Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Migut.E00942 Erythranthe guttata HOM05D004742 ORTHO05D005677 1.0e-111 406.8 201 100.0
SalBow6G3311 Salvia bowleyana HOM05D004742 ORTHO05D005677 3.3e-62 242.3 221 63.3
MSTRG.12162 Avicennia marina HOM05D004742 ORTHO05D005677 2.7e-56 222.6 210 59.5
Oeu006253.1 Olea europaea HOM05D004742 ORTHO05D005677 5.8e-51 204.9 231 51.1
SGA_v2.0_scaffold6G03142 Striga asiatica HOM05D004742 ORTHO05D005677 1.7e-50 203.4 202 57.9
PGSC0003DMG400017538 Solanum tuberosum HOM05D004742 ORTHO05D005677 7.3e-46 188.0 246 47.6
Sopen08g025400 Solanum pennellii HOM05D004742 ORTHO05D005677 4.7e-45 185.3 249 46.6
Solyc08g076870.1 Solanum lycopersicum HOM05D004742 ORTHO05D005677 6.2e-45 184.9 249 46.2
SGA_v2.0_scaffold20G09271 Striga asiatica HOM05D004742 ORTHO05D005677 6.2e-45 184.9 202 54.0
Dinv25223 Davidia involucrata HOM05D004742 ORTHO05D005677 1.4e-41 173.7 234 48.3
Nitab4.5_0010403g0010 Nicotiana tabacum HOM05D004742 ORTHO05D005677 1.6e-40 170.2 251 41.8
Actinidia03372 Actinidia chinensis HOM05D004742 ORTHO05D005677 2.8e-37 159.5 242 45.0
Nitab4.5_0000529g0010 Nicotiana tabacum HOM05D004742 ORTHO05D005677 2.8e-37 159.5 254 42.1
Duzib205G0563 Durio zibethinus HOM05D004742 ORTHO05D005677 8.1e-37 157.9 238 44.1
Actinidia14802 Actinidia chinensis HOM05D004742 ORTHO05D005677 1.8e-36 156.8 231 46.3
Thecc.03G226400 Theobroma cacao HOM05D004742 ORTHO05D005677 3.1e-36 156.0 234 42.7
CsaV3_3G001600 Cucumis sativus L. HOM05D004742 ORTHO05D005677 6.8e-36 154.8 234 45.3
Lsat_1_v5_gn_3_18001 Lactuca sativa HOM05D004742 ORTHO05D005677 6.8e-36 154.8 256 41.0
Prupe.5G034500 Prunus persica HOM05D004742 ORTHO05D005677 6.8e-36 154.8 240 44.2
VMungo1215G1913 Vigna mungo HOM05D004742 ORTHO05D005677 1.5e-35 153.7 241 44.0
Hma1.2p1_0303F.1_g119030 Hydrangea macrophylla HOM05D004742 ORTHO05D005677 3.4e-35 152.5 239 46.0
Phvul.002G140700 Phaseolus vulgaris HOM05D004742 ORTHO05D005677 3.4e-35 152.5 241 43.6
FAN04G2756 Fragaria x ananassa HOM05D004742 ORTHO05D005677 1.3e-34 150.6 227 44.5
FAN13G2654 Fragaria x ananassa HOM05D004742 ORTHO05D005677 1.3e-34 150.6 227 44.5
arahy.Tifrunner.gnm1.ann1.EZQY9P Arachis hypogaea HOM05D004742 ORTHO05D005677 2.9e-34 149.4 238 45.4
arahy.Tifrunner.gnm1.ann1.RMRK9P Arachis hypogaea HOM05D004742 ORTHO05D005677 2.9e-34 149.4 238 45.4
MELO3C027362.2 Cucumis melo HOM05D004742 ORTHO05D005677 2.9e-34 149.4 236 43.2
Glyma.09G205100 Glycine max HOM05D004742 ORTHO05D005677 2.9e-34 149.4 242 44.6
PGR031G2228 Punica granatum HOM05D004742 ORTHO05D005677 2.9e-34 149.4 257 40.9
