Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Migut.E00685 Erythranthe guttata HOM05D004221 ORTHO05D004998 1.0e-73 280.0 149 100.0
MSTRG.13679 Avicennia marina HOM05D004221 ORTHO05D004998 1.9e-67 259.2 149 91.3
PGSC0003DMG400016397 Solanum tuberosum HOM05D004221 ORTHO05D004998 7.0e-62 240.7 147 83.7
Actinidia04331 Actinidia chinensis HOM05D004221 ORTHO05D004998 5.9e-61 237.7 140 85.0
CAN.G282.46 Capsicum annuum HOM05D004221 ORTHO05D004998 7.8e-61 237.3 146 82.2
Solyc01g008270.3 Solanum lycopersicum HOM05D004221 ORTHO05D004998 2.3e-60 235.7 147 81.6
Sopen01g003790 Solanum pennellii HOM05D004221 ORTHO05D004998 2.3e-60 235.7 147 81.6
Nn3g18605 Nelumbo nucifera HOM05D004221 ORTHO05D004998 5.0e-60 234.6 139 84.2
Nitab4.5_0013217g0020 Nicotiana tabacum HOM05D004221 ORTHO05D004998 5.0e-60 234.6 140 84.3
PGR044G1895 Punica granatum HOM05D004221 ORTHO05D004998 6.6e-60 234.2 142 83.1
ECA232G2799 Erigeron canadensis HOM05D004221 ORTHO05D004998 1.9e-59 232.6 142 84.5
Hma1.2p1_0513F.1_g169420 Hydrangea macrophylla HOM05D004221 ORTHO05D004998 1.9e-59 232.6 138 84.8
COL.COLO4_33086 Corchorus olitorius HOM05D004221 ORTHO05D004998 5.6e-59 231.1 142 79.6
Actinidia04067 Actinidia chinensis HOM05D004221 ORTHO05D004998 7.3e-59 230.7 138 84.8
SGA_v2.0_scaffold256G45657 Striga asiatica HOM05D004221 ORTHO05D004998 7.3e-59 230.7 187 69.5
Eucgr.J00883 Eucalyptus grandis HOM05D004221 ORTHO05D004998 1.2e-58 229.9 143 81.1
Hund24383 Selenicereus undatus HOM05D004221 ORTHO05D004998 1.2e-58 229.9 138 85.5
Potri.005G090100 Populus trichocarpa HOM05D004221 ORTHO05D004998 1.6e-58 229.6 149 76.5
AUR62032953 Chenopodium quinoa HOM05D004221 ORTHO05D004998 2.1e-58 229.2 142 82.4
Sed0003164 Sechium edule HOM05D004221 ORTHO05D004998 2.1e-58 229.2 138 82.6
Thecc.02G156600 Theobroma cacao HOM05D004221 ORTHO05D004998 2.1e-58 229.2 142 78.2
Ciclev10032992m.g Citrus clementina HOM05D004221 ORTHO05D004998 2.8e-58 228.8 147 79.6
Lsat_1_v5_gn_4_64581 Lactuca sativa HOM05D004221 ORTHO05D004998 3.6e-58 228.4 142 83.1
Prupe.1G348800 Prunus persica HOM05D004221 ORTHO05D004998 3.6e-58 228.4 147 79.6
THA.LOC104800677 Tarenaya hassleriana HOM05D004221 ORTHO05D004998 4.7e-58 228.0 144 78.5
Cfa008767 Carpinus fangiana HOM05D004221 ORTHO05D004998 6.1e-58 227.6 141 80.1
CANSAT78G1084 Cannabis sativa HOM05D004221 ORTHO05D004998 8.0e-58 227.3 139 83.5
CiPaw.06G062100 Carya illinoinensis HOM05D004221 ORTHO05D004998 8.0e-58 227.3 140 80.0
Manes.11G108400 Manihot esculenta HOM05D004221 ORTHO05D004998 8.0e-58 227.3 140 80.0
Os10g0488100 Oryza sativa ssp. japonica HOM05D004221 ORTHO05D004998 8.0e-58 227.3 147 78.2
PSO017G5121 Papaver somniferum HOM05D004221 ORTHO05D004998 1.0e-57 226.9 138 83.3
CARHR190250 Cardamine hirsuta HOM05D004221 ORTHO05D004998 1.4e-57 226.5 146 76.7
THA.LOC104818379 Tarenaya hassleriana HOM05D004221 ORTHO05D004998 1.8e-57 226.1 144 79.2
