Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Migut.E00705 Erythranthe guttata HOM05D004959 ORTHO05D005961 0.0e+00 2261.9 1148 100.0
Migut.E00612 Erythranthe guttata HOM05D004959 ORTHO05D005961 0.0e+00 2125.5 1148 94.4
SGA_v2.0_scaffold36G14263 Striga asiatica HOM05D004959 ORTHO05D005961 0.0e+00 1207.6 1148 58.4
SGA_v2.0_scaffold99G29470 Striga asiatica HOM05D004959 ORTHO05D005961 0.0e+00 1176.0 1130 58.3
Oeu021359.1 Olea europaea HOM05D004959 ORTHO05D005961 0.0e+00 1101.3 1167 52.8
Dinv06304 Davidia involucrata HOM05D004959 ORTHO05D005961 2.7e-278 962.6 1165 47.4
Dinv04263 Davidia involucrata HOM05D004959 ORTHO05D005961 1.5e-276 956.8 1163 47.4
PGSC0003DMG400003329 Solanum tuberosum HOM05D004959 ORTHO05D005961 1.1e-250 870.9 1161 43.3
Cc04_g10880 Coffea canephora HOM05D004959 ORTHO05D005961 9.0e-250 867.8 1159 43.9
Solyc02g064590.2 Solanum lycopersicum HOM05D004959 ORTHO05D005961 4.5e-249 865.5 1167 43.8
Solyc02g064620.2 Solanum lycopersicum HOM05D004959 ORTHO05D005961 4.5e-249 865.5 1167 43.8
Sopen02g014720 Solanum pennellii HOM05D004959 ORTHO05D005961 4.5e-249 865.5 1167 43.6
Nitab4.5_0000036g0080 Nicotiana tabacum HOM05D004959 ORTHO05D005961 7.4e-244 848.2 1167 43.4
Nitab4.5_0010326g0010 Nicotiana tabacum HOM05D004959 ORTHO05D005961 7.7e-241 838.2 1145 43.2
Hma1.2p1_0137F.1_g062550 Hydrangea macrophylla HOM05D004959 ORTHO05D005961 2.4e-234 816.6 1169 42.8
Lj3A850G96 Lonicera japonica HOM05D004959 ORTHO05D005961 1.7e-232 810.4 1189 43.5
QL04p014466 Quercus lobata HOM05D004959 ORTHO05D005961 6.5e-232 808.5 1173 41.3
QL04p014830 Quercus lobata HOM05D004959 ORTHO05D005961 1.1e-231 807.7 1173 41.3
GSVIVG01032944001 Vitis vinifera HOM05D004959 ORTHO05D005961 1.4e-231 807.4 1172 41.8
Cfa000659 Carpinus fangiana HOM05D004959 ORTHO05D005961 6.1e-230 802.0 1164 42.2
Rhsim02G0134800 Rhododendron simsii HOM05D004959 ORTHO05D005961 6.1e-230 802.0 1155 42.2
Rhsim01G0101500 Rhododendron simsii HOM05D004959 ORTHO05D005961 3.1e-226 789.6 1174 41.7
Actinidia07601 Actinidia chinensis HOM05D004959 ORTHO05D005961 1.7e-224 783.9 1165 42.2
vmacro15931 Vaccinium macrocarpon HOM05D004959 ORTHO05D005961 2.1e-222 776.9 1193 40.3
Prupe.3G104300 Prunus persica HOM05D004959 ORTHO05D005961 8.5e-216 755.0 1162 40.3
Cpa.g.sc30.122 Carica papaya HOM05D004959 ORTHO05D005961 3.6e-214 749.6 1166 40.0
Thecc.02G004800 Theobroma cacao HOM05D004959 ORTHO05D005961 1.2e-212 744.6 1174 39.3
Sabra18G0102400 Salix brachista HOM05D004959 ORTHO05D005961 2.0e-212 743.8 1180 39.1
