 8.0e-36 154.8 147 56.5
arahy.Tifrunner.gnm1.ann1.IL3HUZ Arachis hypogaea HOM05D005346 ORTHO05D007051 7.8e-31 138.3 260 40.8
Nitab4.5_0001816g0160 Nicotiana tabacum HOM05D005346 ORTHO05D020323 2.3e-27 126.7 180 46.1
Sopen08g003450 Solanum pennellii HOM05D005346 ORTHO05D020323 2.6e-26 123.2 209 42.1
Gorai.005G179200 Gossypium raimondii HOM05D005346 ORTHO05D007051 4.4e-26 122.5 99 63.6
Solyc08g007490.3 Solanum lycopersicum HOM05D005346 ORTHO05D020323 4.4e-26 122.5 209 41.6
Actinidia14465 Actinidia chinensis HOM05D005346 ORTHO05D007051 9.8e-26 121.3 227 39.2
Peaxi162Scf00102g01240 Petunia axillaris HOM05D005346 ORTHO05D020323 9.8e-26 121.3 218 40.8
PRCOL_00004903 Prasinoderma coloniale HOM05D005346 ORTHO05D007051 1.3e-25 120.9 131 51.1
Gorai.011G192800 Gossypium raimondii HOM05D005346 ORTHO05D007051 4.9e-25 119.0 99 61.6
Gohir.D06G129850 Gossypium hirsutum HOM05D005346 ORTHO05D007051 1.9e-24 117.1 99 60.6
Nitab4.5_0001265g0030 Nicotiana tabacum HOM05D005346 ORTHO05D020323 1.9e-24 117.1 213 38.5
Cre02.g101800 Chlamydomonas reinhardtii HOM05D005346 ORTHO05D007051 5.4e-24 115.5 167 44.3
Gorai.002G177500 Gossypium raimondii HOM05D005346 ORTHO05D007051 1.6e-23 114.0 95 61.1
MCO12G072 Micromonas commoda HOM05D005346 ORTHO05D007051 2.7e-23 113.2 135 48.9
AagrBONN_evm.TU.Sc2ySwM_369.472 Anthoceros agrestis HOM05D005346 ORTHO05D007051 8.6e-22 108.2 73 71.2
VMungo1215G3342 Vigna mungo HOM05D005346 ORTHO05D007051 8.1e-20 101.7 105 58.1
Gohir.D13G182400 Gossypium hirsutum HOM05D005346 ORTHO05D007051 1.8e-19 100.5 75 65.3
SMO164G0226 Selaginella moellendorffii HOM05D005346 ORTHO05D007051 1.2e-18 97.8 163 39.9
SEGI_00698 Sequoiadendron giganteum HOM05D005346 ORTHO05D007051 5.8e-18 95.5 92 60.9
Haze_26312 Corylus avellana HOM05D005346 ORTHO05D007051 2.1e-15 87.0 151 37.7
SMO353G0412 Selaginella moellendorffii HOM05D000596 ORTHO05D001497 1.7e-14 84.0 203 33.0
CAN.G1394.34 Capsicum annuum HOM05D005346 ORTHO05D020323 7.3e-13 78.6 118 45.8
PGSC0003DMG400012509 Solanum tuberosum HOM05D005346 ORTHO05D020323 4.4e-10 69.3 180 33.3
SMO364G0639 Selaginella moellendorffii HOM05D000596 ORTHO05D001497 2.4e-08 63.5 123 35.8
Actinidia02087 Actinidia chinensis HOM05D005346 ORTHO05D007051 1.2e-07 61.2 95 38.9
Lj6g0026400 Lotus japonicus HOM05D005346 ORTHO05D007051 4.6e-07 59.3 51 62.7
Nitab4.5_0003534g0100 Nicotiana tabacum HOM05D005346 ORTHO05D007051 1.0e-06 58.2 111 38.7
TPR.G941 Trifolium pratense HOM05D005346 ORTHO05D007051 3.0e-06 56.6 53 62.3


User provided reference genes

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