PSO170G6579 Papaver somniferum HOM05D004221 ORTHO05D004998 2.3e-57 225.7 138 83.3
HanXRQChr04g0111871 Helianthus annuus HOM05D004221 ORTHO05D004998 4.0e-57 224.9 138 83.3
FvH4_4g37090 Fragaria vesca HOM05D004221 ORTHO05D004998 6.8e-57 224.2 147 78.2
Gohir.A01G012400 Gossypium hirsutum HOM05D004221 ORTHO05D004998 6.8e-57 224.2 142 78.2
MD13G1003600 Malus domestica HOM05D004221 ORTHO05D004998 8.9e-57 223.8 145 78.6
Aqoxy3G04291 Aquilegia oxysepala HOM05D004221 ORTHO05D004998 1.2e-56 223.4 139 79.9
TWI77G0364 Tripterygium wilfordii HOM05D004221 ORTHO05D004998 1.2e-56 223.4 141 78.7
Duzib132G0545 Durio zibethinus HOM05D004221 ORTHO05D004998 2.0e-56 222.6 142 77.5
Duzib132G0858 Durio zibethinus HOM05D004221 ORTHO05D004998 2.0e-56 222.6 142 77.5
Gorai.002G015400 Gossypium raimondii HOM05D004221 ORTHO05D004998 2.0e-56 222.6 142 78.2
Gohir.D01G013600 Gossypium hirsutum HOM05D004221 ORTHO05D004998 2.6e-56 222.2 142 77.5
MD16G1003800 Malus domestica HOM05D004221 ORTHO05D004998 3.4e-56 221.9 145 77.9
Potri.007G074042 Populus trichocarpa HOM05D004221 ORTHO05D004998 3.4e-56 221.9 145 73.8
RcHm_v2.0_Chr4g0446851 Rosa chinensis HOM05D004221 ORTHO05D004998 3.4e-56 221.9 146 78.8
GSVIVG01026144001 Vitis vinifera HOM05D004221 ORTHO05D004998 3.4e-56 221.9 136 82.4
Zm00001eb045320 Zea mays HOM05D004221 ORTHO05D004998 3.4e-56 221.9 146 77.4
AUR62017728 Chenopodium quinoa HOM05D004221 ORTHO05D004998 4.4e-56 221.5 142 81.7
Carub.0006s2106 Capsella rubella HOM05D004221 ORTHO05D004998 5.7e-56 221.1 146 75.3
CsaV3_5G020730 Cucumis sativus L. HOM05D004221 ORTHO05D004998 5.7e-56 221.1 141 76.6
AT5G23290 Arabidopsis thaliana HOM05D004221 ORTHO05D004998 7.5e-56 220.7 146 75.3
Lalb_Chr06g0163921 Lupinus albus HOM05D004221 ORTHO05D004998 9.8e-56 220.3 141 76.6
Aa31LG11G2750 Aethionema arabicum HOM05D004221 ORTHO05D004998 1.3e-55 219.9 143 75.5
AL6G34550 Arabidopsis lyrata HOM05D004221 ORTHO05D004998 1.3e-55 219.9 146 75.3
FAN17G0592 Fragaria x ananassa HOM05D004221 ORTHO05D004998 1.3e-55 219.9 146 76.7
TAR629G0713 Trochodendron aralioides HOM05D004221 ORTHO05D004998 1.7e-55 219.5 139 79.1
TAR629G3528 Trochodendron aralioides HOM05D004221 ORTHO05D004998 2.2e-55 219.2 139 79.1
EL10Ac9g22978 Beta vulgaris HOM05D004221 ORTHO05D004998 2.9e-55 218.8 142 78.2
FAN07G0046 Fragaria x ananassa HOM05D004221 ORTHO05D004998 3.7e-55 218.4 145 77.9
FAN10G4155 Fragaria x ananassa HOM05D004221 ORTHO05D004998 3.7e-55 218.4 146 75.3
FAN23G3078 Fragaria x ananassa HOM05D004221 ORTHO05D004998 3.7e-55 218.4 146 76.0
HPP92_005060 Vanilla planifolia HOM05D004221 ORTHO05D004998 3.7e-55 218.4 139 76.3
unitig_699.g19553 Utricularia gibba HOM05D004221 ORTHO05D004998 4.9e-55 218.0 144 79.2
FAN03G0273 Fragaria x ananassa HOM05D004221 ORTHO05D004998 6.4e-55 217.6 146 75.3
