Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Migut.E00525 Erythranthe guttata HOM05D005892 ORTHO05D007364 8.0e-225 783.5 411 100.0
MSTRG.13644 Avicennia marina HOM05D005892 ORTHO05D007364 3.8e-182 641.7 394 84.5
SalBow2G2452 Salvia bowleyana HOM05D005892 ORTHO05D007364 4.5e-175 618.2 438 76.5
SGA_v2.0_scaffold65G22109 Striga asiatica HOM05D005892 ORTHO05D007364 4.3e-162 575.1 393 75.3
Lj3A860G48 Lonicera japonica HOM05D005892 ORTHO05D007364 1.8e-144 516.5 399 68.7
Cc11_g05910 Coffea canephora HOM05D005892 ORTHO05D007364 3.1e-144 515.8 410 65.9
Cfa020027 Carpinus fangiana HOM05D005892 ORTHO05D007364 2.2e-142 509.6 403 67.0
Peaxi162Scf01139g00002 Petunia axillaris HOM05D005892 ORTHO05D007364 1.1e-141 507.3 396 68.7
Nitab4.5_0005476g0010 Nicotiana tabacum HOM05D005892 ORTHO05D007364 4.2e-141 505.4 395 67.6
Nitab4.5_0007165g0010 Nicotiana tabacum HOM05D005892 ORTHO05D007364 1.6e-140 503.4 396 67.2
CSS0032108 Camellia sinensis var. sinensis HOM05D005892 ORTHO05D007364 1.4e-139 500.4 397 66.0
Ciclev10011749m.g Citrus clementina HOM05D005892 ORTHO05D007364 1.1e-138 497.3 401 67.1
Manes.08G033200 Manihot esculenta HOM05D005892 ORTHO05D007364 1.1e-138 497.3 400 67.5
TAR633G2239 Trochodendron aralioides HOM05D005892 ORTHO05D007364 4.8e-137 491.9 405 64.4
GSVIVG01029940001 Vitis vinifera HOM05D005892 ORTHO05D007364 1.1e-136 490.7 404 64.9
Hma1.2p1_1525F.1_g288970 Hydrangea macrophylla HOM05D005892 ORTHO05D007364 9.1e-136 487.6 369 69.9
Potri.016G070700 Populus trichocarpa HOM05D005892 ORTHO05D007364 1.2e-135 487.3 400 65.0
Prupe.7G094800 Prunus persica HOM05D005892 ORTHO05D007364 1.2e-135 487.3 399 66.4
CiPaw.10G017200 Carya illinoinensis HOM05D005892 ORTHO05D007364 7.7e-135 484.6 401 64.3
Atru.chr8.1369 Acer truncatum HOM05D005892 ORTHO05D007364 1.0e-134 484.2 407 64.9
PGSC0003DMG400006864 Solanum tuberosum HOM05D005892 ORTHO05D007364 1.7e-134 483.4 396 65.2
Gorai.002G235400 Gossypium raimondii HOM05D005892 ORTHO05D007364 8.5e-134 481.1 404 64.4
RcHm_v2.0_Chr3g0475881 Rosa chinensis HOM05D005892 ORTHO05D007364 3.2e-133 479.2 402 64.9
Gohir.A01G201600 Gossypium hirsutum HOM05D005892 ORTHO05D007364 4.2e-133 478.8 402 64.2
Sopen01g034280 Solanum pennellii HOM05D005892 ORTHO05D007364 5.5e-133 478.4 396 64.1
Gohir.D01G191500 Gossypium hirsutum HOM05D005892 ORTHO05D007364 2.7e-132 476.1 402 63.7
DCAR_026818 Daucus carota HOM05D005892 ORTHO05D007364 3.6e-132 475.7 398 64.3
Solyc01g087230.3 Solanum lycopersicum HOM05D005892 ORTHO05D007364 4.7e-132 475.3 396 63.6
COL.COLO4_29579 Corchorus olitorius HOM05D005892 ORTHO05D007364 6.1e-132 474.9 406 63.8
Thecc.05G104100 Theobroma cacao HOM05D005892 ORTHO05D007364 6.1e-132 474.9 401 63.1
FAN05G3301 Fragaria x ananassa HOM05D005892 ORTHO05D007364 8.0e-132 474.6 399 64.9
