Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Migut.E00780 Erythranthe guttata HOM05D005023 ORTHO05D006009 6.8e-173 610.5 301 100.0
MSTRG.1995 Avicennia marina HOM05D005023 ORTHO05D006009 2.0e-95 353.2 301 60.5
SGA_v2.0_scaffold6G03150 Striga asiatica HOM05D005023 ORTHO05D006009 1.4e-85 320.5 299 55.2
SalBow6G4088 Salvia bowleyana HOM05D005023 ORTHO05D006009 2.4e-85 319.7 290 58.3
SalBow6G2872 Salvia bowleyana HOM05D005023 ORTHO05D006009 7.7e-84 314.7 283 58.0
SalBow6G3383 Salvia bowleyana HOM05D005023 ORTHO05D006009 2.9e-83 312.8 280 57.1
SalBow6G3389 Salvia bowleyana HOM05D005023 ORTHO05D006009 2.9e-83 312.8 283 57.6
SalBow6G6227 Salvia bowleyana HOM05D005023 ORTHO05D006009 2.9e-83 312.8 280 57.1
SalBow6G1717 Salvia bowleyana HOM05D005023 ORTHO05D006009 8.5e-83 311.2 283 57.6
SalBow6G3524 Salvia bowleyana HOM05D005023 ORTHO05D006009 8.5e-83 311.2 272 58.5
SalBow6G6031 Salvia bowleyana HOM05D005023 ORTHO05D006009 8.5e-83 311.2 283 57.6
SalBow6G4332 Salvia bowleyana HOM05D005023 ORTHO05D006009 1.5e-82 310.5 266 59.4
SalBow8G0269 Salvia bowleyana HOM05D005023 ORTHO05D006009 4.2e-82 308.9 296 55.7
SalBow6G6255 Salvia bowleyana HOM05D005023 ORTHO05D006009 2.7e-81 306.2 265 59.6
SalBow6G6846 Salvia bowleyana HOM05D005023 ORTHO05D006009 3.0e-80 302.8 265 59.6
Dinv28986 Davidia involucrata HOM05D005023 ORTHO05D006009 6.8e-80 301.6 316 47.8
CSS0008599 Camellia sinensis var. sinensis HOM05D005023 ORTHO05D006009 2.6e-79 299.7 317 49.8
Actinidia25987 Actinidia chinensis HOM05D005023 ORTHO05D006009 9.5e-74 281.2 296 49.7
Lj2A234G45 Lonicera japonica HOM05D005023 ORTHO05D006009 9.5e-74 281.2 337 45.7
Hma1.2p1_2161F.1_g315620 Hydrangea macrophylla HOM05D005023 ORTHO05D006009 2.1e-73 280.0 316 47.2
SalBow6G3781 Salvia bowleyana HOM05D005023 ORTHO05D006009 2.8e-73 279.6 230 63.5
Solyc08g076570.3 Solanum lycopersicum HOM05D005023 ORTHO05D006009 4.0e-72 275.8 303 45.2
Sopen08g025130 Solanum pennellii HOM05D005023 ORTHO05D006009 1.5e-71 273.9 306 46.1
Actinidia09175 Actinidia chinensis HOM05D005023 ORTHO05D006009 1.7e-70 270.4 309 46.6
PGSC0003DMG400014810 Solanum tuberosum HOM05D005023 ORTHO05D006009 1.7e-70 270.4 306 46.1
QL12p004398 Quercus lobata HOM05D005023 ORTHO05D006009 6.3e-70 268.5 260 50.0
CAN.G298.60 Capsicum annuum HOM05D005023 ORTHO05D006009 1.1e-69 267.7 304 46.7
CAN.G298.61 Capsicum annuum HOM05D005023 ORTHO05D006009 1.1e-69 267.7 304 46.7
CAN.G726.32 Capsicum annuum HOM05D005023 ORTHO05D006009 1.1e-69 267.7 304 46.7