FAN12G1261 Fragaria x ananassa HOM05D004221 ORTHO05D004998 8.3e-55 217.2 139 79.1
TWI74G0522 Tripterygium wilfordii HOM05D004221 ORTHO05D004998 1.1e-54 216.9 142 75.4
arahy.Tifrunner.gnm1.ann1.8BKN44 Arachis hypogaea HOM05D004221 ORTHO05D004998 1.8e-54 216.1 139 77.7
arahy.Tifrunner.gnm1.ann1.G8X8S8 Arachis hypogaea HOM05D004221 ORTHO05D004998 1.8e-54 216.1 139 77.7
arahy.Tifrunner.gnm1.ann1.VLL77W Arachis hypogaea HOM05D004221 ORTHO05D004998 1.8e-54 216.1 139 77.7
ATR0618G284 Amborella trichopoda HOM05D004221 ORTHO05D004998 2.4e-54 215.7 139 79.1
FAN15G1018 Fragaria x ananassa HOM05D004221 ORTHO05D004998 2.4e-54 215.7 146 75.3
Sc26g0002050 Simmondsia chinensis HOM05D004221 ORTHO05D004998 9.2e-54 213.8 141 78.0
C09p07830 Brassica napus HOM05D004221 ORTHO05D004998 1.2e-53 213.4 146 72.6
BolC9t53699H Brassica oleracea HOM05D004221 ORTHO05D004998 1.2e-53 213.4 146 72.6
Thhalv10005074m.g Eutrema salsugineum HOM05D004221 ORTHO05D004998 1.2e-53 213.4 146 72.6
BcaC04g23487 Brassica carinata HOM05D004221 ORTHO05D004998 1.6e-53 213.0 146 72.6
A06p34250 Brassica napus HOM05D004221 ORTHO05D004998 1.6e-53 213.0 146 72.6
BraA06t26357Z Brassica rapa HOM05D004221 ORTHO05D004998 1.6e-53 213.0 146 72.6
C07p44270 Brassica napus HOM05D004221 ORTHO05D004998 2.0e-53 212.6 146 71.9
Lj5g0004809 Lotus japonicus HOM05D004221 ORTHO05D004998 2.0e-53 212.6 143 74.8
BolC7t44950H Brassica oleracea HOM05D004221 ORTHO05D004998 2.7e-53 212.2 146 72.6
Glyma.20G103300 Glycine max HOM05D004221 ORTHO05D004998 2.7e-53 212.2 141 75.9
A09p07020 Brassica napus HOM05D004221 ORTHO05D004998 3.5e-53 211.8 146 72.6
BraA09t36350Z Brassica rapa HOM05D004221 ORTHO05D004998 3.5e-53 211.8 146 72.6
Haze_11779 Corylus avellana HOM05D004221 ORTHO05D004998 3.5e-53 211.8 172 66.3
Sp2g23860 Schrenkiella parvula HOM05D004221 ORTHO05D004998 3.5e-53 211.8 143 73.4
vmacro15987 Vaccinium macrocarpon HOM05D004221 ORTHO05D004998 1.0e-52 210.3 209 58.9
MBI06_g27498_MAGBIO Magnolia biondii HOM05D004221 ORTHO05D004998 1.3e-52 209.9 146 76.0
ClCG01G008100 Citrullus lanatus HOM05D004221 ORTHO05D004998 1.7e-52 209.5 185 62.2
Medtr1g114500 Medicago truncatula HOM05D004221 ORTHO05D004998 3.9e-52 208.4 148 72.3
Psat6g233960 Pisum sativum HOM05D004221 ORTHO05D004998 1.1e-51 206.8 148 71.6
Rhsim09G0069500 Rhododendron simsii HOM05D004221 ORTHO05D004998 1.5e-51 206.5 214 57.0
SalBow2G0865 Salvia bowleyana HOM05D004221 ORTHO05D004998 1.9e-51 206.1 122 83.6
TPR.G4058 Trifolium pratense HOM05D004221 ORTHO05D004998 1.9e-51 206.1 141 74.5
CDE02G2963 Ceratophyllum demersum HOM05D004221 ORTHO05D004998 3.3e-51 205.3 135 74.8
Glyma.10G286000 Glycine max HOM05D004221 ORTHO05D004998 5.6e-51 204.5 136 74.3
FAN10G1077 Fragaria x ananassa HOM05D004221 ORTHO05D004998 9.5e-51 203.8 146 74.0
FAN03G3278 Fragaria x ananassa HOM05D004221 ORTHO05D004998 1.2e-50 203.4 146 74.0