TWI63G1138 Tripterygium wilfordii HOM05D004959 ORTHO05D005961 3.4e-212 743.0 1174 40.3
Potri.018G118800 Populus trichocarpa HOM05D004959 ORTHO05D005961 6.3e-211 738.8 1178 39.0
MD13G1224700 Malus domestica HOM05D004959 ORTHO05D005961 2.7e-201 706.8 1150 39.5
Manes.16G050600 Manihot esculenta HOM05D004959 ORTHO05D005961 1.5e-199 701.0 1179 37.7
DCAR_026905 Daucus carota HOM05D004959 ORTHO05D005961 2.8e-198 696.8 1162 38.0
HanXRQChr12g0366411 Helianthus annuus HOM05D004959 ORTHO05D005961 3.7e-195 686.4 1170 38.6
Eucgr.I01567 Eucalyptus grandis HOM05D004959 ORTHO05D005961 3.3e-191 673.3 1168 37.5
COL.COLO4_18025 Corchorus olitorius HOM05D004959 ORTHO05D005961 4.3e-191 672.9 1173 36.9
CANSAT25G2352 Cannabis sativa HOM05D004959 ORTHO05D005961 1.8e-189 667.5 1160 37.8
ECA233G2209 Erigeron canadensis HOM05D004959 ORTHO05D005961 2.3e-189 667.2 1169 38.2
Gohir.D12G047700 Gossypium hirsutum HOM05D004959 ORTHO05D005961 2.6e-188 663.7 1176 37.0
Aqoxy3G03508 Aquilegia oxysepala HOM05D004959 ORTHO05D005961 5.8e-188 662.5 1169 38.1
FvH4_4g05080 Fragaria vesca HOM05D004959 ORTHO05D005961 1.1e-186 658.3 1158 37.3
PGR142G3977 Punica granatum HOM05D004959 ORTHO05D005961 2.4e-186 657.1 1169 36.6
Gohir.A12G049000 Gossypium hirsutum HOM05D004959 ORTHO05D005961 5.4e-186 656.0 1210 36.6
Aqoxy5G03195 Aquilegia oxysepala HOM05D004959 ORTHO05D005961 9.2e-186 655.2 1165 37.2
Gorai.008G050400 Gossypium raimondii HOM05D004959 ORTHO05D005961 6.0e-185 652.5 1209 36.3
PSO478G1937 Papaver somniferum HOM05D004959 ORTHO05D005961 1.3e-184 651.4 1160 37.6
Nn3g21093 Nelumbo nucifera HOM05D004959 ORTHO05D005961 3.0e-184 650.2 1162 36.7
ClCG09G011850 Citrullus lanatus HOM05D004959 ORTHO05D005961 5.0e-184 649.4 1172 35.8
PSO017G0156 Papaver somniferum HOM05D004959 ORTHO05D005961 8.6e-184 648.7 1182 38.3
FAN12G3376 Fragaria x ananassa HOM05D004959 ORTHO05D005961 3.3e-183 646.7 1164 37.2
Sed0018634 Sechium edule HOM05D004959 ORTHO05D005961 3.6e-182 643.3 1167 35.8
RcHm_v2.0_Chr4g0396011 Rosa chinensis HOM05D004959 ORTHO05D005961 1.2e-180 638.3 1158 36.9
CsaV3_5G015760 Cucumis sativus L. HOM05D004959 ORTHO05D005961 1.4e-178 631.3 1173 35.6
FAN22G0965 Fragaria x ananassa HOM05D004959 ORTHO05D005961 1.2e-177 628.2 1168 36.9
MELO3C026444.2 Cucumis melo HOM05D004959 ORTHO05D005961 3.5e-177 626.7 1173 35.9
Sc10g0002790 Simmondsia chinensis HOM05D004959 ORTHO05D005961 1.1e-175 621.7 1162 37.5
Lsat_1_v5_gn_8_33541 Lactuca sativa HOM05D004959 ORTHO05D005961 2.0e-172 610.9 1154 37.3
