Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Migut.E00415 Erythranthe guttata HOM05D004656 ORTHO05D005404 0.0e+00 1543.9 778 100.0
SalBow7G0840 Salvia bowleyana HOM05D004656 ORTHO05D005404 0.0e+00 1285.4 778 83.2
SalBow7G0885 Salvia bowleyana HOM05D004656 ORTHO05D005404 0.0e+00 1282.7 778 83.0
SGA_v2.0_scaffold92G28242 Striga asiatica HOM05D004656 ORTHO05D005404 0.0e+00 1148.7 783 74.6
Dinv39815 Davidia involucrata HOM05D004656 ORTHO05D005404 0.0e+00 1132.5 778 71.7
Sopen02g023860 Solanum pennellii HOM05D004656 ORTHO05D005404 0.0e+00 1092.8 779 71.1
QL03p053091 Quercus lobata HOM05D004656 ORTHO05D005404 0.0e+00 1092.4 777 69.2
QL05p081970 Quercus lobata HOM05D004656 ORTHO05D005404 0.0e+00 1092.4 777 69.2
Solyc02g079050.3 Solanum lycopersicum HOM05D004656 ORTHO05D005404 0.0e+00 1090.5 779 71.0
Oeu053939.3 Olea europaea HOM05D004656 ORTHO05D005404 0.0e+00 1090.1 778 70.8
CiPaw.09G158300 Carya illinoinensis HOM05D004656 ORTHO05D005404 0.0e+00 1083.2 778 68.8
GSVIVG01003206001 Vitis vinifera HOM05D004656 ORTHO05D005404 0.0e+00 1081.2 779 68.8
Atru.chr10.2003 Acer truncatum HOM05D004656 ORTHO05D005404 5.3e-312 1073.9 779 68.4
CAN.G1181.24 Capsicum annuum HOM05D004656 ORTHO05D005404 1.6e-311 1072.4 779 70.3
Thecc.06G198700 Theobroma cacao HOM05D004656 ORTHO05D005404 1.6e-311 1072.4 778 68.3
RcHm_v2.0_Chr5g0006531 Rosa chinensis HOM05D004656 ORTHO05D005404 2.7e-311 1071.6 777 69.0
vmacro03819 Vaccinium macrocarpon HOM05D004656 ORTHO05D005404 6.9e-310 1067.0 869 63.3
MD10G1303000 Malus domestica HOM05D004656 ORTHO05D005404 2.0e-309 1065.4 779 67.9
Prupe.4G036500 Prunus persica HOM05D004656 ORTHO05D005404 5.8e-309 1063.9 779 68.7
Gorai.011G022700 Gossypium raimondii HOM05D004656 ORTHO05D005404 1.7e-308 1062.4 779 67.9
Medtr4g090990 Medicago truncatula HOM05D004656 ORTHO05D005404 1.7e-308 1062.4 779 66.5
Duzib160G0757 Durio zibethinus HOM05D004656 ORTHO05D005404 8.4e-308 1060.1 796 66.7
COL.COLO4_31575 Corchorus olitorius HOM05D004656 ORTHO05D005404 2.4e-307 1058.5 778 68.0
DCAR_004136 Daucus carota HOM05D004656 ORTHO05D005404 3.2e-307 1058.1 776 67.8
Gohir.A10G020800 Gossypium hirsutum HOM05D004656 ORTHO05D005404 5.4e-307 1057.4 778 68.0
TWI38G2153 Tripterygium wilfordii HOM05D004656 ORTHO05D005404 9.3e-307 1056.6 776 67.9
Lj4g0008048 Lotus japonicus HOM05D004656 ORTHO05D005404 2.1e-306 1055.4 780 67.3
Gohir.D10G021600 Gossypium hirsutum HOM05D004656 ORTHO05D005404 4.6e-306 1054.3 789 67.3
CSS0039613 Camellia sinensis var. sinensis HOM05D004656 ORTHO05D005404 2.3e-305 1052.0 779 68.5
FvH4_3g04050 Fragaria vesca HOM05D004656 ORTHO05D005404 3.0e-305 1051.6 779 67.4