FAN14G3222 Fragaria x ananassa HOM05D005892 ORTHO05D007364 8.0e-132 474.6 399 64.9
Duzib093G2092 Durio zibethinus HOM05D005892 ORTHO05D007364 1.0e-131 474.2 400 63.0
Cpa.g.sc35.59 Carica papaya HOM05D005892 ORTHO05D007364 4.0e-131 472.2 418 61.2
PGR142G3547 Punica granatum HOM05D005892 ORTHO05D007364 2.0e-130 469.9 400 62.0
QL07p036776 Quercus lobata HOM05D005892 ORTHO05D007364 4.4e-130 468.8 459 57.7
MD14G1038600 Malus domestica HOM05D005892 ORTHO05D007364 1.3e-129 467.2 398 64.6
Sabra16G0070800 Salix brachista HOM05D005892 ORTHO05D007364 2.4e-128 463.0 450 57.6
PSO339G5192 Papaver somniferum HOM05D005892 ORTHO05D007364 3.1e-128 462.6 404 61.6
PSO384G1009 Papaver somniferum HOM05D005892 ORTHO05D007364 9.1e-128 461.1 405 61.2
HanXRQChr16g0527301 Helianthus annuus HOM05D005892 ORTHO05D007364 2.6e-127 459.5 391 60.9
Eucgr.K02619 Eucalyptus grandis HOM05D005892 ORTHO05D007364 1.1e-125 454.1 408 61.8
Lsat_1_v5_gn_4_22820 Lactuca sativa HOM05D005892 ORTHO05D007364 1.1e-125 454.1 402 58.7
ClCG10G018360 Citrullus lanatus HOM05D005892 ORTHO05D007364 6.1e-124 448.4 398 62.1
ECA234G1824 Erigeron canadensis HOM05D005892 ORTHO05D007364 6.1e-124 448.4 392 58.9
Sed0021278 Sechium edule HOM05D005892 ORTHO05D007364 1.8e-123 446.8 396 62.6
Os01g0263500 Oryza sativa ssp. japonica HOM05D005892 ORTHO05D007364 3.0e-123 446.0 403 60.8
Rhsim09G0086500 Rhododendron simsii HOM05D005892 ORTHO05D007364 5.2e-123 445.3 398 62.1
Glyma.19G026300 Glycine max HOM05D005892 ORTHO05D007364 1.2e-122 444.1 399 59.6
THA.LOC104816617 Tarenaya hassleriana HOM05D005892 ORTHO05D007364 1.5e-122 443.7 396 61.1
CARHR083520 Cardamine hirsuta HOM05D005892 ORTHO05D007364 9.8e-122 441.0 397 60.2
Ca_25808_v3 Cicer arietinum L. HOM05D005892 ORTHO05D007364 9.8e-122 441.0 396 58.8
Zm00001eb156320 Zea mays HOM05D005892 ORTHO05D007364 2.2e-121 439.9 402 60.4
C03p43860 Brassica napus HOM05D005892 ORTHO05D007364 2.8e-121 439.5 397 60.2
CAN.G219.4 Capsicum annuum HOM05D005892 ORTHO05D007364 2.8e-121 439.5 351 66.1
BolC5t34536H Brassica oleracea HOM05D005892 ORTHO05D007364 3.7e-121 439.1 397 60.7
Glyma.03G201900 Glycine max HOM05D005892 ORTHO05D007364 3.7e-121 439.1 399 59.1
AL3G20290 Arabidopsis lyrata HOM05D005892 ORTHO05D007364 4.8e-121 438.7 395 59.2
BcaC01g06891 Brassica carinata HOM05D005892 ORTHO05D007364 4.8e-121 438.7 397 60.2
BraA05t22764Z Brassica rapa HOM05D005892 ORTHO05D007364 8.3e-121 438.0 397 60.5
CDE02G2672 Ceratophyllum demersum HOM05D005892 ORTHO05D007364 8.3e-121 438.0 402 57.7
Actinidia12433 Actinidia chinensis HOM05D005892 ORTHO05D007364 1.1e-120 437.6 341 68.3
C05p58840 Brassica napus HOM05D005892 ORTHO05D007364 1.1e-120 437.6 397 60.5
BraA03t12793Z Brassica rapa HOM05D005892 ORTHO05D007364 1.4e-120 437.2 396 59.8