EL10Ac2g04300 Beta vulgaris HOM05D004959 ORTHO05D005961 4.4e-172 609.8 1159 35.9
CiPaw.10G061900 Carya illinoinensis HOM05D004959 ORTHO05D005961 2.9e-171 607.1 986 39.5
VMungo0464G0163 Vigna mungo HOM05D004959 ORTHO05D005961 4.9e-171 606.3 1170 35.2
FAN17G1136 Fragaria x ananassa HOM05D004959 ORTHO05D005961 5.4e-170 602.8 1157 35.9
Haze_06165 Corylus avellana HOM05D004959 ORTHO05D005961 6.0e-169 599.4 1105 36.7
Phvul.004G026300 Phaseolus vulgaris HOM05D004959 ORTHO05D005961 3.0e-168 597.0 1175 35.0
TAR622G1187 Trochodendron aralioides HOM05D004959 ORTHO05D005961 3.0e-168 597.0 998 38.0
HanXRQChr04g0121291 Helianthus annuus HOM05D004959 ORTHO05D005961 6.6e-168 595.9 1128 37.3
Duzib248G0683 Durio zibethinus HOM05D004959 ORTHO05D005961 8.6e-168 595.5 1098 36.8
AUR62012329 Chenopodium quinoa HOM05D004959 ORTHO05D005961 1.6e-166 591.3 1163 35.2
MBI07_g42017_MAGBIO Magnolia biondii HOM05D004959 ORTHO05D005961 8.1e-166 589.0 1266 33.7
Glyma.19G032700 Glycine max HOM05D004959 ORTHO05D005961 1.5e-164 584.7 1161 34.1
AL7G33790 Arabidopsis lyrata HOM05D004959 ORTHO05D005961 5.8e-164 582.8 1175 34.0
AT4G20060 Arabidopsis thaliana HOM05D004959 ORTHO05D005961 1.1e-162 578.6 1169 34.1
CARHR226870 Cardamine hirsuta HOM05D004959 ORTHO05D005961 7.8e-161 572.4 1174 34.2
AUR62022971 Chenopodium quinoa HOM05D004959 ORTHO05D005961 1.7e-160 571.2 1152 34.5
Thhalv10024260m.g Eutrema salsugineum HOM05D004959 ORTHO05D005961 5.3e-157 559.7 1168 33.3
BolC1t01373H Brassica oleracea HOM05D004959 ORTHO05D005961 1.5e-156 558.1 1161 34.3
BraA01t01128Z Brassica rapa HOM05D004959 ORTHO05D005961 7.6e-156 555.8 1172 33.6
C01p14060 Brassica napus HOM05D004959 ORTHO05D005961 3.8e-155 553.5 1164 33.5
Carub.0007s2107 Capsella rubella HOM05D004959 ORTHO05D005961 6.4e-155 552.7 1168 33.0
Sp7g18520 Schrenkiella parvula HOM05D004959 ORTHO05D005961 1.6e-153 548.1 1161 33.1
BcaNung06192 Brassica carinata HOM05D004959 ORTHO05D005961 6.6e-152 542.7 1175 33.6
MD16G1229900 Malus domestica HOM05D004959 ORTHO05D005961 1.3e-150 538.5 1029 35.5
Aa31LG6G2470 Aethionema arabicum HOM05D004959 ORTHO05D005961 2.6e-148 530.8 1162 32.4
ATR0037G053 Amborella trichopoda HOM05D004959 ORTHO05D005961 4.5e-148 530.0 1215 33.0
CSS0032692 Camellia sinensis var. sinensis HOM05D004959 ORTHO05D005961 2.9e-147 527.3 913 38.1
Atru.chr8.666 Acer truncatum HOM05D004959 ORTHO05D005961 6.4e-147 526.2 940 37.9
Peaxi162Scf00449g00320 Petunia axillaris HOM05D004959 ORTHO05D005961 1.4e-146 525.0 892 37.8
