Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Migut.E00628 Erythranthe guttata HOM05D004525 ORTHO05D005295 1.5e-99 366.3 207 100.0
SalBow6G4763 Salvia bowleyana HOM05D004525 ORTHO05D005295 7.9e-80 300.8 181 85.6
SGA_v2.0_scaffold14G07039 Striga asiatica HOM05D004525 ORTHO05D005295 8.8e-79 297.4 185 82.2
SGA_v2.0_scaffold36G14274 Striga asiatica HOM05D004525 ORTHO05D005295 8.8e-79 297.4 185 82.2
MSTRG.12201 Avicennia marina HOM05D004525 ORTHO05D005295 9.7e-78 293.9 180 83.9
unitig_744.g24303 Utricularia gibba HOM05D004525 ORTHO05D005295 6.3e-77 291.2 187 80.2
MSTRG.24865 Avicennia marina HOM05D004525 ORTHO05D005295 3.1e-76 288.9 182 81.9
Nitab4.5_0001367g0040 Nicotiana tabacum HOM05D004525 ORTHO05D005295 1.3e-74 283.5 188 77.1
Lsat_1_v5_gn_3_14420 Lactuca sativa HOM05D004525 ORTHO05D005295 2.9e-74 282.3 205 70.7
PGSC0003DMG400029951 Solanum tuberosum HOM05D004525 ORTHO05D005295 1.9e-73 279.6 191 76.4
Solyc08g065160.3 Solanum lycopersicum HOM05D004525 ORTHO05D005295 4.2e-73 278.5 191 75.9
Sopen08g018760 Solanum pennellii HOM05D004525 ORTHO05D005295 4.2e-73 278.5 191 75.9
Nitab4.5_0012632g0010 Nicotiana tabacum HOM05D004525 ORTHO05D005295 5.5e-73 278.1 186 76.9
Gohir.A12G240200 Gossypium hirsutum HOM05D004525 ORTHO05D005295 6.1e-72 274.6 205 70.7
Duzib068G1021 Durio zibethinus HOM05D004525 ORTHO05D005295 8.0e-72 274.2 205 70.7
HanXRQChr17g0534221 Helianthus annuus HOM05D004525 ORTHO05D005295 1.8e-71 273.1 205 70.2
Cc08_g16770 Coffea canephora HOM05D004525 ORTHO05D005295 3.0e-71 272.3 158 86.1
Duzib205G1187 Durio zibethinus HOM05D004525 ORTHO05D005295 5.2e-71 271.6 184 74.5
Gorai.008G258800 Gossypium raimondii HOM05D004525 ORTHO05D005295 6.7e-71 271.2 205 69.8
Thecc.03G220900 Theobroma cacao HOM05D004525 ORTHO05D005295 8.8e-71 270.8 205 69.3
Gohir.D12G241500 Gossypium hirsutum HOM05D004525 ORTHO05D005295 2.0e-70 269.6 205 69.3
GSVIVG01019654001 Vitis vinifera HOM05D004525 ORTHO05D005295 3.3e-70 268.9 184 76.6
Actinidia22207 Actinidia chinensis HOM05D004525 ORTHO05D005295 5.7e-70 268.1 185 73.5
COL.COLO4_10799 Corchorus olitorius HOM05D004525 ORTHO05D005295 5.7e-70 268.1 205 69.3
Cpa.g.sc27.182 Carica papaya HOM05D004525 ORTHO05D005295 1.3e-69 266.9 205 69.8
Cfa006748 Carpinus fangiana HOM05D004525 ORTHO05D005295 1.7e-69 266.5 201 70.6
Haze_04010 Corylus avellana HOM05D004525 ORTHO05D005295 1.7e-69 266.5 201 71.1
Hma1.2p1_0456F.1_g156630 Hydrangea macrophylla HOM05D004525 ORTHO05D005295 2.2e-69 266.2 155 87.1
Manes.09G101000 Manihot esculenta HOM05D004525 ORTHO05D005295 2.8e-69 265.8 205 69.8
CSS0029651 Camellia sinensis var. sinensis HOM05D004525 ORTHO05D005295 3.7e-69 265.4 185 74.1
CiPaw.12G077100 Carya illinoinensis HOM05D004525 ORTHO05D005295 3.7e-69 265.4 205 69.3
