Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Migut.E00684 Erythranthe guttata HOM05D004580 ORTHO05D005917 1.5e-209 732.6 387 100.0
MSTRG.2066 Avicennia marina HOM05D004580 ORTHO05D005917 3.7e-179 631.7 359 83.6
MSTRG.13678 Avicennia marina HOM05D004580 ORTHO05D005917 1.4e-178 629.8 358 83.2
SGA_v2.0_scaffold358G49840 Striga asiatica HOM05D004580 ORTHO05D005917 4.3e-172 608.2 360 80.3
Oeu036766.1 Olea europaea HOM05D004580 ORTHO05D005917 1.0e-168 597.0 354 79.7
Nitab4.5_0000069g0120 Nicotiana tabacum HOM05D004580 ORTHO05D005917 1.2e-158 563.5 353 75.4
Nitab4.5_0013217g0010 Nicotiana tabacum HOM05D004580 ORTHO05D005917 2.0e-156 556.2 353 74.8
PGSC0003DMG402016396 Solanum tuberosum HOM05D004580 ORTHO05D005917 1.3e-155 553.5 355 73.5
Sopen01g003800 Solanum pennellii HOM05D004580 ORTHO05D005917 7.0e-154 547.7 354 73.7
Solyc01g008280.4 Solanum lycopersicum HOM05D004580 ORTHO05D005917 1.6e-153 546.6 354 73.2
Glyma.11G184601 Glycine max HOM05D004580 ORTHO05D005917 5.5e-151 538.1 341 75.1
Hma1.2p1_0044F.1_g026170 Hydrangea macrophylla HOM05D004580 ORTHO05D005917 7.2e-151 537.7 357 71.1
Dinv17643 Davidia involucrata HOM05D004580 ORTHO05D005917 2.1e-150 536.2 341 73.3
Manes.18G065933 Manihot esculenta HOM05D004580 ORTHO05D005917 1.4e-149 533.5 360 69.4
COL.COLO4_12032 Corchorus olitorius HOM05D004580 ORTHO05D005917 4.0e-149 531.9 362 69.3
VMungo1127G0933 Vigna mungo HOM05D004580 ORTHO05D005917 8.8e-149 530.8 358 72.3
CiPaw.07G178200 Carya illinoinensis HOM05D004580 ORTHO05D005917 3.3e-148 528.9 358 69.0
HanXRQChr04g0124871 Helianthus annuus HOM05D004580 ORTHO05D005917 4.4e-148 528.5 356 70.2
Sed0021368 Sechium edule HOM05D004580 ORTHO05D005917 5.7e-148 528.1 355 70.4
ECA236G1081 Erigeron canadensis HOM05D004580 ORTHO05D005917 9.7e-148 527.3 358 70.7
Duzib093G0091 Durio zibethinus HOM05D004580 ORTHO05D005917 1.3e-147 526.9 362 68.0
AT4G08960 Arabidopsis thaliana HOM05D004580 ORTHO05D005917 2.8e-147 525.8 363 68.3
CARHR259970 Cardamine hirsuta HOM05D004580 ORTHO05D005917 2.8e-147 525.8 362 68.0
Lsat_1_v5_gn_4_64561 Lactuca sativa HOM05D004580 ORTHO05D005917 2.8e-147 525.8 357 70.0
ClCG08G011200 Citrullus lanatus HOM05D004580 ORTHO05D005917 3.7e-147 525.4 361 71.7
Gorai.010G039500 Gossypium raimondii HOM05D004580 ORTHO05D005917 3.7e-147 525.4 362 68.2
Phvul.011G102600 Phaseolus vulgaris HOM05D004580 ORTHO05D005917 4.8e-147 525.0 358 71.2
CsaV3_2G029780 Cucumis sativus L. HOM05D004580 ORTHO05D005917 6.3e-147 524.6 360 70.3
AL6G41550 Arabidopsis lyrata HOM05D004580 ORTHO05D005917 1.1e-146 523.9 362 68.2
Atru.chr13.1137 Acer truncatum HOM05D004580 ORTHO05D005917 1.8e-146 523.1 356 69.9