Peaxi162Scf00170g00918 Petunia axillaris HOM05D005023 ORTHO05D006009 1.1e-69 267.7 288 48.3
Nitab4.5_0002380g0110 Nicotiana tabacum HOM05D005023 ORTHO05D006009 1.4e-69 267.3 300 45.7
Nitab4.5_0000353g0050 Nicotiana tabacum HOM05D005023 ORTHO05D006009 4.5e-68 262.3 290 48.3
Nitab4.5_0004669g0010 Nicotiana tabacum HOM05D005023 ORTHO05D006009 4.5e-68 262.3 250 50.4
GSVIVG01013101001 Vitis vinifera HOM05D005023 ORTHO05D006009 4.5e-68 262.3 314 43.9
Prupe.5G030700 Prunus persica HOM05D005023 ORTHO05D006009 2.3e-67 260.0 279 47.7
Rhsim07G0130800 Rhododendron simsii HOM05D005023 ORTHO05D006009 1.1e-66 257.7 309 46.0
Aqoxy1G01584 Aquilegia oxysepala HOM05D005023 ORTHO05D006009 1.9e-66 256.9 265 47.9
RcHm_v2.0_Chr7g0211361 Rosa chinensis HOM05D005023 ORTHO05D006009 5.6e-66 255.4 321 44.9
TWI60G0688 Tripterygium wilfordii HOM05D005023 ORTHO05D006009 1.2e-65 254.2 289 45.0
Cfa012488 Carpinus fangiana HOM05D005023 ORTHO05D006009 1.6e-65 253.8 265 49.4
CiPaw.11G096900 Carya illinoinensis HOM05D005023 ORTHO05D006009 8.0e-65 251.5 262 48.1
FvH4_5g22760 Fragaria vesca HOM05D005023 ORTHO05D006009 8.0e-65 251.5 253 49.0
FAN18G3597 Fragaria x ananassa HOM05D005023 ORTHO05D006009 8.0e-65 251.5 253 49.0
Atru.chr12.846 Acer truncatum HOM05D005023 ORTHO05D006009 1.4e-64 250.8 262 50.4
Cpa.g.sc90.15 Carica papaya HOM05D005023 ORTHO05D006009 3.0e-64 249.6 266 46.6
Cc08_g03230 Coffea canephora HOM05D005023 ORTHO05D006009 3.0e-64 249.6 303 44.2
Duzib084G0965 Durio zibethinus HOM05D005023 ORTHO05D006009 3.0e-64 249.6 270 47.0
Nitab4.5_0004839g0010 Nicotiana tabacum HOM05D005023 ORTHO05D006009 3.0e-64 249.6 290 45.9
FAN18G4268 Fragaria x ananassa HOM05D005023 ORTHO05D006009 4.0e-64 249.2 253 48.6
DCAR_031128 Daucus carota HOM05D005023 ORTHO05D006009 8.9e-64 248.1 255 49.0
Ciclev10016033m.g Citrus clementina HOM05D005023 ORTHO05D006009 1.5e-63 247.3 262 48.5
Potri.003G095200 Populus trichocarpa HOM05D005023 ORTHO05D006009 1.5e-63 247.3 303 44.2
COL.COLO4_16967 Corchorus olitorius HOM05D005023 ORTHO05D006009 2.0e-63 246.9 269 46.8
Lsat_1_v5_gn_6_80180 Lactuca sativa HOM05D005023 ORTHO05D006009 2.0e-63 246.9 292 41.1
MD06G1038100 Malus domestica HOM05D005023 ORTHO05D006009 2.0e-63 246.9 312 42.9
FAN08G0704 Fragaria x ananassa HOM05D005023 ORTHO05D006009 4.4e-63 245.7 253 48.2
FAN13G2198 Fragaria x ananassa HOM05D005023 ORTHO05D006009 7.5e-63 245.0 253 47.4
FAN13G2978 Fragaria x ananassa HOM05D005023 ORTHO05D006009 7.5e-63 245.0 253 47.4
Thecc.03G307500 Theobroma cacao HOM05D005023 ORTHO05D006009 9.8e-63 244.6 269 48.7
