Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Migut.E00624 Erythranthe guttata HOM05D004623 ORTHO05D005100 4.5e-164 581.6 402 100.0
Migut.E00632 Erythranthe guttata HOM05D004623 ORTHO05D005100 1.4e-160 570.1 401 96.5
MSTRG.13716 Avicennia marina HOM05D004623 ORTHO05D005100 1.0e-131 474.2 401 81.5
SalBow1G2042 Salvia bowleyana HOM05D004623 ORTHO05D005100 2.6e-127 459.5 406 82.0
SGA_v2.0_scaffold127G33962 Striga asiatica HOM05D004623 ORTHO05D005100 1.3e-123 447.2 403 78.9
unitig_62.g23647 Utricularia gibba HOM05D004623 ORTHO05D005100 1.8e-104 383.6 363 78.0
Dinv12926 Davidia involucrata HOM05D004623 ORTHO05D005100 3.5e-100 369.4 311 82.3
Cc08_g16710 Coffea canephora HOM05D004623 ORTHO05D005100 1.0e-99 367.9 294 80.6
Sopen08g031290 Solanum pennellii HOM05D004623 ORTHO05D005100 3.0e-99 366.3 316 82.0
Solyc08g083070.3 Solanum lycopersicum HOM05D004623 ORTHO05D005100 8.7e-99 364.8 316 81.6
CAN.G567.85 Capsicum annuum HOM05D004623 ORTHO05D005100 4.3e-98 362.5 367 73.6
Nitab4.5_0007063g0040 Nicotiana tabacum HOM05D004623 ORTHO05D005100 7.4e-98 361.7 362 75.7
RcHm_v2.0_Chr7g0186861 Rosa chinensis HOM05D004623 ORTHO05D005100 1.3e-97 360.9 329 71.4
CANSAT21G1410 Cannabis sativa HOM05D004623 ORTHO05D005100 1.4e-96 357.5 334 74.9
MD14G1126200 Malus domestica HOM05D004623 ORTHO05D005100 5.3e-96 355.5 337 70.0
Dinv16877 Davidia involucrata HOM05D004623 ORTHO05D005100 6.9e-96 355.1 312 73.4
Prupe.5G129200 Prunus persica HOM05D004623 ORTHO05D005100 6.9e-96 355.1 316 72.5
Nitab4.5_0004251g0030 Nicotiana tabacum HOM05D004623 ORTHO05D005100 1.5e-95 354.0 401 69.3
Lj2A157G52 Lonicera japonica HOM05D004623 ORTHO05D005100 3.4e-95 352.8 301 82.1
CSS0032200 Camellia sinensis var. sinensis HOM05D004623 ORTHO05D005100 5.8e-95 352.1 370 71.4
TWI81G0490 Tripterygium wilfordii HOM05D004623 ORTHO05D005100 1.7e-94 350.5 335 77.0
Aqoxy7G00024 Aquilegia oxysepala HOM05D004623 ORTHO05D005100 1.4e-93 347.4 318 79.6
Atru.chr9.1891 Acer truncatum HOM05D004623 ORTHO05D005100 1.9e-93 347.1 303 72.9
ClCG10G000820 Citrullus lanatus HOM05D004623 ORTHO05D005100 1.9e-93 347.1 331 71.0
CiPaw.11G112800 Carya illinoinensis HOM05D004623 ORTHO05D005100 5.5e-93 345.5 408 65.2
Phvul.L005101 Phaseolus vulgaris HOM05D004623 ORTHO05D005100 5.5e-93 345.5 326 75.5
Eucgr.D01683 Eucalyptus grandis HOM05D004623 ORTHO05D005100 9.3e-93 344.7 348 67.5
FAN13G2046 Fragaria x ananassa HOM05D004623 ORTHO05D005100 9.3e-93 344.7 328 75.0