Eucgr.B00032 Eucalyptus grandis HOM05D004580 ORTHO05D005917 1.8e-146 523.1 361 68.4
RcHm_v2.0_Chr7g0243401 Rosa chinensis HOM05D004580 ORTHO05D005917 3.1e-146 522.3 356 70.5
Gohir.A06G034900 Gossypium hirsutum HOM05D004580 ORTHO05D005917 4.1e-146 521.9 362 67.7
Gohir.D06G035500 Gossypium hirsutum HOM05D004580 ORTHO05D005917 5.3e-146 521.5 362 68.0
PGR031G1028 Punica granatum HOM05D004580 ORTHO05D005917 5.3e-146 521.5 361 67.9
FvH4_6g23990 Fragaria vesca HOM05D004580 ORTHO05D005917 7.0e-146 521.2 356 69.9
FAN14G1039 Fragaria x ananassa HOM05D004580 ORTHO05D005917 7.0e-146 521.2 356 69.9
Carub.0006s2756 Capsella rubella HOM05D004580 ORTHO05D005917 9.1e-146 520.8 362 68.2
BcaB01g02835 Brassica carinata HOM05D004580 ORTHO05D005917 1.2e-145 520.4 392 63.0
BcaC01g04745 Brassica carinata HOM05D004580 ORTHO05D005917 1.2e-145 520.4 392 62.5
Sp6g08660 Schrenkiella parvula HOM05D004580 ORTHO05D005917 1.6e-145 520.0 362 67.1
BcaB01g02823 Brassica carinata HOM05D004580 ORTHO05D005917 2.0e-145 519.6 392 63.0
Cfa013658 Carpinus fangiana HOM05D004580 ORTHO05D005917 2.0e-145 519.6 358 68.7
TWI12G1022 Tripterygium wilfordii HOM05D004580 ORTHO05D005917 2.0e-145 519.6 360 67.5
DCAR_023183 Daucus carota HOM05D004580 ORTHO05D005917 2.7e-145 519.2 358 69.3
Ciclev10001487m.g Citrus clementina HOM05D004580 ORTHO05D005917 4.5e-145 518.5 361 67.3
Haze_22292 Corylus avellana HOM05D004580 ORTHO05D005917 5.9e-145 518.1 358 68.7
MELO3C011036.2 Cucumis melo HOM05D004580 ORTHO05D005917 5.9e-145 518.1 360 69.4
DCAR_002598 Daucus carota HOM05D004580 ORTHO05D005917 5.9e-145 518.1 358 68.7
A03p28330 Brassica napus HOM05D004580 ORTHO05D005917 7.7e-145 517.7 388 62.9
BraA03t12037Z Brassica rapa HOM05D004580 ORTHO05D005917 1.0e-144 517.3 388 63.1
TAR625G1360 Trochodendron aralioides HOM05D004580 ORTHO05D005917 1.0e-144 517.3 341 71.0
Aa31LG9G14650 Aethionema arabicum HOM05D004580 ORTHO05D005917 1.3e-144 516.9 360 67.2
arahy.Tifrunner.gnm1.ann1.UE4JHM Arachis hypogaea HOM05D004580 ORTHO05D005917 1.7e-144 516.5 341 71.3
C03p34240 Brassica napus HOM05D004580 ORTHO05D005917 2.9e-144 515.8 388 62.6
BolC3t15733H Brassica oleracea HOM05D004580 ORTHO05D005917 2.9e-144 515.8 388 62.6
BcaB01g02381 Brassica carinata HOM05D004580 ORTHO05D005917 3.8e-144 515.4 363 66.7
C09p37760 Brassica napus HOM05D004580 ORTHO05D005917 5.0e-144 515.0 361 65.7
BolC9t56609H Brassica oleracea HOM05D004580 ORTHO05D005917 5.0e-144 515.0 361 65.7
CANSAT25G2089 Cannabis sativa HOM05D004580 ORTHO05D005917 6.5e-144 514.6 358 68.4
Potri.005G162900 Populus trichocarpa HOM05D004580 ORTHO05D005917 8.5e-144 514.2 362 67.7
arahy.Tifrunner.gnm1.ann1.T3Z839 Arachis hypogaea HOM05D004580 ORTHO05D005917 1.1e-143 513.8 340 71.5