BolC3t16654H Brassica oleracea HOM05D005892 ORTHO05D007364 1.8e-120 436.8 397 59.9
A05p39800 Brassica napus HOM05D005892 ORTHO05D007364 3.1e-120 436.0 397 60.5
arahy.Tifrunner.gnm1.ann1.EHSJ8W Arachis hypogaea HOM05D005892 ORTHO05D007364 7.0e-120 434.9 397 56.9
Lj1g0008745 Lotus japonicus HOM05D005892 ORTHO05D007364 2.7e-119 433.0 399 57.9
Medtr7g106200 Medicago truncatula HOM05D005892 ORTHO05D007364 3.5e-119 432.6 414 55.8
Hma1.2p1_1525F.1_g288980 Hydrangea macrophylla HOM05D005892 ORTHO05D007364 4.5e-119 432.2 326 69.0
Sp3g07480 Schrenkiella parvula HOM05D005892 ORTHO05D007364 4.5e-119 432.2 397 58.7
Thhalv10020833m.g Eutrema salsugineum HOM05D005892 ORTHO05D007364 5.9e-119 431.8 397 58.4
Lalb_Chr20g0111381 Lupinus albus HOM05D005892 ORTHO05D007364 7.7e-119 431.4 400 55.5
Phvul.001G195400 Phaseolus vulgaris HOM05D005892 ORTHO05D007364 1.3e-118 430.6 394 58.4
unitig_52.g17290 Utricularia gibba HOM05D005892 ORTHO05D007364 6.5e-118 428.3 319 69.3
Ah.10g030320 Amaranthus hybridus HOM05D005892 ORTHO05D007364 1.9e-117 426.8 401 57.9
A03p36220 Brassica napus HOM05D005892 ORTHO05D007364 7.2e-117 424.9 396 58.8
FvH4_6g20290 Fragaria vesca HOM05D005892 ORTHO05D007364 4.7e-116 422.2 340 68.2
Carub.0003s0830 Capsella rubella HOM05D005892 ORTHO05D007364 6.1e-116 421.8 395 58.0
AUR62036522 Chenopodium quinoa HOM05D005892 ORTHO05D007364 8.0e-116 421.4 410 55.9
HPP92_001371 Vanilla planifolia HOM05D005892 ORTHO05D007364 1.4e-115 420.6 407 57.7
Aqoxy1G00010 Aquilegia oxysepala HOM05D005892 ORTHO05D007364 1.8e-115 420.2 432 55.1
EL10Ac9g21147 Beta vulgaris HOM05D005892 ORTHO05D007364 4.0e-115 419.1 418 55.0
Psat3g029200 Pisum sativum HOM05D005892 ORTHO05D007364 6.8e-115 418.3 396 55.3
Haze_20187 Corylus avellana HOM05D005892 ORTHO05D007364 1.5e-114 417.2 422 58.5
AUR62042262 Chenopodium quinoa HOM05D005892 ORTHO05D007364 2.0e-114 416.8 387 57.1
Nn2g14624 Nelumbo nucifera HOM05D005892 ORTHO05D007364 5.7e-114 415.2 343 65.0
HPP92_001347 Vanilla planifolia HOM05D005892 ORTHO05D007364 9.1e-112 407.9 375 60.0
CsaV3_3G037930 Cucumis sativus L. HOM05D005892 ORTHO05D007364 1.5e-109 400.6 339 64.3
AT3G09180 Arabidopsis thaliana HOM05D005892 ORTHO05D007364 1.0e-107 394.4 335 62.4
HPP92_001441 Vanilla planifolia HOM05D005892 ORTHO05D007364 1.4e-107 394.0 407 55.3
FAN09G4751 Fragaria x ananassa HOM05D005892 ORTHO05D007364 2.3e-107 393.3 326 67.8
Sabra16G0073000 Salix brachista HOM05D005892 ORTHO05D007364 3.0e-107 392.9 417 55.6
Hund10710 Selenicereus undatus HOM05D005892 ORTHO05D007364 1.1e-104 384.4 321 63.6
MELO3C009537.2 Cucumis melo HOM05D005892 ORTHO05D007364 1.2e-103 380.9 389 56.6
MBI19_g09306_MAGBIO Magnolia biondii HOM05D005892 ORTHO05D007364 1.2e-103 380.9 406 54.7
CDE04G0639 Ceratophyllum demersum HOM05D005892 ORTHO05D007364 5.9e-103 378.6 401 54.1