FAN08G2217 Fragaria x ananassa HOM05D004623 ORTHO05D005100 1.2e-92 344.4 320 76.6
PSO063G4918 Papaver somniferum HOM05D004623 ORTHO05D005100 1.2e-92 344.4 339 67.8
FvH4_5g10960 Fragaria vesca HOM05D004623 ORTHO05D005100 1.6e-92 344.0 334 74.9
Thecc.03G221500 Theobroma cacao HOM05D004623 ORTHO05D005100 1.6e-92 344.0 406 70.2
Ciclev10019829m.g Citrus clementina HOM05D004623 ORTHO05D005100 2.1e-92 343.6 298 82.6
Sed0004618 Sechium edule HOM05D004623 ORTHO05D005100 2.1e-92 343.6 368 65.5
CsaV3_3G000890 Cucumis sativus L. HOM05D004623 ORTHO05D005100 2.7e-92 343.2 333 77.8
Manes.02G003100 Manihot esculenta HOM05D004623 ORTHO05D005100 2.7e-92 343.2 372 70.7
VMungo0720G2137 Vigna mungo HOM05D004623 ORTHO05D005100 2.7e-92 343.2 354 65.0
Medtr1g077850 Medicago truncatula HOM05D004623 ORTHO05D005100 3.5e-92 342.8 337 68.5
FAN04G2529 Fragaria x ananassa HOM05D004623 ORTHO05D005100 1.0e-91 341.3 341 59.8
FAN18G3535 Fragaria x ananassa HOM05D004623 ORTHO05D005100 1.0e-91 341.3 333 74.5
Glyma.20G217500 Glycine max HOM05D004623 ORTHO05D005100 1.0e-91 341.3 326 68.4
TPR.G34807 Trifolium pratense HOM05D004623 ORTHO05D005100 1.0e-91 341.3 318 70.8
Lalb_Chr21g0311621 Lupinus albus HOM05D004623 ORTHO05D005100 1.3e-91 340.9 311 70.7
Ca_09948_v3 Cicer arietinum L. HOM05D004623 ORTHO05D005100 1.8e-91 340.5 327 68.8
HanXRQChr03g0086131 Helianthus annuus HOM05D004623 ORTHO05D005100 1.8e-91 340.5 366 71.9
arahy.Tifrunner.gnm1.ann1.6R22RC Arachis hypogaea HOM05D004623 ORTHO05D005100 2.3e-91 340.1 341 67.2
arahy.Tifrunner.gnm1.ann1.CHU5UJ Arachis hypogaea HOM05D004623 ORTHO05D005100 2.3e-91 340.1 341 72.4
Psat6g053240 Pisum sativum HOM05D004623 ORTHO05D005100 5.1e-91 339.0 336 67.0
Haze_09171 Corylus avellana HOM05D004623 ORTHO05D005100 6.7e-91 338.6 330 72.7
CiPaw.12G077700 Carya illinoinensis HOM05D004623 ORTHO05D005100 8.7e-91 338.2 366 67.8
Rhsim02G0251800 Rhododendron simsii HOM05D004623 ORTHO05D005100 8.7e-91 338.2 411 54.0
TWI15G0843 Tripterygium wilfordii HOM05D004623 ORTHO05D005100 8.7e-91 338.2 330 76.4
PGR031G2083 Punica granatum HOM05D004623 ORTHO05D005100 1.1e-90 337.8 328 69.2
Manes.01G051700 Manihot esculenta HOM05D004623 ORTHO05D005100 2.5e-90 336.7 333 76.3
Cfa011928 Carpinus fangiana HOM05D004623 ORTHO05D005100 3.3e-90 336.3 326 75.5
PSO782G3970 Papaver somniferum HOM05D004623 ORTHO05D005100 3.3e-90 336.3 339 67.6
COL.COLO4_10792 Corchorus olitorius HOM05D004623 ORTHO05D005100 1.3e-89 334.3 334 75.1