THA.LOC104813113 Tarenaya hassleriana HOM05D004580 ORTHO05D005917 1.1e-143 513.8 362 67.4
Thecc.08G104300 Theobroma cacao HOM05D004580 ORTHO05D005917 1.1e-143 513.8 323 72.8
Aqoxy7G04111 Aquilegia oxysepala HOM05D004580 ORTHO05D005917 3.2e-143 512.3 340 70.6
Sabra05G0123100 Salix brachista HOM05D004580 ORTHO05D005917 3.2e-143 512.3 391 64.2
FAN05G1019 Fragaria x ananassa HOM05D004580 ORTHO05D005917 4.2e-143 511.9 341 69.2
Duzib041G0230 Durio zibethinus HOM05D004580 ORTHO05D005917 5.5e-143 511.5 362 66.3
Actinidia04333 Actinidia chinensis HOM05D004580 ORTHO05D005917 9.4e-143 510.8 355 67.9
RcHm_v2.0_Chr1g0321971 Rosa chinensis HOM05D004580 ORTHO05D005917 4.7e-142 508.4 358 67.3
MD08G1227100 Malus domestica HOM05D004580 ORTHO05D005917 6.1e-142 508.1 343 68.5
Nn5g30036 Nelumbo nucifera HOM05D004580 ORTHO05D005917 1.4e-141 506.9 357 68.3
Nn5g30292 Nelumbo nucifera HOM05D004580 ORTHO05D005917 1.4e-141 506.9 336 70.2
Thhalv10028722m.g Eutrema salsugineum HOM05D004580 ORTHO05D005917 1.8e-141 506.5 393 61.6
Potri.002G099000 Populus trichocarpa HOM05D004580 ORTHO05D005917 3.0e-141 505.8 361 66.5
Prupe.1G521000 Prunus persica HOM05D004580 ORTHO05D005917 6.8e-141 504.6 359 66.9
vmacro15988 Vaccinium macrocarpon HOM05D004580 ORTHO05D005917 2.0e-140 503.1 361 67.3
QL12p037342 Quercus lobata HOM05D004580 ORTHO05D005917 2.6e-140 502.7 357 66.4
Cpa.g.sc36.160 Carica papaya HOM05D004580 ORTHO05D005917 3.4e-140 502.3 319 70.8
MD15G1419400 Malus domestica HOM05D004580 ORTHO05D005917 3.4e-140 502.3 359 65.7
Sc10g0006870 Simmondsia chinensis HOM05D004580 ORTHO05D005917 1.1e-138 497.3 371 63.9
PSO781G0322 Papaver somniferum HOM05D004580 ORTHO05D005917 2.4e-138 496.1 358 63.7
BcaC04g20934 Brassica carinata HOM05D004580 ORTHO05D005917 3.1e-138 495.7 361 64.8
Sabra02G0077800 Salix brachista HOM05D004580 ORTHO05D005917 3.1e-138 495.7 340 68.8
Hund08631 Selenicereus undatus HOM05D004580 ORTHO05D005917 3.1e-138 495.7 369 64.8
Lj3P847T35 Lonicera japonica HOM05D004580 ORTHO05D005917 7.0e-138 494.6 306 75.5
CSS0036827 Camellia sinensis var. sinensis HOM05D004580 ORTHO05D005917 9.1e-138 494.2 358 66.5
CSS0039091 Camellia sinensis var. sinensis HOM05D004580 ORTHO05D005917 9.1e-138 494.2 358 66.5
PSO541G6503 Papaver somniferum HOM05D004580 ORTHO05D005917 9.1e-138 494.2 358 65.9
AUR62017729 Chenopodium quinoa HOM05D004580 ORTHO05D005917 1.2e-137 493.8 365 67.7
CsaV3_3G047600 Cucumis sativus L. HOM05D004580 ORTHO05D005917 2.7e-137 492.7 343 67.1
MELO3C003564.2 Cucumis melo HOM05D004580 ORTHO05D005917 1.0e-136 490.7 335 67.5
Ah.01g012710 Amaranthus hybridus HOM05D004580 ORTHO05D005917 1.7e-136 490.0 358 65.1
TAR381G0740 Trochodendron aralioides HOM05D004580 ORTHO05D005917 8.6e-136 487.6 341 68.0