FAN11G0019 Fragaria x ananassa HOM05D004656 ORTHO05D005404 3.9e-305 1051.2 783 67.3
Lalb_Chr05g0218181 Lupinus albus HOM05D004656 ORTHO05D005404 1.1e-304 1049.7 781 65.9
Glyma.07G190600 Glycine max HOM05D004656 ORTHO05D005404 4.3e-304 1047.7 779 66.8
Cc02_g12490 Coffea canephora HOM05D004656 ORTHO05D005404 4.8e-303 1044.3 779 67.1
TPR.G32417 Trifolium pratense HOM05D004656 ORTHO05D005404 2.0e-301 1038.9 790 65.1
Potri.004G034900 Populus trichocarpa HOM05D004656 ORTHO05D005404 2.6e-301 1038.5 781 66.8
Nitab4.5_0003574g0090 Nicotiana tabacum HOM05D004656 ORTHO05D005404 6.4e-300 1033.9 778 68.8
CANSAT56G3558 Cannabis sativa HOM05D004656 ORTHO05D005404 1.1e-299 1033.1 778 65.7
Ciclev10014364m.g Citrus clementina HOM05D004656 ORTHO05D005404 1.2e-298 1029.6 779 66.5
Nitab4.5_0000190g0180 Nicotiana tabacum HOM05D004656 ORTHO05D005404 2.7e-298 1028.5 839 64.7
Psat7g109640 Pisum sativum HOM05D004656 ORTHO05D005404 2.7e-298 1028.5 779 65.6
arahy.Tifrunner.gnm1.ann1.N579TE Arachis hypogaea HOM05D004656 ORTHO05D005404 7.9e-298 1026.9 779 64.3
Cpa.g.sc27.117 Carica papaya HOM05D004656 ORTHO05D005404 1.0e-297 1026.5 774 67.2
Peaxi162Scf00588g01013 Petunia axillaris HOM05D004656 ORTHO05D005404 6.7e-297 1023.8 780 67.7
Cfa000358 Carpinus fangiana HOM05D004656 ORTHO05D005404 1.9e-296 1022.3 778 65.6
FAN16G1451 Fragaria x ananassa HOM05D004656 ORTHO05D005404 7.4e-296 1020.4 779 66.5
arahy.Tifrunner.gnm1.ann1.9GFP5H Arachis hypogaea HOM05D004656 ORTHO05D005404 2.2e-292 1008.8 804 62.4
Sed0019970 Sechium edule HOM05D004656 ORTHO05D005404 1.9e-291 1005.7 778 64.0
Nn2g12691 Nelumbo nucifera HOM05D004656 ORTHO05D005404 2.5e-291 1005.4 778 64.5
PSO063G3544 Papaver somniferum HOM05D004656 ORTHO05D005404 6.7e-289 997.3 781 64.9
FAN25G3623 Fragaria x ananassa HOM05D004656 ORTHO05D005404 3.3e-288 995.0 881 59.1
VMungo0251G3002 Vigna mungo HOM05D004656 ORTHO05D005404 2.1e-287 992.3 779 63.8
Phvul.002G222500 Phaseolus vulgaris HOM05D004656 ORTHO05D005404 1.4e-286 989.6 779 62.9
HanXRQChr17g0551051 Helianthus annuus HOM05D004656 ORTHO05D005404 4.1e-286 988.0 779 64.1
Sabra04G0020600 Salix brachista HOM05D004656 ORTHO05D005404 1.5e-285 986.1 752 66.4
Aqoxy7G03085 Aquilegia oxysepala HOM05D004656 ORTHO05D005404 3.8e-284 981.5 778 64.5
ECA234G0402 Erigeron canadensis HOM05D004656 ORTHO05D005404 6.5e-284 980.7 785 63.9
THA.LOC104812734 Tarenaya hassleriana HOM05D004656 ORTHO05D005404 3.9e-281 971.5 777 61.9
Lsat_1_v5_gn_4_57080 Lactuca sativa HOM05D004656 ORTHO05D005404 1.9e-280 969.1 781 63.6
PSO782G2217 Papaver somniferum HOM05D004656 ORTHO05D005404 2.5e-280 968.8 781 63.8
AT4G21530 Arabidopsis thaliana HOM05D004656 ORTHO05D005404 3.3e-280 968.4 782 61.8