Ah.09g226960 Amaranthus hybridus HOM05D004959 ORTHO05D005961 3.9e-144 516.9 1184 33.2
A01p11860 Brassica napus HOM05D004959 ORTHO05D005961 3.9e-144 516.9 1172 32.3
HPP92_024644 Vanilla planifolia HOM05D004959 ORTHO05D005961 1.5e-140 505.0 1210 30.9
Aqoxy7G01840 Aquilegia oxysepala HOM05D004959 ORTHO05D005961 1.9e-138 498.0 977 36.4
Ciclev10014195m.g Citrus clementina HOM05D004959 ORTHO05D005961 1.8e-128 464.9 911 34.7
Hma1.2p1_0286F.1_g114200 Hydrangea macrophylla HOM05D004959 ORTHO05D005961 3.9e-128 463.8 668 41.9
unitig_46.g18488 Utricularia gibba HOM05D004959 ORTHO05D005961 1.1e-119 435.6 1161 29.7
CAN.G370.71 Capsicum annuum HOM05D004959 ORTHO05D005961 3.1e-117 427.6 445 51.0
Glyma.13G054500 Glycine max HOM05D004959 ORTHO05D005961 3.6e-113 414.1 970 32.6
Oeu021362.1 Olea europaea HOM05D004959 ORTHO05D005961 5.1e-112 410.2 439 51.3
Zm00001eb126950 Zea mays HOM05D004959 ORTHO05D005961 1.3e-110 405.6 1236 26.9
SEGI_31831 Sequoiadendron giganteum HOM05D004959 ORTHO05D005961 2.8e-110 404.4 1266 27.4
Peaxi162Scf00449g00321 Petunia axillaris HOM05D004959 ORTHO05D005961 1.2e-81 309.3 274 57.7
PSO161G0046 Papaver somniferum HOM05D004959 ORTHO05D005961 1.6e-81 308.9 817 32.3
Pp3c21_2460 Physcomitrium patens HOM05D004959 ORTHO05D005961 4.6e-76 290.8 1269 25.1
Lalb_Chr19g0135221 Lupinus albus HOM05D004959 ORTHO05D005961 1.9e-74 285.4 308 48.1
SHI28141 Sapria himalayana HOM05D004959 ORTHO05D005961 1.2e-73 282.7 899 29.6
Ca_18944_v3 Cicer arietinum L. HOM05D004959 ORTHO05D005961 5.4e-69 267.3 299 47.8
LjContig00564g0002415 Lotus japonicus HOM05D004959 ORTHO05D005961 4.6e-68 264.2 302 47.7
LjContig00564g0005645 Lotus japonicus HOM05D004959 ORTHO05D005961 4.6e-68 264.2 302 47.7
Medtr4g078330 Medicago truncatula HOM05D004959 ORTHO05D005961 7.8e-68 263.5 299 47.2
Psat7g167160 Pisum sativum HOM05D004959 ORTHO05D005961 9.5e-66 256.5 299 46.8
Mapoly0306s0002 Marchantia polymorpha HOM05D004959 ORTHO05D005961 1.1e-64 253.1 1279 23.1
arahy.Tifrunner.gnm1.ann1.WXF40H Arachis hypogaea HOM05D004959 ORTHO05D005961 4.3e-58 231.1 307 42.0
Lj3g0004583 Lotus japonicus HOM05D004959 ORTHO05D005961 5.6e-58 230.7 302 42.7
arahy.Tifrunner.gnm1.ann1.C6XSUD Arachis hypogaea HOM05D004959 ORTHO05D005961 2.8e-57 228.4 307 41.4
CSS0018526 Camellia sinensis var. sinensis HOM05D004959 ORTHO05D005961 4.4e-55 221.1 235 50.6
BcaB03g11657 Brassica carinata HOM05D004959 ORTHO05D005961 3.2e-53 214.9 370 36.2
CDE04G1301 Ceratophyllum demersum HOM05D004959 ORTHO05D005961 8.1e-49 200.3 425 32.7
CDE04G0396 Ceratophyllum demersum HOM05D004959 ORTHO05D005961 1.8e-48 199.1 223 46.2