ECA240G3323 Erigeron canadensis HOM05D005023 ORTHO05D006009 3.7e-62 242.7 302 41.7
vmacro00304 Vaccinium macrocarpon HOM05D005023 ORTHO05D006009 1.1e-61 241.1 253 50.2
HanXRQChr03g0083581 Helianthus annuus HOM05D005023 ORTHO05D006009 5.4e-61 238.8 262 45.4
Manes.02G223400 Manihot esculenta HOM05D005023 ORTHO05D006009 1.6e-60 237.3 262 46.6
PSO302G0152 Papaver somniferum HOM05D005023 ORTHO05D006009 4.6e-60 235.7 292 44.2
PSO170G6706 Papaver somniferum HOM05D005023 ORTHO05D006009 1.0e-59 234.6 288 44.1
PSO782G3892 Papaver somniferum HOM05D005023 ORTHO05D006009 1.1e-58 231.1 294 42.9
Sabra01G0107600 Salix brachista HOM05D005023 ORTHO05D006009 1.1e-58 231.1 280 45.0
Hund11209 Selenicereus undatus HOM05D005023 ORTHO05D006009 1.9e-58 230.3 266 44.4
PGR042G2438 Punica granatum HOM05D005023 ORTHO05D006009 4.3e-58 229.2 293 43.0
CANSAT54G0648 Cannabis sativa HOM05D005023 ORTHO05D006009 1.4e-56 224.2 271 42.8
Phvul.009G009200 Phaseolus vulgaris HOM05D005023 ORTHO05D006009 1.8e-56 223.8 257 47.1
Gohir.A12G206900 Gossypium hirsutum HOM05D005023 ORTHO05D006009 4.0e-56 222.6 279 43.7
Haze_08177 Corylus avellana HOM05D005023 ORTHO05D006009 5.2e-56 222.2 190 54.2
EL10Ac8g19220 Beta vulgaris HOM05D005023 ORTHO05D006009 8.9e-56 221.5 265 42.6
Gorai.008G224900 Gossypium raimondii HOM05D005023 ORTHO05D006009 1.5e-55 220.7 279 43.4
Gohir.D12G209350 Gossypium hirsutum HOM05D005023 ORTHO05D006009 2.6e-55 219.9 279 43.4
Lj6g0028231 Lotus japonicus HOM05D005023 ORTHO05D006009 4.9e-54 215.7 263 43.3
SalBow6G0983 Salvia bowleyana HOM05D005023 ORTHO05D006009 4.9e-54 215.7 276 47.5
SalBow6G0969 Salvia bowleyana HOM05D005023 ORTHO05D006009 3.2e-53 213.0 203 55.7
Ca_22661_v3 Cicer arietinum L. HOM05D005023 ORTHO05D006009 4.1e-53 212.6 265 42.6
Lalb_Chr25g0286701 Lupinus albus HOM05D005023 ORTHO05D006009 7.0e-53 211.8 255 43.5
MBI02_g28332_MAGBIO Magnolia biondii HOM05D005023 ORTHO05D006009 1.2e-52 211.1 266 43.6
Glyma.04G013700 Glycine max HOM05D005023 ORTHO05D006009 1.6e-52 210.7 279 42.3
AL8G11450 Arabidopsis lyrata HOM05D005023 ORTHO05D006009 2.1e-52 210.3 281 44.8
AUR62033976 Chenopodium quinoa HOM05D005023 ORTHO05D006009 3.5e-52 209.5 265 40.4
Sabra03G0064200 Salix brachista HOM05D005023 ORTHO05D006009 3.5e-52 209.5 226 47.3
Medtr8g066330 Medicago truncatula HOM05D005023 ORTHO05D006009 4.6e-52 209.1 268 42.5
THA.LOC104806696 Tarenaya hassleriana HOM05D005023 ORTHO05D006009 7.8e-52 208.4 259 45.9
FAN04G1126 Fragaria x ananassa HOM05D005023 ORTHO05D006009 1.0e-51 208.0 202 50.0