MBI05_g34722_MAGBIO Magnolia biondii HOM05D004580 ORTHO05D005917 1.1e-135 487.3 341 66.0
ClCG11G014220 Citrullus lanatus HOM05D004580 ORTHO05D005917 1.5e-135 486.9 345 65.8
ATR0706G027 Amborella trichopoda HOM05D004580 ORTHO05D005917 4.2e-135 485.3 337 68.2
Sed0008659 Sechium edule HOM05D004580 ORTHO05D005917 5.5e-135 485.0 317 68.8
CSS0011251 Camellia sinensis var. sinensis HOM05D004580 ORTHO05D005917 1.2e-134 483.8 309 71.8
CDE05G3003 Ceratophyllum demersum HOM05D004580 ORTHO05D005917 1.6e-134 483.4 341 66.3
Medtr4g053370 Medicago truncatula HOM05D004580 ORTHO05D005917 1.4e-133 480.3 341 66.9
Peaxi162Scf00021g02317 Petunia axillaris HOM05D004580 ORTHO05D005917 2.3e-133 479.6 352 66.5
Rhsim09G0069400 Rhododendron simsii HOM05D004580 ORTHO05D005917 3.0e-133 479.2 363 65.3
GSVIVG01009068001 Vitis vinifera HOM05D004580 ORTHO05D005917 3.0e-133 479.2 341 67.4
Ca_19393_v3 Cicer arietinum L. HOM05D004580 ORTHO05D005917 4.0e-133 478.8 301 72.8
PSO541G6453 Papaver somniferum HOM05D004580 ORTHO05D005917 4.0e-133 478.8 357 62.7
EL10Ac9g22979 Beta vulgaris HOM05D004580 ORTHO05D005917 5.2e-133 478.4 346 66.8
Lalb_Chr03g0028011 Lupinus albus HOM05D004580 ORTHO05D005917 2.6e-132 476.1 364 64.6
Psat7g188520 Pisum sativum HOM05D004580 ORTHO05D005917 4.4e-132 475.3 298 72.8
Lj3g0026440 Lotus japonicus HOM05D004580 ORTHO05D005917 3.7e-131 472.2 341 66.9
SEGI_24357 Sequoiadendron giganteum HOM05D004580 ORTHO05D005917 4.9e-131 471.9 356 63.8
MBI02_g02175_MAGBIO Magnolia biondii HOM05D004580 ORTHO05D005917 9.2e-130 467.6 329 67.2
FvH4_5g29380 Fragaria vesca HOM05D004580 ORTHO05D005917 8.6e-128 461.1 310 68.7
Nn1g05417 Nelumbo nucifera HOM05D004580 ORTHO05D005917 1.1e-127 460.7 331 66.2
HPP92_004278 Vanilla planifolia HOM05D004580 ORTHO05D005917 4.4e-124 448.7 364 61.5
Zm00001eb372770 Zea mays HOM05D004580 ORTHO05D005917 9.8e-124 447.6 369 61.0
Os06g0219800 Oryza sativa ssp. japonica HOM05D004580 ORTHO05D005917 4.1e-122 442.2 368 60.6
AagrBONN_evm.TU.Sc2ySwM_117.2526 Anthoceros agrestis HOM05D004580 ORTHO05D005917 3.9e-120 435.6 353 58.9
Pp3c1_41950 Physcomitrium patens HOM05D004580 ORTHO05D005917 1.5e-119 433.7 334 61.4
Mapoly0004s0171 Marchantia polymorpha HOM05D004580 ORTHO05D005917 2.5e-119 433.0 311 63.0
Pp3c2_670 Physcomitrium patens HOM05D004580 ORTHO05D005917 1.1e-117 427.6 302 64.6
Gorai.009G235200 Gossypium raimondii HOM05D004580 ORTHO05D005917 1.4e-114 417.2 320 61.9
SHI33348 Sapria himalayana HOM05D004580 ORTHO05D005917 9.2e-114 414.5 358 56.1
SMO329G0013 Selaginella moellendorffii HOM05D004580 ORTHO05D005917 3.9e-112 409.1 322 59.9
HPP92_016361 Vanilla planifolia HOM05D004580 ORTHO05D005917 1.1e-109 401.0 303 64.4