Glyma.01G017800 Glycine max HOM05D004742 ORTHO05D005677 6.4e-34 148.3 239 43.1
COL.COLO4_17015 Corchorus olitorius HOM05D004742 ORTHO05D005677 1.4e-33 147.1 232 42.2
Lalb_Chr09g0325611 Lupinus albus HOM05D004742 ORTHO05D005677 1.4e-33 147.1 237 45.1
Cc08_g02870 Coffea canephora HOM05D004742 ORTHO05D005677 1.9e-33 146.7 253 41.1
FvH4_5g22200 Fragaria vesca HOM05D004742 ORTHO05D005677 1.9e-33 146.7 226 43.4
FAN08G0406 Fragaria x ananassa HOM05D004742 ORTHO05D005677 1.9e-33 146.7 226 43.4
TWI60G1233 Tripterygium wilfordii HOM05D004742 ORTHO05D005677 2.4e-33 146.4 242 41.3
Duzib068G0638 Durio zibethinus HOM05D004742 ORTHO05D005677 4.1e-33 145.6 228 41.2
Manes.15G188900 Manihot esculenta HOM05D004742 ORTHO05D005677 5.4e-33 145.2 229 42.4
TPR.G1023 Trifolium pratense HOM05D004742 ORTHO05D005677 7.1e-33 144.8 241 44.0
Gohir.A08G156100 Gossypium hirsutum HOM05D004742 ORTHO05D005677 1.2e-32 144.1 235 43.0
Gohir.A09G199100 Gossypium hirsutum HOM05D004742 ORTHO05D005677 1.2e-32 144.1 231 41.6
ClCG10G001520 Citrullus lanatus HOM05D004742 ORTHO05D005677 2.1e-32 143.3 240 44.2
Duzib084G1225 Durio zibethinus HOM05D004742 ORTHO05D005677 3.5e-32 142.5 234 41.5
Gohir.A11G030800 Gossypium hirsutum HOM05D004742 ORTHO05D005677 3.5e-32 142.5 234 42.3
Eucgr.D02205 Eucalyptus grandis HOM05D004742 ORTHO05D005677 1.7e-31 140.2 242 39.7
FAN18G2180 Fragaria x ananassa HOM05D004742 ORTHO05D005677 1.7e-31 140.2 226 42.0
Hma1.2p1_0574F.1_g181490 Hydrangea macrophylla HOM05D004742 ORTHO05D005677 1.7e-31 140.2 252 40.5
Duzib084G0476 Durio zibethinus HOM05D004742 ORTHO05D005677 2.3e-31 139.8 234 41.5
Gorai.007G032300 Gossypium raimondii HOM05D004742 ORTHO05D005677 2.3e-31 139.8 230 42.2
Nn1g00114 Nelumbo nucifera HOM05D004742 ORTHO05D005677 2.3e-31 139.8 233 39.9
CSS0004262 Camellia sinensis var. sinensis HOM05D004742 ORTHO05D005677 3.0e-31 139.4 230 41.3
CSS0028083 Camellia sinensis var. sinensis HOM05D004742 ORTHO05D005677 3.0e-31 139.4 230 40.0
Gohir.D08G176700 Gossypium hirsutum HOM05D004742 ORTHO05D005677 3.0e-31 139.4 233 40.8
Gorai.004G184600 Gossypium raimondii HOM05D004742 ORTHO05D005677 3.0e-31 139.4 233 40.8
Gorai.006G216900 Gossypium raimondii HOM05D004742 ORTHO05D005677 3.0e-31 139.4 232 40.9
Manes.17G011300 Manihot esculenta HOM05D004742 ORTHO05D005677 5.1e-31 138.7 233 38.2
QL12p005003 Quercus lobata HOM05D004742 ORTHO05D005677 5.1e-31 138.7 238 42.4
MD06G1035300 Malus domestica HOM05D004742 ORTHO05D005677 1.1e-30 137.5 238 39.1
Medtr5g030210 Medicago truncatula HOM05D004742 ORTHO05D005677 1.1e-30 137.5 240 41.7