AL7G32500 Arabidopsis lyrata HOM05D004656 ORTHO05D005404 2.4e-278 962.2 777 61.9
Carub.0007s1989 Capsella rubella HOM05D004656 ORTHO05D005404 3.4e-277 958.4 777 61.5
BraA01t01228Z Brassica rapa HOM05D004656 ORTHO05D005404 1.3e-276 956.4 783 61.0
Thhalv10024471m.g Eutrema salsugineum HOM05D004656 ORTHO05D005404 3.8e-276 954.9 782 61.5
BolC1t01500H Brassica oleracea HOM05D004656 ORTHO05D005404 1.1e-275 953.4 778 61.1
C01p15460 Brassica napus HOM05D004656 ORTHO05D005404 4.2e-275 951.4 787 60.4
ClCG01G022700 Citrullus lanatus HOM05D004656 ORTHO05D005404 4.2e-275 951.4 778 61.7
A01p12840 Brassica napus HOM05D004656 ORTHO05D005404 5.5e-275 951.0 778 60.8
MELO3C025319.2 Cucumis melo HOM05D004656 ORTHO05D005404 9.4e-275 950.3 778 61.6
PGR042G3654 Punica granatum HOM05D004656 ORTHO05D005404 4.6e-274 948.0 777 62.9
Aa31LG6G3550 Aethionema arabicum HOM05D004656 ORTHO05D005404 6.1e-274 947.6 779 61.0
AUR62016904 Chenopodium quinoa HOM05D004656 ORTHO05D005404 1.8e-273 946.0 777 60.9
Sp7g19640 Schrenkiella parvula HOM05D004656 ORTHO05D005404 1.1e-272 943.3 777 60.4
CsaV3_1G030810 Cucumis sativus L. HOM05D004656 ORTHO05D005404 1.5e-272 943.0 778 61.3
CARHR228190 Cardamine hirsuta HOM05D004656 ORTHO05D005404 2.6e-272 942.2 777 60.1
Sc17g0006590 Simmondsia chinensis HOM05D004656 ORTHO05D005404 5.7e-272 941.0 772 60.4
BcaNung02789 Brassica carinata HOM05D004656 ORTHO05D005404 3.6e-266 921.8 799 58.7
MBI16_g41806_MAGBIO Magnolia biondii HOM05D004656 ORTHO05D005404 7.9e-266 920.6 881 55.7
Lj2A281G21 Lonicera japonica HOM05D004656 ORTHO05D005404 3.0e-265 918.7 772 61.9
Manes.15G100000 Manihot esculenta HOM05D004656 ORTHO05D005404 9.7e-264 913.7 741 63.0
Haze_06568 Corylus avellana HOM05D004656 ORTHO05D005404 1.2e-258 896.7 723 62.9
AUR62014723 Chenopodium quinoa HOM05D004656 ORTHO05D005404 3.6e-258 895.2 746 60.1
ATR0580G317 Amborella trichopoda HOM05D004656 ORTHO05D005404 8.6e-244 847.4 791 56.6
EL10Ac8g20612 Beta vulgaris HOM05D004656 ORTHO05D005404 1.5e-240 836.6 777 56.5
HPP92_015366 Vanilla planifolia HOM05D004656 ORTHO05D005404 6.3e-239 831.2 791 55.6
Zm00001eb192820 Zea mays HOM05D004656 ORTHO05D005404 2.2e-207 726.5 772 50.0
Ca_18486_v3 Cicer arietinum L. HOM05D004656 ORTHO05D005404 9.6e-203 711.1 540 65.7
GSVIVG01003202001 Vitis vinifera HOM05D004656 ORTHO05D005404 1.7e-199 700.3 552 65.2
BcaNung02790 Brassica carinata HOM05D004656 ORTHO05D005404 2.2e-191 673.3 503 65.4
CDE02G2476 Ceratophyllum demersum HOM05D004656 ORTHO05D005404 4.2e-182 642.5 780 47.7
TAR626G0166 Trochodendron aralioides HOM05D004656 ORTHO05D005404 2.1e-178 630.2 480 66.5
unitig_8.g3352 Utricularia gibba HOM05D004656 ORTHO05D005404 3.7e-178 629.4 514 65.8