SalBow6G5471 Salvia bowleyana HOM05D005023 ORTHO05D006009 1.3e-51 207.6 185 58.9
Psat4g122280 Pisum sativum HOM05D005023 ORTHO05D006009 3.0e-51 206.5 263 41.8
Aa31sc182G50 Aethionema arabicum HOM05D005023 ORTHO05D006009 3.9e-51 206.1 252 47.2
TPR.G14159 Trifolium pratense HOM05D005023 ORTHO05D006009 3.9e-51 206.1 265 42.3
Glyma.06G013600 Glycine max HOM05D005023 ORTHO05D006009 6.6e-51 205.3 250 43.6
Eucgr.E00250 Eucalyptus grandis HOM05D005023 ORTHO05D006009 8.6e-51 204.9 265 41.1
SalBow6G1311 Salvia bowleyana HOM05D005023 ORTHO05D006009 1.1e-50 204.5 185 58.4
arahy.Tifrunner.gnm1.ann1.J93PEP Arachis hypogaea HOM05D005023 ORTHO05D006009 4.3e-50 202.6 264 41.7
CARHR174600 Cardamine hirsuta HOM05D005023 ORTHO05D006009 4.3e-50 202.6 270 46.3
Nn7g38116 Nelumbo nucifera HOM05D005023 ORTHO05D006009 4.3e-50 202.6 253 39.9
AT5G46850 Arabidopsis thaliana HOM05D005023 ORTHO05D006009 5.6e-50 202.2 266 43.2
arahy.Tifrunner.gnm1.ann1.NK2KWA Arachis hypogaea HOM05D005023 ORTHO05D006009 7.3e-50 201.8 264 41.3
Carub.0008s0106 Capsella rubella HOM05D005023 ORTHO05D006009 7.3e-50 201.8 281 44.1
arahy.Tifrunner.gnm1.ann1.6CH5L4 Arachis hypogaea HOM05D005023 ORTHO05D006009 9.5e-50 201.4 264 41.3
Thhalv10000976m.g Eutrema salsugineum HOM05D005023 ORTHO05D006009 1.1e-48 198.0 267 44.2
Ah.12g065340 Amaranthus hybridus HOM05D005023 ORTHO05D006009 1.8e-48 197.2 250 40.0
Sed0002054 Sechium edule HOM05D005023 ORTHO05D006009 1.8e-48 197.2 293 36.2
Sp2g11650 Schrenkiella parvula HOM05D005023 ORTHO05D006009 3.1e-48 196.4 254 44.9
Hma1.2p1_1594F.1_g292650 Hydrangea macrophylla HOM05D005023 ORTHO05D006009 4.0e-48 196.1 223 47.5
SalBow6G6268 Salvia bowleyana HOM05D005023 ORTHO05D006009 5.2e-48 195.7 161 63.4
unitig_21.g20893 Utricularia gibba HOM05D005023 ORTHO05D004745 2.6e-47 193.4 234 41.9
ClCG04G001320 Citrullus lanatus HOM05D005023 ORTHO05D006009 3.4e-47 193.0 246 42.3
A06p45570 Brassica napus HOM05D005023 ORTHO05D006009 4.9e-46 189.1 263 42.6
BraA06t27429Z Brassica rapa HOM05D005023 ORTHO05D006009 4.9e-46 189.1 263 42.6
Hma1.2p1_2161F.1_g315630 Hydrangea macrophylla HOM05D005023 ORTHO05D006009 4.9e-46 189.1 203 49.8
BcaC06g31439 Brassica carinata HOM05D005023 ORTHO05D006009 6.4e-46 188.7 264 43.2
PSO063G5178 Papaver somniferum HOM05D005023 ORTHO05D006009 4.1e-45 186.0 188 51.6
Psat4g122680 Pisum sativum HOM05D005023 ORTHO05D006009 4.1e-45 186.0 223 42.6
BolC7t43557H Brassica oleracea HOM05D005023 ORTHO05D006009 2.7e-44 183.3 268 42.9
BcaC06g34337 Brassica carinata HOM05D005023 ORTHO05D006009 6.0e-44 182.2 268 42.5