Aa31LG3G1670 Aethionema arabicum HOM05D005892 ORTHO05D007364 6.6e-102 375.2 320 61.6
VMungo1383G1945 Vigna mungo HOM05D005892 ORTHO05D007364 6.4e-97 358.6 333 58.6
ATR0068G118 Amborella trichopoda HOM05D005892 ORTHO05D007364 1.9e-96 357.1 452 48.7
Zm00001eb348930 Zea mays HOM05D005892 ORTHO05D007364 8.6e-94 348.2 345 57.4
FAN05G1366 Fragaria x ananassa HOM05D005892 ORTHO05D007364 4.3e-93 345.9 373 58.2
TAR633G0738 Trochodendron aralioides HOM05D005892 ORTHO05D007364 9.5e-93 344.7 286 66.4
arahy.Tifrunner.gnm1.ann1.PAXQ04 Arachis hypogaea HOM05D005892 ORTHO05D007364 2.1e-92 343.6 301 60.1
FAN05G3684 Fragaria x ananassa HOM05D005892 ORTHO05D007364 8.9e-91 338.2 283 68.6
FAN05G0385 Fragaria x ananassa HOM05D005892 ORTHO05D007364 4.9e-89 332.4 280 67.9
TPR.G14083 Trifolium pratense HOM05D005892 ORTHO05D007364 1.4e-88 330.9 331 55.3
Sc07g0007600 Simmondsia chinensis HOM05D005892 ORTHO05D007364 2.5e-85 320.1 285 62.5
FAN02G1987 Fragaria x ananassa HOM05D005892 ORTHO05D007364 1.3e-78 297.7 370 50.3
BcaB04g18552 Brassica carinata HOM05D005892 ORTHO05D007364 1.1e-64 251.5 239 58.2
Peaxi162Scf00684g00585 Petunia axillaris HOM05D005892 ORTHO05D007364 1.3e-60 238.0 318 45.6
Pp3c15_4850 Physcomitrium patens HOM05D005892 ORTHO05D007364 2.8e-60 236.9 404 38.6
Mapoly0090s0009 Marchantia polymorpha HOM05D005892 ORTHO05D007364 4.8e-60 236.1 400 38.2
RcHm_v2.0_Chr1g0331121 Rosa chinensis HOM05D005892 ORTHO05D007364 4.8e-60 236.1 216 57.4
RcHm_v2.0_Chr1g0331111 Rosa chinensis HOM05D005892 ORTHO05D007364 3.8e-49 199.9 128 80.5
AagrBONN_evm.TU.Sc2ySwM_228.2745 Anthoceros agrestis HOM05D005892 ORTHO05D007364 1.2e-47 194.9 401 34.4
Nn2g14691 Nelumbo nucifera HOM05D005892 ORTHO05D007364 1.0e-46 191.8 127 81.1
Atru.chr9.699 Acer truncatum HOM05D005892 ORTHO05D007364 1.0e-41 175.3 124 73.4
Aa31sc80G50 Aethionema arabicum HOM05D005892 ORTHO05D007364 6.1e-23 112.8 89 65.2
BcaC05g29638 Brassica carinata HOM05D005892 ORTHO05D007364 1.8e-22 111.3 91 63.7
Atru.chr9.700 Acer truncatum HOM05D005892 ORTHO05D007364 4.8e-20 103.2 105 57.1
SEGI_21584 Sequoiadendron giganteum HOM05D005892 ORTHO05D007364 3.5e-18 97.1 113 40.7
TPR.G35563 Trifolium pratense HOM05D005892 ORTHO05D007364 1.0e-17 95.5 105 48.6
CSS0000115 Camellia sinensis var. sinensis HOM05D005892 ORTHO05D007364 1.2e-15 88.6 81 60.5
Hma1.2p1_1525F.1_g288960 Hydrangea macrophylla HOM05D005892 ORTHO05D007364 2.7e-15 87.4 73 64.4
HPP92_019993 Vanilla planifolia HOM05D002096 ORTHO05D002203 2.7e-15 87.4 152 40.8
CBR_g10855 Chara braunii HOM05D005892 ORTHO05D007364 7.7e-10 69.3 149 34.2
SEGI_07863 Sequoiadendron giganteum HOM05D005892 ORTHO05D007364 1.2e-07 62.0 86 43.0


User provided reference genes

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