Dinv38179 Davidia involucrata HOM05D004525 ORTHO05D005295 3.7e-69 265.4 159 83.6
QL12p036922 Quercus lobata HOM05D004525 ORTHO05D005295 6.3e-69 264.6 206 68.9
QL02p027997 Quercus lobata HOM05D004525 ORTHO05D005295 8.2e-69 264.2 206 68.4
unitig_21.g20890 Utricularia gibba HOM05D004525 ORTHO05D005295 1.4e-68 263.5 188 73.9
Cfa011920 Carpinus fangiana HOM05D004525 ORTHO05D005295 2.4e-68 262.7 182 75.3
Potri.001G083801 Populus trichocarpa HOM05D004525 ORTHO05D005295 3.1e-68 262.3 183 74.3
CiPaw.11G112000 Carya illinoinensis HOM05D004525 ORTHO05D005295 7.0e-68 261.2 184 72.8
CSS0049671 Camellia sinensis var. sinensis HOM05D004525 ORTHO05D005295 1.6e-67 260.0 185 73.0
MD06G1119500 Malus domestica HOM05D004525 ORTHO05D005295 1.6e-67 260.0 205 67.3
Ciclev10022441m.g Citrus clementina HOM05D004525 ORTHO05D005295 2.0e-67 259.6 185 70.8
TWI56G0194 Tripterygium wilfordii HOM05D004525 ORTHO05D005295 3.5e-67 258.8 187 71.1
Atru.chr9.1879 Acer truncatum HOM05D004525 ORTHO05D005295 4.5e-67 258.5 205 67.3
CSS0036474 Camellia sinensis var. sinensis HOM05D004525 ORTHO05D005295 4.5e-67 258.5 185 72.4
Prupe.2G307200 Prunus persica HOM05D004525 ORTHO05D005295 4.5e-67 258.5 184 72.8
Sabra01G0060700 Salix brachista HOM05D004525 ORTHO05D005295 4.5e-67 258.5 185 72.4
THA.LOC104809303 Tarenaya hassleriana HOM05D004525 ORTHO05D005295 4.5e-67 258.5 182 72.0
DCAR_011870 Daucus carota HOM05D004525 ORTHO05D005295 1.0e-66 257.3 187 72.2
PGR031G2275 Punica granatum HOM05D004525 ORTHO05D005295 1.0e-66 257.3 183 72.1
MD14G1136300 Malus domestica HOM05D004525 ORTHO05D005295 2.9e-66 255.8 184 71.7
TAR629G2664 Trochodendron aralioides HOM05D004525 ORTHO05D005295 2.9e-66 255.8 182 74.2
FvH4_4g11450 Fragaria vesca HOM05D004525 ORTHO05D005295 5.0e-66 255.0 184 70.1
RcHm_v2.0_Chr1g0332661 Rosa chinensis HOM05D004525 ORTHO05D005295 5.0e-66 255.0 184 71.2
ClCG10G000810 Citrullus lanatus HOM05D004525 ORTHO05D005295 6.5e-66 254.6 163 78.5
Nn3g18812 Nelumbo nucifera HOM05D004525 ORTHO05D005295 8.5e-66 254.2 174 74.7
FAN07G0034 Fragaria x ananassa HOM05D004525 ORTHO05D005295 1.1e-65 253.8 184 70.1
Prupe.5G130000 Prunus persica HOM05D004525 ORTHO05D005295 1.1e-65 253.8 184 70.7
EL10Ac5g12425 Beta vulgaris HOM05D004525 ORTHO05D005295 1.5e-65 253.4 205 66.3
RcHm_v2.0_Chr6g0273561 Rosa chinensis HOM05D004525 ORTHO05D005295 1.5e-65 253.4 184 70.7
CsaV3_3G000870 Cucumis sativus L. HOM05D004525 ORTHO05D005295 1.9e-65 253.1 165 78.2
TWI36G0523 Tripterygium wilfordii HOM05D004525 ORTHO05D005295 1.9e-65 253.1 183 70.5
Aqoxy5G04330 Aquilegia oxysepala HOM05D004525 ORTHO05D005295 2.5e-65 252.7 177 75.1
Oeu022035.1 Olea europaea HOM05D004525 ORTHO05D005295 4.2e-65 251.9 244 60.2