Eucgr.E03497 Eucalyptus grandis HOM05D004656 ORTHO05D005404 9.0e-169 598.2 436 65.8
AL7G32520 Arabidopsis lyrata HOM05D004656 ORTHO05D005404 3.4e-168 596.3 596 53.7
Pp3c19_17530 Physcomitrium patens HOM05D004656 ORTHO05D005404 1.5e-160 570.9 802 41.3
Mapoly0038s0098 Marchantia polymorpha HOM05D004656 ORTHO05D005404 2.0e-152 543.9 790 40.9
Hma1.2p1_1241F.1_g269840 Hydrangea macrophylla HOM05D004656 ORTHO05D005404 1.5e-134 484.6 500 55.2
Eucgr.D02667 Eucalyptus grandis HOM05D004656 ORTHO05D005404 3.6e-133 479.9 404 60.9
AagrBONN_evm.TU.Sc2ySwM_117.1500 Anthoceros agrestis HOM05D004656 ORTHO05D005404 9.8e-107 392.1 754 34.6
CBR_g50890 Chara braunii HOM05D004656 ORTHO05D000048 2.1e-104 384.4 580 37.2
BcaC09g51334 Brassica carinata HOM05D004656 ORTHO05D005404 7.1e-97 359.4 446 48.2
Hund23621 Selenicereus undatus HOM05D004656 ORTHO05D005404 2.5e-94 350.9 378 50.5
BcaC09g51339 Brassica carinata HOM05D004656 ORTHO05D005404 7.6e-91 339.3 450 44.2
Eucgr.E03552 Eucalyptus grandis HOM05D004656 ORTHO05D005404 6.0e-80 303.1 256 59.4
unitig_8.g3351 Utricularia gibba HOM05D004656 ORTHO05D005404 1.3e-79 302.0 229 64.2
Ca_18485_v3 Cicer arietinum L. HOM05D004656 ORTHO05D005404 1.7e-79 301.6 191 70.2
arahy.Tifrunner.gnm1.ann1.QWV34J Arachis hypogaea HOM05D004656 ORTHO05D005404 5.1e-79 300.1 265 58.1
BcaC09g51337 Brassica carinata HOM05D004656 ORTHO05D005404 6.6e-79 299.7 382 44.8
Eucgr.C00026 Eucalyptus grandis HOM05D004656 ORTHO05D005404 4.9e-74 283.5 199 71.4
SEGI_33901 Sequoiadendron giganteum HOM05D004656 ORTHO05D005404 4.2e-65 253.8 396 38.9
SMO119G0264 Selaginella moellendorffii HOM05D004656 ORTHO05D005404 6.7e-55 219.9 770 25.8
QL02p031126 Quercus lobata HOM05D004656 ORTHO05D005404 2.2e-45 188.3 175 61.7
RcHm_v2.0_Chr5g0006431 Rosa chinensis HOM05D004656 ORTHO05D005404 3.3e-38 164.5 323 36.2
SGA_v2.0_scaffold159G37668 Striga asiatica HOM05D004656 ORTHO05D005404 1.1e-36 159.5 350 38.9
PRCOL_00000091 Prasinoderma coloniale HOM05D004656 ORTHO05D005404 2.0e-35 155.2 486 25.1
Os02g0785900 Oryza sativa ssp. japonica HOM05D004656 ORTHO05D005404 4.2e-33 147.5 104 63.5
SHI02118 Sapria himalayana HOM05D004656 ORTHO05D005404 7.2e-33 146.7 226 37.2
SEGI_08767 Sequoiadendron giganteum HOM05D004656 ORTHO05D005404 3.6e-32 144.4 164 48.8
Cre12.g556650 Chlamydomonas reinhardtii HOM05D004656 ORTHO05D005404 1.8e-31 142.1 513 24.6
MCO05G135 Micromonas commoda HOM05D004656 ORTHO05D005404 5.2e-31 140.6 508 24.6
SHI02121 Sapria himalayana HOM05D004656 ORTHO05D005404 1.5e-30 139.0 255 36.1
Hund23620 Selenicereus undatus HOM05D004656 ORTHO05D005404 7.4e-30 136.7 86 75.6
CSS0005991 Camellia sinensis var. sinensis HOM05D004656 ORTHO05D005404 3.1e-28 131.3 126 54.0