Medtr5g430370 Medicago truncatula HOM05D004742 ORTHO05D005677 1.1e-30 137.5 240 41.7
CSS0042903 Camellia sinensis var. sinensis HOM05D004742 ORTHO05D005677 1.9e-30 136.7 219 42.9
Gohir.D09G193400 Gossypium hirsutum HOM05D004742 ORTHO05D005677 2.5e-30 136.3 232 40.1
Gohir.D11G029500 Gossypium hirsutum HOM05D004742 ORTHO05D005677 2.5e-30 136.3 234 42.3
HanXRQChr17g0536221 Helianthus annuus HOM05D004742 ORTHO05D005677 5.6e-30 135.2 251 38.6
Ca_06086_v3 Cicer arietinum L. HOM05D004742 ORTHO05D005677 7.3e-30 134.8 236 39.8
Potri.003G092700 Populus trichocarpa HOM05D004742 ORTHO05D005677 7.3e-30 134.8 229 40.2
TAR636G0473 Trochodendron aralioides HOM05D004742 ORTHO05D005677 7.3e-30 134.8 225 41.8
HanXRQChr06g0167541 Helianthus annuus HOM05D004742 ORTHO05D005677 1.6e-29 133.7 232 39.7
Lj3A410T15 Lonicera japonica HOM05D004742 ORTHO05D005677 2.1e-29 133.3 226 43.4
Rhsim07G0128300 Rhododendron simsii HOM05D004742 ORTHO05D005677 2.8e-29 132.9 222 41.9
RcHm_v2.0_Chr7g0209881 Rosa chinensis HOM05D004742 ORTHO05D005677 3.6e-29 132.5 235 40.9
Actinidia25968 Actinidia chinensis HOM05D004742 ORTHO05D005677 8.1e-29 131.3 244 38.5
CANSAT21G2184 Cannabis sativa HOM05D004742 ORTHO05D005677 8.1e-29 131.3 236 41.1
MD16G1273500 Malus domestica HOM05D004742 ORTHO05D005677 8.1e-29 131.3 238 39.1
Potri.001G141600 Populus trichocarpa HOM05D004742 ORTHO05D005677 8.1e-29 131.3 234 39.3
Sabra03G0062000 Salix brachista HOM05D004742 ORTHO05D001134 1.1e-28 131.0 216 42.1
Rhsim11G0016100 Rhododendron simsii HOM05D004742 ORTHO05D005677 4.0e-28 129.0 187 43.3
Ah.12g055130 Amaranthus hybridus HOM05D004742 ORTHO05D005677 5.2e-28 128.6 224 39.7
CiPaw.12G064300 Carya illinoinensis HOM05D004742 ORTHO05D005677 3.4e-27 125.9 231 40.3
Ciclev10016629m.g Citrus clementina HOM05D004742 ORTHO05D005677 3.4e-27 125.9 240 37.9
Lj2g0023551 Lotus japonicus HOM05D004742 ORTHO05D005677 3.4e-27 125.9 230 39.6
Atru.chr6.1683 Acer truncatum HOM05D004742 ORTHO05D005677 9.9e-27 124.4 229 38.4
DCAR_008263 Daucus carota HOM05D004742 ORTHO05D005677 9.9e-27 124.4 246 37.8
Cfa012451 Carpinus fangiana HOM05D004742 ORTHO05D005677 2.2e-26 123.2 225 39.6
Psat2g136480 Pisum sativum HOM05D004742 ORTHO05D005677 2.2e-26 123.2 240 37.9
CiPaw.11G094200 Carya illinoinensis HOM05D004742 ORTHO05D005677 2.9e-26 122.9 237 39.2
DCAR_032208 Daucus carota HOM05D004742 ORTHO05D005677 4.9e-26 122.1 212 39.6
Haze_08216 Corylus avellana HOM05D004742 ORTHO05D005677 1.1e-25 120.9 228 39.0