Hund11352 Selenicereus undatus HOM05D004623 ORTHO05D005100 6.2e-89 332.0 362 67.1
Gohir.A08G110100 Gossypium hirsutum HOM05D004623 ORTHO05D005100 1.8e-88 330.5 334 75.7
Gohir.D08G123000 Gossypium hirsutum HOM05D004623 ORTHO05D005100 4.0e-88 329.3 335 74.9
Gohir.D09G183500 Gossypium hirsutum HOM05D004623 ORTHO05D005100 4.0e-88 329.3 297 80.5
Nn1g00375 Nelumbo nucifera HOM05D004623 ORTHO05D005100 1.2e-87 327.8 351 71.8
TAR375G0778 Trochodendron aralioides HOM05D004623 ORTHO05D005100 1.2e-87 327.8 342 73.1
Duzib205G1161 Durio zibethinus HOM05D004623 ORTHO05D005100 1.5e-87 327.4 348 64.7
AUR62007050 Chenopodium quinoa HOM05D004623 ORTHO05D005100 2.0e-87 327.0 341 64.2
CDE09G0653 Ceratophyllum demersum HOM05D004623 ORTHO05D005100 7.6e-87 325.1 357 62.7
TAR629G1871 Trochodendron aralioides HOM05D004623 ORTHO05D005100 6.5e-86 322.0 357 70.9
Aa31LG9G240 Aethionema arabicum HOM05D004623 ORTHO05D005100 8.4e-86 321.6 302 67.5
Gohir.A09G188600 Gossypium hirsutum HOM05D004623 ORTHO05D005100 8.4e-86 321.6 354 70.1
Gorai.006G205900 Gossypium raimondii HOM05D004623 ORTHO05D005100 8.4e-86 321.6 354 70.1
Actinidia22205 Actinidia chinensis HOM05D004623 ORTHO05D005100 1.1e-85 321.2 302 68.5
Lj5g0020025 Lotus japonicus HOM05D004623 ORTHO05D005100 1.1e-85 321.2 263 75.7
Lsat_1_v5_gn_3_14141 Lactuca sativa HOM05D004623 ORTHO05D005100 4.2e-85 319.3 291 80.1
DCAR_006543 Daucus carota HOM05D004623 ORTHO05D005100 2.1e-84 317.0 344 66.3
Potri.003G146200 Populus trichocarpa HOM05D004623 ORTHO05D005100 6.0e-84 315.5 374 68.4
Gorai.004G129800 Gossypium raimondii HOM05D004623 ORTHO05D005100 1.3e-83 314.3 367 61.6
Hma1.2p1_0456F.1_g156590 Hydrangea macrophylla HOM05D004623 ORTHO05D005100 1.3e-83 314.3 319 67.7
QL02p028195 Quercus lobata HOM05D004623 ORTHO05D005100 1.8e-83 313.9 260 86.2
BcaB06g27683 Brassica carinata HOM05D004623 ORTHO05D005100 5.1e-83 312.4 365 64.7
Oeu013386.1 Olea europaea HOM05D004623 ORTHO05D005100 5.1e-83 312.4 282 80.1
Gohir.D03G085500 Gossypium hirsutum HOM05D004623 ORTHO05D005100 1.1e-82 311.2 343 70.6
Gorai.003G076800 Gossypium raimondii HOM05D004623 ORTHO05D005100 1.1e-82 311.2 343 70.6
AL7G47270 Arabidopsis lyrata HOM05D004623 ORTHO05D005100 1.5e-82 310.8 302 75.8
GSVIVG01019647001 Vitis vinifera HOM05D004623 ORTHO05D005100 1.5e-82 310.8 296 69.9
Sabra03G0106400 Salix brachista HOM05D004623 ORTHO05D005100 2.5e-82 310.1 376 67.0
AT5G41950 Arabidopsis thaliana HOM05D004623 ORTHO05D005100 3.3e-82 309.7 334 69.2