Sabra07G0062100 Salix brachista HOM05D004221 ORTHO05D004998 1.2e-50 203.4 194 57.2
Ca_11255_v3 Cicer arietinum L. HOM05D004221 ORTHO05D004998 1.6e-50 203.0 148 70.3
BcaB04g19880 Brassica carinata HOM05D004221 ORTHO05D004998 2.8e-50 202.2 156 66.7
Phvul.007G014900 Phaseolus vulgaris HOM05D004221 ORTHO05D004998 3.6e-50 201.8 141 71.6
VMungo0720G0328 Vigna mungo HOM05D004221 ORTHO05D004998 3.6e-50 201.8 141 70.9
CSS0001435 Camellia sinensis var. sinensis HOM05D004221 ORTHO05D004998 8.0e-50 200.7 115 86.1
FAN17G2528 Fragaria x ananassa HOM05D004221 ORTHO05D004998 3.1e-49 198.7 146 72.6
Nitab4.5_0000069g0160 Nicotiana tabacum HOM05D004221 ORTHO05D004998 3.1e-49 198.7 125 80.0
DCAR_023468 Daucus carota HOM05D004221 ORTHO05D004998 5.2e-49 198.0 122 81.1
Dinv17642 Davidia involucrata HOM05D004221 ORTHO05D004998 8.9e-49 197.2 118 83.1
Lj3A847T45 Lonicera japonica HOM05D004221 ORTHO05D004998 1.2e-48 196.8 115 84.3
Cc00_g07040 Coffea canephora HOM05D004221 ORTHO05D004998 2.0e-48 196.1 114 85.1
Duzib052G1226 Durio zibethinus HOM05D004221 ORTHO05D004998 1.3e-47 193.4 125 75.2
Peaxi162Scf00021g02223 Petunia axillaris HOM05D004221 ORTHO05D004998 1.7e-47 193.0 147 71.4
CDE04G0710 Ceratophyllum demersum HOM05D004221 ORTHO05D004998 2.2e-47 192.6 148 66.9
Cpa.g.sc60.76 Carica papaya HOM05D004221 ORTHO05D004998 6.4e-47 191.0 115 80.9
Duzib132G0203 Durio zibethinus HOM05D004221 ORTHO05D004998 1.1e-46 190.3 115 80.9
RcHm_v2.0_Chr2g0169341 Rosa chinensis HOM05D004221 ORTHO05D004998 7.0e-46 187.6 122 77.9
RcHm_v2.0_Chr6g0253901 Rosa chinensis HOM05D004221 ORTHO05D004998 7.0e-46 187.6 122 77.9
Sabra05G0074200 Salix brachista HOM05D004221 ORTHO05D004998 7.0e-46 187.6 238 48.7
TAR371G0536 Trochodendron aralioides HOM05D004221 ORTHO05D004998 1.2e-45 186.8 135 72.6
RcHm_v2.0_Chr4g0389221 Rosa chinensis HOM05D004221 ORTHO05D004998 1.6e-45 186.4 122 77.9
RcHm_v2.0_Chr1g0343381 Rosa chinensis HOM05D004221 ORTHO05D004998 4.6e-45 184.9 122 77.0
SGA_v2.0_scaffold358G49836 Striga asiatica HOM05D004221 ORTHO05D004998 6.0e-45 184.5 157 65.0
Atru.chr11.1114 Acer truncatum HOM05D004221 ORTHO05D004998 1.0e-44 183.7 116 77.6
RcHm_v2.0_Chr5g0039981 Rosa chinensis HOM05D004221 ORTHO05D004998 1.7e-44 183.0 122 76.2
RcHm_v2.0_Chr4g0391031 Rosa chinensis HOM05D004221 ORTHO05D004998 3.0e-44 182.2 122 75.4
RcHm_v2.0_Chr5g0070771 Rosa chinensis HOM05D004221 ORTHO05D004998 3.9e-44 181.8 122 75.4
RcHm_v2.0_Chr4g0391701 Rosa chinensis HOM05D004221 ORTHO05D004998 5.0e-44 181.4 122 75.4
SEGI_18337 Sequoiadendron giganteum HOM05D004221 ORTHO05D004998 8.6e-44 180.6 142 62.7
FAN07G1220 Fragaria x ananassa HOM05D004221 ORTHO05D004998 9.5e-43 177.2 121 73.6
AL2G24680 Arabidopsis lyrata HOM05D004221 ORTHO05D004998 3.6e-42 175.3 117 71.8
AL8G16830 Arabidopsis lyrata HOM05D004221 ORTHO05D004998 3.6e-42 175.3 117 71.8