Nitab4.5_0008566g0010 Nicotiana tabacum HOM05D004742 ORTHO05D005677 1.9e-25 120.2 193 40.4
DCAR_004297 Daucus carota HOM05D004742 ORTHO05D005677 4.2e-25 119.0 219 38.8
CSS0044674 Camellia sinensis var. sinensis HOM05D004742 ORTHO05D005677 7.1e-25 118.2 215 38.1
Lsat_1_v5_gn_6_421 Lactuca sativa HOM05D004742 ORTHO05D005677 7.1e-25 118.2 249 34.5
Lalb_Chr16g0381321 Lupinus albus HOM05D004742 ORTHO05D005677 3.5e-24 115.9 218 39.9
EL10Ac5g12098 Beta vulgaris HOM05D004742 ORTHO05D005677 3.0e-23 112.8 218 37.2
THA.LOC104814447 Tarenaya hassleriana HOM05D004742 ORTHO05D005677 3.0e-23 112.8 240 33.8
TAR374G0395 Trochodendron aralioides HOM05D004742 ORTHO05D005677 3.9e-23 112.5 239 37.2
Sed0001883 Sechium edule HOM05D004742 ORTHO05D005677 5.1e-23 112.1 236 36.4
THA.LOC104812742 Tarenaya hassleriana HOM05D004742 ORTHO05D005677 2.8e-21 106.3 231 32.5
TAR629G2541 Trochodendron aralioides HOM05D004742 ORTHO05D005677 3.6e-21 105.9 153 41.2
Nitab4.5_0006434g0030 Nicotiana tabacum HOM05D004742 ORTHO05D005677 1.1e-20 104.4 163 42.3
Solyc08g005090.2 Solanum lycopersicum HOM05D004742 ORTHO05D005677 9.0e-20 101.3 82 62.2
Sopen08g001110 Solanum pennellii HOM05D004742 ORTHO05D005677 9.0e-20 101.3 82 62.2
EL10Ac5g12097 Beta vulgaris HOM05D004742 ORTHO05D005677 1.7e-18 97.1 203 34.5
Aa31LG9G15210 Aethionema arabicum HOM05D004742 ORTHO05D005677 3.8e-18 95.9 242 32.6
Thhalv10008795m.g Eutrema salsugineum HOM05D004742 ORTHO05D005677 3.8e-18 95.9 242 33.1
PGSC0003DMG400017843 Solanum tuberosum HOM05D004742 ORTHO05D005677 1.1e-17 94.4 87 59.8
Sp4g17420 Schrenkiella parvula HOM05D004742 ORTHO05D005677 2.4e-17 93.2 218 34.9
HanXRQChr12g0360911 Helianthus annuus HOM05D004742 ORTHO05D005677 3.2e-17 92.8 231 34.6
CARHR032080 Cardamine hirsuta HOM05D004742 ORTHO05D005677 9.3e-17 91.3 236 31.8
Aqoxy3G02336 Aquilegia oxysepala HOM05D004742 ORTHO05D005677 2.7e-16 89.7 256 34.0
Thhalv10017262m.g Eutrema salsugineum HOM05D004742 ORTHO05D005677 6.0e-16 88.6 214 33.6
AUR62018706 Chenopodium quinoa HOM05D004742 ORTHO05D005677 1.3e-15 87.4 204 35.8
Aa31LG2G13280 Aethionema arabicum HOM05D004742 ORTHO05D005677 1.7e-15 87.0 245 31.4
BcaB03g13715 Brassica carinata HOM05D004742 ORTHO05D005677 3.0e-15 86.3 229 31.0
BolC3t19547H Brassica oleracea HOM05D004742 ORTHO05D005677 5.1e-15 85.5 209 34.0
BcaC01g01725 Brassica carinata HOM05D004742 ORTHO05D005677 6.6e-15 85.1 229 31.4
C03p72460 Brassica napus HOM05D004742 ORTHO05D005677 6.6e-15 85.1 229 31.4
BcaC02g11593 Brassica carinata HOM05D004742 ORTHO05D005677 8.7e-15 84.7 207 32.9
A05p24650 Brassica napus HOM05D004742 ORTHO05D005677 1.1e-14 84.3 225 31.1