Aqoxy3G00526 Aquilegia oxysepala HOM05D004525 ORTHO05D005295 5.5e-65 251.5 177 74.6
ECA246G3328 Erigeron canadensis HOM05D004525 ORTHO05D005295 7.2e-65 251.1 186 70.4
DCAR_006547 Daucus carota HOM05D004525 ORTHO05D005295 1.2e-64 250.4 163 77.3
Rhsim07G0078000 Rhododendron simsii HOM05D004525 ORTHO05D005295 1.2e-64 250.4 205 66.8
PSO478G2085 Papaver somniferum HOM05D004525 ORTHO05D005295 2.1e-64 249.6 156 79.5
Eucgr.C04229 Eucalyptus grandis HOM05D004525 ORTHO05D005295 2.7e-64 249.2 184 70.1
PSO017G1681 Papaver somniferum HOM05D004525 ORTHO05D005295 2.7e-64 249.2 156 79.5
MBI04_g25309_MAGBIO Magnolia biondii HOM05D004525 ORTHO05D005295 4.7e-64 248.4 177 71.8
AT1G26665 Arabidopsis thaliana HOM05D004525 ORTHO05D005295 8.0e-64 247.7 183 67.8
Potri.003G146900 Populus trichocarpa HOM05D004525 ORTHO05D005295 8.0e-64 247.7 205 64.9
AL1G39060 Arabidopsis lyrata HOM05D004525 ORTHO05D005295 1.0e-63 247.3 184 67.4
Ca_02991_v3 Cicer arietinum L. HOM05D004525 ORTHO05D005295 1.0e-63 247.3 185 68.1
Ca_17957_v3 Cicer arietinum L. HOM05D004525 ORTHO05D005295 1.8e-63 246.5 183 68.9
Thhalv10008848m.g Eutrema salsugineum HOM05D004525 ORTHO05D005295 1.8e-63 246.5 183 68.3
FAN22G0758 Fragaria x ananassa HOM05D004525 ORTHO05D005295 1.8e-63 246.5 185 69.2
Sabra03G0106900 Salix brachista HOM05D004525 ORTHO05D005295 1.8e-63 246.5 205 64.4
Sed0024458 Sechium edule HOM05D004525 ORTHO05D005295 2.3e-63 246.1 163 74.8
Hund11348 Selenicereus undatus HOM05D004525 ORTHO05D005295 6.7e-63 244.6 159 76.7
vmacro11499 Vaccinium macrocarpon HOM05D004525 ORTHO05D005295 8.8e-63 244.2 169 75.1
Sc01g0010720 Simmondsia chinensis HOM05D004525 ORTHO05D005295 1.2e-62 243.8 187 66.3
Zm00001eb103320 Zea mays HOM05D004525 ORTHO05D005295 1.5e-62 243.4 168 74.4
Lj8A200T57 Lonicera japonica HOM05D004525 ORTHO05D005295 5.7e-62 241.5 151 81.5
Sp1g22150 Schrenkiella parvula HOM05D004525 ORTHO05D005295 1.7e-61 240.0 183 64.5
A07p13030 Brassica napus HOM05D001252 ORTHO05D005295 2.2e-61 239.6 185 66.5
BcaC06g35131 Brassica carinata HOM05D004525 ORTHO05D005295 3.7e-61 238.8 185 66.5
Glyma.08G296500 Glycine max HOM05D004525 ORTHO05D005295 3.7e-61 238.8 205 62.0
Phvul.003G069600 Phaseolus vulgaris HOM05D004525 ORTHO05D005295 3.7e-61 238.8 205 62.4
Lalb_Chr12g0205381 Lupinus albus HOM05D004525 ORTHO05D005295 4.8e-61 238.4 185 65.9
VMungo0251G0643 Vigna mungo HOM05D004525 ORTHO05D005295 4.8e-61 238.4 199 63.3
Ah.12g053230 Amaranthus hybridus HOM05D004525 ORTHO05D005295 6.3e-61 238.0 157 75.8
BraA07t29074Z Brassica rapa HOM05D001252 ORTHO05D005295 6.3e-61 238.0 160 72.5
CARHR212640 Cardamine hirsuta HOM05D004525 ORTHO05D005295 6.3e-61 238.0 159 73.0
Lalb_Chr13g0294931 Lupinus albus HOM05D004525 ORTHO05D005295 8.2e-61 237.7 182 67.0