BcaC02g08901 Brassica carinata HOM05D004623 ORTHO05D005100 4.3e-82 309.3 323 71.2
C04p49340 Brassica napus HOM05D003273 ORTHO05D005100 4.3e-82 309.3 323 71.2
BolC4t26520H Brassica oleracea HOM05D004623 ORTHO05D005100 4.3e-82 309.3 323 71.2
Cpa.g.sc175.24 Carica papaya HOM05D004623 ORTHO05D005100 4.3e-82 309.3 381 63.8
Gohir.A02G098100 Gossypium hirsutum HOM05D004623 ORTHO05D005100 4.3e-82 309.3 345 70.1
Zm00001eb043430 Zea mays HOM05D004623 ORTHO05D005100 4.3e-82 309.3 322 66.5
MELO3C013775.2 Cucumis melo HOM05D004623 ORTHO05D005100 7.4e-82 308.5 395 51.4
Sp7g00180 Schrenkiella parvula HOM05D004623 ORTHO05D005100 7.4e-82 308.5 356 66.9
A04p15110 Brassica napus HOM05D003273 ORTHO05D005100 1.3e-81 307.8 323 70.9
BraA04t17152Z Brassica rapa HOM05D003273 ORTHO05D005100 1.3e-81 307.8 323 70.9
Carub.0007s3343 Capsella rubella HOM05D004623 ORTHO05D005100 1.4e-80 304.3 328 69.2
CARHR212610 Cardamine hirsuta HOM05D004623 ORTHO05D005100 1.4e-80 304.3 357 65.3
Thhalv10027708m.g Eutrema salsugineum HOM05D004623 ORTHO05D005100 1.8e-80 303.9 334 68.3
TWI15G1120 Tripterygium wilfordii HOM05D004623 ORTHO05D005100 3.1e-80 303.1 334 56.6
Lj8A201G75 Lonicera japonica HOM05D004623 ORTHO05D005100 9.0e-80 301.6 271 73.4
THA.LOC104823625 Tarenaya hassleriana HOM05D004623 ORTHO05D005100 1.2e-79 301.2 407 60.0
vmacro11504 Vaccinium macrocarpon HOM05D004623 ORTHO05D005100 1.2e-79 301.2 412 49.5
ATR0620G132 Amborella trichopoda HOM05D004623 ORTHO05D005100 2.0e-79 300.4 250 76.4
Zm00001eb220090 Zea mays HOM05D004623 ORTHO05D005100 2.6e-79 300.1 371 59.3
Os03g0113800 Oryza sativa ssp. japonica HOM05D004623 ORTHO05D005100 4.5e-79 299.3 369 60.4
Glyma.10G172800 Glycine max HOM05D004623 ORTHO05D005100 6.5e-78 295.4 336 61.3
HanXRQChr06g0166801 Helianthus annuus HOM05D004623 ORTHO05D005100 5.5e-77 292.4 367 62.4
Lsat_1_v5_gn_6_82240 Lactuca sativa HOM05D004623 ORTHO05D005100 7.2e-77 292.0 422 60.7
ECA240G2146 Erigeron canadensis HOM05D004623 ORTHO05D005100 1.0e-75 288.1 300 74.0
SEGI_26605 Sequoiadendron giganteum HOM05D004623 ORTHO05D005100 8.7e-75 285.0 401 59.6
Lalb_Chr02g0149581 Lupinus albus HOM05D004623 ORTHO05D005100 1.9e-74 283.9 342 67.0
AUR62019914 Chenopodium quinoa HOM05D004623 ORTHO05D005100 9.7e-74 281.6 362 63.8
Sc22g0004710 Simmondsia chinensis HOM05D004623 ORTHO05D005100 9.7e-74 281.6 362 64.1
MD06G1118100 Malus domestica HOM05D004623 ORTHO05D005100 6.3e-73 278.9 224 70.5