SMO114G0084 Selaginella moellendorffii HOM05D004221 ORTHO05D004998 5.2e-41 171.4 142 57.0
Mapoly0041s0007 Marchantia polymorpha HOM05D004221 ORTHO05D004998 1.5e-40 169.9 138 60.1
Pp3c1_32320 Physcomitrium patens HOM05D004221 ORTHO05D004998 3.7e-39 165.2 141 61.0
AagrBONN_evm.TU.Sc2ySwM_117.4013 Anthoceros agrestis HOM05D004221 ORTHO05D004998 2.4e-38 162.5 140 56.4
Oeu013195.1 Olea europaea HOM05D004221 ORTHO05D004998 2.1e-34 149.4 87 85.1
Ah.01g012690 Amaranthus hybridus HOM05D004221 ORTHO05D004998 4.7e-34 148.3 88 84.1
Oeu041209.1 Olea europaea HOM05D004221 ORTHO05D004998 5.8e-32 141.4 89 83.1
AUR62032946 Chenopodium quinoa HOM05D004221 ORTHO05D004998 1.3e-31 140.2 94 73.4
SHI21211 Sapria himalayana HOM05D004221 ORTHO05D004998 2.1e-29 132.9 200 42.0
Lj9A327T34 Lonicera japonica HOM05D004221 ORTHO05D004998 2.3e-28 129.4 136 53.7
SEGI_37490 Sequoiadendron giganteum HOM05D004221 ORTHO05D004998 4.7e-26 121.7 82 68.3
CBR_g19844 Chara braunii HOM05D002142 ORTHO05D001189 6.2e-26 121.3 139 44.6
MCO07G569 Micromonas commoda HOM05D004221 ORTHO05D004998 1.4e-25 120.2 142 43.0
RcHm_v2.0_Chr5g0067401 Rosa chinensis HOM05D004221 ORTHO05D004998 1.4e-25 120.2 78 80.8
RcHm_v2.0_Chr6g0266371 Rosa chinensis HOM05D004221 ORTHO05D004998 1.4e-25 120.2 78 80.8
MELO3C000273.2 Cucumis melo HOM05D004221 ORTHO05D004998 9.0e-25 117.5 70 81.4
RcHm_v2.0_Chr3g0478071 Rosa chinensis HOM05D004221 ORTHO05D004998 9.0e-25 117.5 78 78.2
RcHm_v2.0_Chr6g0274601 Rosa chinensis HOM05D004221 ORTHO05D004998 1.1e-22 110.5 72 81.9
A02p41030 Brassica napus HOM05D004221 ORTHO05D004998 3.2e-22 109.0 76 68.4
MELO3C033736.2 Cucumis melo HOM05D004221 ORTHO05D004998 2.1e-21 106.3 64 81.2
Gohir.D01G168833 Gossypium hirsutum HOM05D004221 ORTHO05D004998 3.1e-17 92.4 65 67.7
Gorai.002G209700 Gossypium raimondii HOM05D004221 ORTHO05D004998 3.1e-17 92.4 65 67.7
Oeu013194.1 Olea europaea HOM05D004221 ORTHO05D004998 6.9e-17 91.3 52 88.5
PRCOL_00006790 Prasinoderma coloniale HOM05D004221 ORTHO05D004998 3.4e-16 89.0 144 34.0
MBI19_g48155_MAGBIO Magnolia biondii HOM05D004221 ORTHO05D004998 2.2e-15 86.3 69 68.1
Sed0018067 Sechium edule HOM05D004221 ORTHO05D004998 4.9e-15 85.1 55 78.2
Gohir.A01G178033 Gossypium hirsutum HOM05D004221 ORTHO05D004998 6.4e-15 84.7 65 63.1
MBI19_g31737_MAGBIO Magnolia biondii HOM05D004221 ORTHO05D004998 1.4e-14 83.6 69 66.7
Cre12.g523150 Chlamydomonas reinhardtii HOM05D004221 ORTHO05D004998 4.2e-14 82.0 136 31.6
SalBow3G1738 Salvia bowleyana HOM05D004221 ORTHO05D004998 1.3e-12 77.0 53 69.8
AL1G29290 Arabidopsis lyrata HOM05D004221 ORTHO05D004998 1.1e-11 73.9 55 67.3
AL8G24780 Arabidopsis lyrata HOM05D004221 ORTHO05D004998 1.1e-11 73.9 55 67.3
SalBow6G4331 Salvia bowleyana HOM05D004221 ORTHO05D004998 7.6e-08 61.2 47 66.0


User provided reference genes

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