Peaxi162Scf01444g00013 Petunia axillaris HOM05D004525 ORTHO05D005295 8.2e-61 237.7 187 69.0
C07p19480 Brassica napus HOM05D001252 ORTHO05D005295 1.1e-60 237.3 185 65.9
HPP92_025871 Vanilla planifolia HOM05D004525 ORTHO05D005295 1.4e-60 236.9 171 68.4
Haze_09177 Corylus avellana HOM05D004525 ORTHO05D005295 1.8e-60 236.5 189 67.7
ATR0620G086 Amborella trichopoda HOM05D004525 ORTHO05D005295 4.1e-60 235.3 168 72.6
Zm00001eb319380 Zea mays HOM05D004525 ORTHO05D005295 4.1e-60 235.3 185 68.6
Aa31LG9G260 Aethionema arabicum HOM05D004525 ORTHO05D005295 5.3e-60 235.0 196 64.3
BcaB03g14082 Brassica carinata HOM05D004525 ORTHO05D005295 7.0e-60 234.6 183 65.6
AUR62007057 Chenopodium quinoa HOM05D004525 ORTHO05D005295 1.2e-59 233.8 159 73.0
Medtr8g085570 Medicago truncatula HOM05D004525 ORTHO05D005295 1.2e-59 233.8 185 64.3
CARHR025300 Cardamine hirsuta HOM05D004525 ORTHO05D005295 1.6e-59 233.4 185 65.4
Glyma.18G125700 Glycine max HOM05D004525 ORTHO05D005295 2.7e-59 232.6 205 62.0
vmacro13851 Vaccinium macrocarpon HOM05D004525 ORTHO05D005295 1.3e-58 230.3 186 67.7
Os09g0528300 Oryza sativa ssp. japonica HOM05D004525 ORTHO05D005295 2.2e-58 229.6 156 74.4
AL7G47302 Arabidopsis lyrata HOM05D004525 ORTHO05D005295 2.9e-58 229.2 164 72.0
Psat7g073160 Pisum sativum HOM05D004525 ORTHO05D005295 2.9e-58 229.2 185 63.8
TPR.G15828 Trifolium pratense HOM05D004525 ORTHO05D005295 1.1e-57 227.3 185 65.4
AT5G41910 Arabidopsis thaliana HOM05D004525 ORTHO05D005295 1.9e-57 226.5 162 71.0
CANSAT56G2042 Cannabis sativa HOM05D004525 ORTHO05D005295 3.2e-57 225.7 194 63.4
Carub.0001s2436 Capsella rubella HOM05D004525 ORTHO05D005295 1.2e-56 223.8 184 62.5
Lj4g0018067 Lotus japonicus HOM05D004525 ORTHO05D005295 3.0e-55 219.2 167 67.1
CDE07G1557 Ceratophyllum demersum HOM05D004525 ORTHO05D005295 2.2e-53 213.0 165 65.5
Psat7g073280 Pisum sativum HOM05D004525 ORTHO05D005295 2.8e-53 212.6 163 66.9
BolC7t42467H Brassica oleracea HOM05D001252 ORTHO05D001661 6.3e-53 211.5 172 64.0
TPR.G11962 Trifolium pratense HOM05D004525 ORTHO05D005295 6.3e-53 211.5 185 62.2
Atru.chr3.1913 Acer truncatum HOM05D004525 ORTHO05D005295 9.1e-52 207.6 146 71.2
FAN17G2704 Fragaria x ananassa HOM05D004525 ORTHO05D005295 1.2e-51 207.2 186 61.3
BraA09t39504Z Brassica rapa HOM05D004525 ORTHO05D005295 2.7e-51 206.1 162 64.8
Lj4g0019040 Lotus japonicus HOM05D004525 ORTHO05D005295 1.9e-49 199.9 162 63.6
FAN08G2166 Fragaria x ananassa HOM05D000319 ORTHO05D035382 1.7e-45 186.8 157 60.5
Psat7g072880 Pisum sativum HOM05D004525 ORTHO05D005295 2.8e-45 186.0 155 60.0
Nitab4.5_0017193g0030 Nicotiana tabacum HOM05D004525 ORTHO05D005295 3.7e-45 185.7 159 62.3
Psat7g074000 Pisum sativum HOM05D004525 ORTHO05D005295 4.9e-45 185.3 165 60.0