C07p30210 Brassica napus HOM05D005023 ORTHO05D006009 6.0e-44 182.2 268 42.5
SalBow6G0951 Salvia bowleyana HOM05D005023 ORTHO05D006009 7.8e-44 181.8 135 67.4
CsaV3_1G033210 Cucumis sativus L. HOM05D000021 ORTHO05D000010 1.0e-43 181.4 248 37.9
SHI20240 Sapria himalayana HOM05D000452 ORTHO05D000647 1.3e-38 164.5 256 36.7
Sc01g0007280 Simmondsia chinensis HOM05D005023 ORTHO05D006009 8.4e-38 161.8 262 36.3
arahy.Tifrunner.gnm1.ann1.GAHP45 Arachis hypogaea HOM05D005023 ORTHO05D006009 1.4e-37 161.0 263 36.9
ATR0580G166 Amborella trichopoda HOM05D005237 ORTHO05D006189 2.4e-37 160.2 177 45.8
Os12g0596900 Oryza sativa ssp. japonica HOM05D005023 ORTHO05D006009 5.4e-37 159.1 262 39.7
Zm00001eb030880 Zea mays HOM05D005023 ORTHO05D006009 7.1e-37 158.7 261 41.0
HPP92_014897 Vanilla planifolia HOM05D005023 ORTHO05D006009 1.2e-36 157.9 243 39.9
HPP92_014902 Vanilla planifolia HOM05D005023 ORTHO05D006009 1.7e-35 154.1 243 40.3
TPR.G3350 Trifolium pratense HOM05D005023 ORTHO05D006009 3.0e-35 153.3 189 43.9
Solyc08g076550.3 Solanum lycopersicum HOM05D005023 ORTHO05D006009 3.3e-34 149.8 140 49.3
CDE02G4581 Ceratophyllum demersum HOM05D005023 ORTHO05D006009 1.6e-33 147.5 255 37.3
Actinidia09177 Actinidia chinensis HOM05D005023 ORTHO05D006009 1.4e-32 144.4 255 32.9
MELO3C033076.2 Cucumis melo HOM05D005023 ORTHO05D006009 2.1e-28 130.6 240 33.8
Hma1.2p1_0572F.1_g181170 Hydrangea macrophylla HOM05D005023 ORTHO05D006009 3.5e-28 129.8 126 53.2
Mapoly0088s0063 Marchantia polymorpha HOM05D005023 ORTHO05D006009 3.1e-24 116.7 206 32.0
SalBow6G7173 Salvia bowleyana HOM05D005023 ORTHO05D006009 5.8e-23 112.5 88 63.6
SalBow6G0459 Salvia bowleyana HOM05D005023 ORTHO05D006009 1.6e-20 104.4 79 63.3
Pp3c13_7870 Physcomitrium patens HOM05D005023 ORTHO05D006009 2.3e-19 100.5 210 31.4
TAR375G0008 Trochodendron aralioides HOM05D005023 ORTHO05D006009 3.7e-17 93.2 167 35.3
SMO358G0075 Selaginella moellendorffii HOM05D005023 ORTHO05D006009 6.2e-17 92.4 219 32.0
CSS0036970 Camellia sinensis var. sinensis HOM05D005023 ORTHO05D006009 1.4e-13 81.3 89 43.8
MELO3C011047.2 Cucumis melo HOM05D005023 ORTHO05D006009 1.9e-13 80.9 99 39.4
AagrBONN_evm.TU.Sc2ySwM_344.1294 Anthoceros agrestis HOM05D005023 ORTHO05D006009 5.1e-11 72.8 160 33.1
SEGI_33873 Sequoiadendron giganteum HOM05D005023 ORTHO05D006009 1.4e-08 64.7 158 31.0
SalBow6G3463 Salvia bowleyana HOM05D005023 ORTHO05D006009 4.9e-06 56.2 57 45.6


User provided reference genes

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