Oeu041377.1 Olea europaea HOM05D004623 ORTHO05D005100 4.1e-72 276.2 258 82.2
ECA246G3914 Erigeron canadensis HOM05D004623 ORTHO05D005100 5.3e-72 275.8 273 76.6
Os10g0518300 Oryza sativa ssp. japonica HOM05D004623 ORTHO05D005100 2.7e-68 263.5 343 58.9
Mapoly0068s0096 Marchantia polymorpha HOM05D004623 ORTHO05D005100 2.3e-67 260.4 249 76.3
EL10Ac5g12433 Beta vulgaris HOM05D004623 ORTHO05D005100 3.9e-67 259.6 338 56.8
Duzib068G0531 Durio zibethinus HOM05D004623 ORTHO05D005100 5.7e-66 255.8 335 65.7
HanXRQChr17g0534721 Helianthus annuus HOM05D004623 ORTHO05D005100 5.7e-66 255.8 250 80.0
MBI12_g13717_MAGBIO Magnolia biondii HOM05D004623 ORTHO05D005100 1.0e-62 245.0 228 75.9
Peaxi162Scf00074g00026 Petunia axillaris HOM05D004623 ORTHO05D005100 4.7e-60 236.1 379 47.5
AagrBONN_evm.TU.Sc2ySwM_344.2453 Anthoceros agrestis HOM05D004623 ORTHO05D005100 2.2e-57 227.3 324 58.0
HPP92_007396 Vanilla planifolia HOM05D004623 ORTHO05D005100 2.0e-50 204.1 201 69.7
CBR_g24226 Chara braunii HOM05D004623 ORTHO05D005100 1.6e-47 194.5 284 58.1
Pp3c1_15130 Physcomitrium patens HOM05D004623 ORTHO05D005100 1.6e-44 184.5 370 50.8
SMO134G0154 Selaginella moellendorffii HOM05D004623 ORTHO05D005100 6.3e-41 172.6 148 61.5
HanXRQChr05g0133491 Helianthus annuus HOM05D004623 ORTHO05D005100 5.2e-35 152.9 93 83.9
SEGI_12617 Sequoiadendron giganteum HOM05D004623 ORTHO05D005100 1.3e-33 148.3 95 77.9
BolC6t37215H Brassica oleracea HOM05D004623 ORTHO05D005100 2.7e-31 140.6 110 68.2
Pp3c2_21950 Physcomitrium patens HOM05D004623 ORTHO05D005100 1.2e-26 125.2 241 39.8
TPR.G39353 Trifolium pratense HOM05D004623 ORTHO05D005100 6.2e-20 102.8 56 87.5
MCO14G177 Micromonas commoda HOM05D004623 ORTHO05D005100 7.5e-18 95.9 278 29.1
Actinidia15203 Actinidia chinensis HOM05D004623 ORTHO05D005100 5.0e-14 83.2 71 66.2
Actinidia19830 Actinidia chinensis HOM05D004623 ORTHO05D005100 4.3e-13 80.1 52 76.9
C06p20370 Brassica napus HOM05D004623 ORTHO05D005100 1.6e-12 78.2 50 76.0
MD08G1234800 Malus domestica HOM05D008315 ORTHO05D009452 7.5e-10 69.3 57 63.2
Cre09.g387550 Chlamydomonas reinhardtii HOM05D004623 ORTHO05D005100 1.7e-09 68.2 115 33.9
Lsat_1_v5_gn_1_84960 Lactuca sativa HOM05D004623 ORTHO05D005100 1.1e-08 65.5 68 54.4
Lsat_1_v5_gn_3_125120 Lactuca sativa HOM05D004623 ORTHO05D005100 3.5e-07 60.5 123 35.8
Oeu041376.1 Olea europaea HOM05D004623 ORTHO05D005100 4.6e-07 60.1 149 38.3


User provided reference genes

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