BraA05t21351Z Brassica rapa HOM05D004742 ORTHO05D005677 1.1e-14 84.3 225 31.1
Carub.0001s3103 Capsella rubella HOM05D004742 ORTHO05D005677 1.1e-14 84.3 235 31.5
A05p10550 Brassica napus HOM05D004742 ORTHO05D005677 1.5e-14 84.0 207 32.9
BraA05t19993Z Brassica rapa HOM05D004742 ORTHO05D005677 1.5e-14 84.0 207 32.9
Peaxi162Scf00045g00023 Petunia axillaris HOM05D004742 ORTHO05D005677 1.9e-14 83.6 152 39.5
AL1G46920 Arabidopsis lyrata HOM05D004742 ORTHO05D005677 7.3e-14 81.6 233 30.5
AT1G32690 Arabidopsis thaliana HOM05D004742 ORTHO05D005677 2.1e-13 80.1 235 31.9
PSO210G7694 Papaver somniferum HOM05D004742 ORTHO05D005677 2.1e-13 80.1 120 43.3
C04p13600 Brassica napus HOM05D004742 ORTHO05D005677 3.6e-13 79.3 205 32.2
Carub.0004s1689 Capsella rubella HOM05D004742 ORTHO05D005677 4.8e-13 79.0 220 31.4
CARHR129360 Cardamine hirsuta HOM05D004742 ORTHO05D005677 4.8e-13 79.0 222 30.6
BcaC05g27832 Brassica carinata HOM05D004742 ORTHO05D005677 6.2e-13 78.6 226 30.5
C05p38300 Brassica napus HOM05D004742 ORTHO05D005677 6.2e-13 78.6 226 30.5
BolC5t32562H Brassica oleracea HOM05D004742 ORTHO05D005677 6.2e-13 78.6 226 30.5
Sp1g28270 Schrenkiella parvula HOM05D004742 ORTHO05D005677 6.2e-13 78.6 236 30.1
BolC4t22951H Brassica oleracea HOM05D004742 ORTHO05D005677 1.1e-12 77.8 204 31.9
ECA233G6051 Erigeron canadensis HOM05D007880 ORTHO05D003386 1.1e-12 77.8 118 39.8
HPP92_020967 Vanilla planifolia HOM05D004742 ORTHO05D005677 7.6e-11 71.6 190 34.7
AL4G31210 Arabidopsis lyrata HOM05D004742 ORTHO05D005677 1.3e-10 70.9 212 30.2
Zm00001eb251250 Zea mays HOM05D004742 ORTHO05D005677 1.1e-09 67.8 41 63.4
MBI04_g46668_MAGBIO Magnolia biondii HOM05D004742 ORTHO05D005677 4.2e-09 65.9 211 29.4
HPP92_014611 Vanilla planifolia HOM05D004742 ORTHO05D005677 7.1e-09 65.1 210 31.0
MBI04_g25303_MAGBIO Magnolia biondii HOM05D004742 ORTHO05D005677 9.3e-09 64.7 206 31.1
AT2G35200 Arabidopsis thaliana HOM05D004742 ORTHO05D005677 2.1e-08 63.5 215 29.8
Lj8P301T9 Lonicera japonica HOM05D004742 ORTHO05D005677 3.5e-08 62.8 148 37.2
Os02g0693000 Oryza sativa ssp. japonica HOM05D004742 ORTHO05D005677 3.9e-07 59.3 37 59.5
CDE06G1944 Ceratophyllum demersum HOM05D003296 ORTHO05D003720 5.1e-07 58.9 114 36.0
CDE11G0293 Ceratophyllum demersum HOM05D004742 ORTHO05D005677 5.1e-07 58.9 93 39.8
ATR0665G540 Amborella trichopoda HOM05D004742 ORTHO05D005677 1.1e-06 57.8 48 52.1
Os04g0591300 Oryza sativa ssp. japonica HOM05D004742 ORTHO05D005677 1.1e-06 57.8 40 57.5


User provided reference genes

Program Settings