Atru.chr8.667 Acer truncatum HOM05D004959 ORTHO05D005961 1.9e-45 189.1 175 54.3
AagrBONN_evm.TU.Sc2ySwM_228.5373 Anthoceros agrestis HOM05D004959 ORTHO05D005961 3.5e-44 184.9 1141 24.1
LjContig00564g0005363 Lotus japonicus HOM05D004959 ORTHO05D005961 4.3e-42 177.9 177 52.0
PSO478G4754 Papaver somniferum HOM05D004959 ORTHO05D005961 1.3e-41 176.4 190 48.9
SHI28139 Sapria himalayana HOM05D004959 ORTHO05D005961 5.3e-40 171.0 175 50.9
SMO111G0127 Selaginella moellendorffii HOM05D004959 ORTHO05D005961 9.9e-39 166.8 830 24.0
BcaNung06193 Brassica carinata HOM05D004959 ORTHO05D005961 4.2e-37 161.4 181 46.4
Phvul.005G124450 Phaseolus vulgaris HOM05D004959 ORTHO05D005961 7.1e-37 160.6 170 48.8
TPR.G23000 Trifolium pratense HOM05D004959 ORTHO05D005961 1.5e-34 152.9 167 48.5
Aqoxy5G03191 Aquilegia oxysepala HOM05D004959 ORTHO05D005961 5.6e-26 124.4 451 28.2
Psat2g088000 Pisum sativum HOM05D004959 ORTHO05D005961 1.8e-24 119.4 127 51.2
CBR_g16049 Chara braunii HOM05D004959 ORTHO05D005961 5.3e-24 117.9 366 26.2
Os01g0188200 Oryza sativa ssp. japonica HOM05D004959 ORTHO05D005961 2.6e-23 115.5 235 30.6
Phvul.005G124551 Phaseolus vulgaris HOM05D004959 ORTHO05D005961 1.0e-22 113.6 272 32.7
CDE04G2317 Ceratophyllum demersum HOM05D004959 ORTHO05D005961 3.8e-22 111.7 441 27.7
Phvul.005G124501 Phaseolus vulgaris HOM05D004959 ORTHO05D005961 3.0e-19 102.1 326 28.2
Atru.chr10.384 Acer truncatum HOM05D004959 ORTHO05D005961 1.1e-16 93.6 213 31.5
Ca_14573_v3 Cicer arietinum L. HOM05D004959 ORTHO05D005961 2.9e-14 85.5 100 45.0
TPR.G940 Trifolium pratense HOM05D004959 ORTHO05D005961 1.4e-13 83.2 101 44.6
Ca_14572_v3 Cicer arietinum L. HOM05D004959 ORTHO05D005961 1.2e-12 80.1 105 42.9
Aqoxy5G03189 Aquilegia oxysepala HOM05D004959 ORTHO05D005961 3.6e-12 78.6 228 29.8
Dinv16431 Davidia involucrata HOM05D004959 ORTHO05D005961 1.9e-10 72.8 107 43.0
SHI28140 Sapria himalayana HOM05D004959 ORTHO05D005961 3.4e-07 62.0 74 48.6
BolC3t20554H Brassica oleracea HOM05D004959 ORTHO05D005961 4.5e-07 61.6 49 61.2
Ca_14567_v3 Cicer arietinum L. HOM05D004959 ORTHO05D005961 4.5e-07 61.6 86 39.5
Os01g0103700 Oryza sativa ssp. japonica HOM05D004959 ORTHO05D005961 1.3e-06 60.1 138 30.4
C03p82730 Brassica napus HOM05D004959 ORTHO05D005961 2.9e-06 58.9 45 62.2
C03p82750 Brassica napus HOM05D000005 ORTHO05D000449 3.8e-06 58.5 79 39.2
BolC3t20557H Brassica oleracea HOM05D000005 ORTHO05D000449 5.0e-06 58.2 78 39.7


User provided reference genes

Program Settings