TAR369G0180 Trochodendron aralioides HOM05D004656 ORTHO05D005404 1.2e-27 129.4 89 67.4
CSS0025603 Camellia sinensis var. sinensis HOM05D004656 ORTHO05D005404 3.5e-27 127.9 93 67.7
EL10Ac6g14063 Beta vulgaris HOM05D004656 ORTHO05D005404 5.9e-27 127.1 90 73.3
EL10Ac9g22460 Beta vulgaris HOM05D004656 ORTHO05D005404 1.7e-26 125.6 88 73.9
CSS0042439 Camellia sinensis var. sinensis HOM05D004656 ORTHO05D005404 3.2e-25 121.3 93 65.6
CSS0038861 Camellia sinensis var. sinensis HOM05D004656 ORTHO05D005404 3.6e-24 117.9 93 64.5
Eucgr.C00045 Eucalyptus grandis HOM05D004656 ORTHO05D005404 1.4e-23 115.9 79 70.9
Hma1.2p1_0144F.1_g064710 Hydrangea macrophylla HOM05D004656 ORTHO05D005404 2.3e-23 115.2 61 83.6
Zm00001eb384090 Zea mays HOM05D004656 ORTHO05D005404 8.8e-23 113.2 110 50.9
Zm00001eb125490 Zea mays HOM05D004656 ORTHO05D005404 2.0e-22 112.1 110 49.1
Zm00001eb374130 Zea mays HOM05D004656 ORTHO05D005404 7.5e-22 110.2 61 78.7
CSS0002071 Camellia sinensis var. sinensis HOM05D004656 ORTHO05D005404 1.3e-21 109.4 83 65.1
Haze_06207 Corylus avellana HOM05D004656 ORTHO05D005404 1.3e-21 109.4 61 80.3
Eucgr.E01958 Eucalyptus grandis HOM05D004656 ORTHO05D005404 3.7e-21 107.8 93 55.9
Hma1.2p1_1241F.1_g269830 Hydrangea macrophylla HOM05D004656 ORTHO05D005404 7.2e-17 93.6 61 70.5
EL10Ac3g05965 Beta vulgaris HOM05D004656 ORTHO05D005404 1.4e-15 89.4 57 78.9
MELO3C032683.2 Cucumis melo HOM05D004656 ORTHO05D005404 5.2e-15 87.4 54 70.4
SHI02114 Sapria himalayana HOM05D004656 ORTHO05D005404 5.2e-15 87.4 78 51.3
CSS0023832 Camellia sinensis var. sinensis HOM05D004656 ORTHO05D005404 7.5e-14 83.6 93 52.7
MELO3C008912.2 Cucumis melo HOM05D004656 ORTHO05D005404 4.8e-13 80.9 77 54.5
CSS0037848 Camellia sinensis var. sinensis HOM05D003145 ORTHO05D003586 3.1e-12 78.2 67 59.7
CSS0033314 Camellia sinensis var. sinensis HOM05D003145 ORTHO05D003586 9.1e-12 76.6 56 67.9
Eucgr.E03557 Eucalyptus grandis HOM05D004656 ORTHO05D005404 1.1e-09 69.7 62 56.5
Eucgr.C00011 Eucalyptus grandis HOM05D004656 ORTHO05D005404 3.3e-09 68.2 55 58.2
Eucgr.E03560 Eucalyptus grandis HOM05D004656 ORTHO05D005404 5.5e-09 67.4 55 58.2
Eucgr.L00388 Eucalyptus grandis HOM05D004656 ORTHO05D005404 1.6e-08 65.9 61 55.7
Zm00001eb266270 Zea mays HOM05D004656 ORTHO05D005404 2.8e-08 65.1 81 42.0
CSS0036547 Camellia sinensis var. sinensis HOM05D004656 ORTHO05D005404 3.6e-08 64.7 93 43.0
Actinidia29288 Actinidia chinensis HOM05D004656 ORTHO05D005404 2.0e-06 58.9 31 80.6
SHI02115 Sapria himalayana HOM05D004656 ORTHO05D005404 2.6e-06 58.5 61 50.8


User provided reference genes

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