FAN18G2046 Fragaria x ananassa HOM05D004580 ORTHO05D005917 4.0e-109 399.1 286 66.1
Gohir.D05G227500 Gossypium hirsutum HOM05D004580 ORTHO05D005917 1.2e-108 397.5 255 70.2
CBR_g45439 Chara braunii HOM05D004580 ORTHO05D005917 2.4e-106 389.8 342 55.0
Glyma.12G087751 Glycine max HOM05D004580 ORTHO05D005917 3.6e-102 375.9 206 85.4
Gohir.A05G224950 Gossypium hirsutum HOM05D004580 ORTHO05D005917 6.2e-102 375.2 304 60.5
FAN02G1810 Fragaria x ananassa HOM05D004580 ORTHO05D005917 2.2e-99 366.7 200 81.5
TPR.G17228 Trifolium pratense HOM05D004580 ORTHO05D005917 3.8e-99 365.9 311 57.6
unitig_8.g3592 Utricularia gibba HOM05D004580 ORTHO05D005917 1.1e-98 364.4 201 82.6
Lalb_Chr19g0136591 Lupinus albus HOM05D004580 ORTHO05D005917 1.8e-93 347.1 364 50.5
CAN.G282.45 Capsicum annuum HOM05D004580 ORTHO05D005917 7.3e-87 325.1 231 69.3
BraA09t38542Z Brassica rapa HOM05D004580 ORTHO05D005917 5.3e-85 318.9 221 67.4
A09p29790 Brassica napus HOM05D004580 ORTHO05D005917 5.8e-84 315.5 179 79.3
SEGI_19435 Sequoiadendron giganteum HOM05D004580 ORTHO05D005917 1.8e-77 293.9 265 53.2
Oeu013193.1 Olea europaea HOM05D004580 ORTHO05D005917 3.4e-76 289.7 191 72.3
Cre13.g580650 Chlamydomonas reinhardtii HOM05D004580 ORTHO05D005917 4.2e-74 282.7 395 39.0
Aqoxy6G00748 Aquilegia oxysepala HOM05D004580 ORTHO05D005917 6.0e-73 278.9 232 59.5
FAN24G1342 Fragaria x ananassa HOM05D004580 ORTHO05D005917 2.3e-72 276.9 229 59.4
PRCOL_00005481 Prasinoderma coloniale HOM05D004580 ORTHO05D005917 4.8e-70 269.2 343 41.7
MCO01G633 Micromonas commoda HOM05D004580 ORTHO05D005917 2.0e-68 263.8 302 43.4
FvH4_2g11953 Fragaria vesca HOM05D004580 ORTHO05D000007 1.9e-66 257.3 221 57.0
CDE05G0498 Ceratophyllum demersum HOM05D004580 ORTHO05D005917 1.5e-60 237.7 205 54.6
Cfa021829 Carpinus fangiana HOM05D004580 ORTHO05D011646 3.2e-58 229.9 315 38.7
Cfa001645 Carpinus fangiana HOM05D004580 ORTHO05D020348 2.2e-54 217.2 360 36.4
GSVIVG01009057001 Vitis vinifera HOM05D004580 ORTHO05D005917 1.5e-44 184.5 125 70.4
FAN24G1075 Fragaria x ananassa HOM05D004580 ORTHO05D005917 3.0e-32 143.7 148 50.0
Nn3g16512 Nelumbo nucifera HOM05D004580 ORTHO05D005917 5.2e-24 116.3 64 76.6
Cfa014845 Carpinus fangiana HOM05D000016 ORTHO05D000725 1.3e-22 111.7 105 47.6
Nn5g29558 Nelumbo nucifera HOM05D004580 ORTHO05D005917 1.3e-22 111.7 112 50.0
FvH4_4g06652 Fragaria vesca HOM05D004580 ORTHO05D000031 2.0e-20 104.4 57 78.9
unitig_8.g3591 Utricularia gibba HOM05D004580 ORTHO05D005917 1.4e-08 65.1 67 52.2
Nitab4.5_0006124g0020 Nicotiana tabacum HOM05D000011 ORTHO05D036898 3.7e-06 57.0 29 79.3


User provided reference genes

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