Peaxi162Scf00640g00032 Petunia axillaris HOM05D004525 ORTHO05D005295 8.3e-45 184.5 132 71.2
C05p24330 Brassica napus HOM05D004525 ORTHO05D005295 5.4e-44 181.8 154 60.4
arahy.Tifrunner.gnm1.ann1.0LH6ZS Arachis hypogaea HOM05D004525 ORTHO05D005295 1.6e-43 180.3 205 52.2
MELO3C013773.2 Cucumis melo HOM05D004525 ORTHO05D005295 3.5e-43 179.1 208 52.4
arahy.Tifrunner.gnm1.ann1.DJD4V2 Arachis hypogaea HOM05D004525 ORTHO05D005295 4.5e-43 178.7 205 51.7
TAR375G0036 Trochodendron aralioides HOM05D004525 ORTHO05D005295 7.3e-41 171.4 104 80.8
Cfa007058 Carpinus fangiana HOM05D004525 ORTHO05D005295 2.1e-40 169.9 129 68.2
AUR62019920 Chenopodium quinoa HOM05D004525 ORTHO05D005295 4.7e-40 168.7 109 72.5
Actinidia27285 Actinidia chinensis HOM05D004525 ORTHO05D005295 6.1e-40 168.3 185 51.4
PGSC0003DMG400039131 Solanum tuberosum HOM05D004525 ORTHO05D005295 3.0e-39 166.0 129 67.4
FvH4_5g19692 Fragaria vesca HOM05D004525 ORTHO05D005295 7.5e-38 161.4 111 70.3
Mapoly0151s0039 Marchantia polymorpha HOM05D004525 ORTHO05D005295 3.7e-37 159.1 156 50.0
Pp3c11_16910 Physcomitrium patens HOM05D004525 ORTHO05D005295 1.6e-35 153.7 160 46.9
PGSC0003DMG400040735 Solanum tuberosum HOM05D004525 ORTHO05D005295 1.6e-35 153.7 130 64.6
PGSC0003DMG400008601 Solanum tuberosum HOM05D004525 ORTHO05D005295 4.6e-35 152.1 132 65.2
PGSC0003DMG400043501 Solanum tuberosum HOM05D004525 ORTHO05D005295 4.6e-35 152.1 130 63.1
CAN.G6.3 Capsicum annuum HOM05D004525 ORTHO05D005295 1.1e-33 147.5 82 85.4
PGSC0003DMG400017120 Solanum tuberosum HOM05D004525 ORTHO05D005295 1.1e-33 147.5 132 65.2
SMO301G0053 Selaginella moellendorffii HOM05D004525 ORTHO05D005295 5.6e-33 145.2 157 49.0
SEGI_32557 Sequoiadendron giganteum HOM05D004525 ORTHO05D005295 1.1e-31 141.0 121 58.7
AagrBONN_evm.TU.Sc2ySwM_117.1849 Anthoceros agrestis HOM05D004525 ORTHO05D005295 2.3e-31 139.8 158 44.9
BcaC05g26400 Brassica carinata HOM05D004525 ORTHO05D005295 3.1e-31 139.4 93 67.7
AagrBONN_evm.TU.Sc2ySwM_368.381 Anthoceros agrestis HOM05D004525 ORTHO05D005295 4.0e-31 139.0 154 44.8
A09p40080 Brassica napus HOM05D004525 ORTHO05D005295 5.8e-30 135.2 118 59.3
Nitab4.5_0002724g0080 Nicotiana tabacum HOM05D004525 ORTHO05D005295 5.8e-30 135.2 113 64.6
RcHm_v2.0_Chr7g0187021 Rosa chinensis HOM05D004525 ORTHO05D005295 1.4e-20 104.0 182 40.7
CAN.G1631.10 Capsicum annuum HOM05D004525 ORTHO05D005295 3.9e-18 95.9 86 62.8
SGA_v2.0_scaffold104G30259 Striga asiatica HOM05D004525 ORTHO05D005295 6.2e-16 88.6 196 39.3
RcHm_v2.0_Chr5g0055281 Rosa chinensis HOM05D004525 ORTHO05D005295 1.4e-15 87.4 58 69.0
TAR374G0495 Trochodendron aralioides HOM05D004525 ORTHO05D005295 9.2e-12 74.7 104 51.0
BcaB05g21931 Brassica carinata HOM05D004525 ORTHO05D005295 1.2e-08 64.3 73 56.2


User provided reference genes

Program Settings