Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Migut.E00386 Erythranthe guttata HOM05D005619 ORTHO05D006696 9.3e-104 380.2 188 100.0
MSTRG.870 Avicennia marina HOM05D005619 ORTHO05D006696 2.2e-92 342.4 188 89.4
SalBow8G4625 Salvia bowleyana HOM05D005619 ORTHO05D006696 2.6e-90 335.5 188 87.2
Oeu057772.1 Olea europaea HOM05D005619 ORTHO05D006696 1.3e-89 333.2 187 86.1
SGA_v2.0_scaffold170G38815 Striga asiatica HOM05D005619 ORTHO05D006696 7.2e-88 327.4 188 85.1
unitig_52.g17125 Utricularia gibba HOM05D005619 ORTHO05D006696 3.2e-80 302.0 185 77.8
Lj3A878T24 Lonicera japonica HOM05D005619 ORTHO05D006696 6.7e-78 294.3 186 76.3
Peaxi162Scf00451g00930 Petunia axillaris HOM05D005619 ORTHO05D006696 1.2e-74 283.5 186 73.1
Solyc05g008620.4 Solanum lycopersicum HOM05D005619 ORTHO05D006696 4.5e-74 281.6 186 73.1
Sopen05g004460 Solanum pennellii HOM05D005619 ORTHO05D006696 4.5e-74 281.6 186 73.1
PGSC0003DMG400030566 Solanum tuberosum HOM05D005619 ORTHO05D006696 4.5e-74 281.6 186 73.1
CAN.G1489.22 Capsicum annuum HOM05D005619 ORTHO05D006696 5.9e-74 281.2 186 73.1
Cc03_g10740 Coffea canephora HOM05D005619 ORTHO05D006696 5.0e-73 278.1 186 71.0
Actinidia31994 Actinidia chinensis HOM05D005619 ORTHO05D006696 1.5e-72 276.6 187 71.7
Dinv16155 Davidia involucrata HOM05D005619 ORTHO05D006696 1.9e-72 276.2 186 72.6
DCAR_026757 Daucus carota HOM05D005619 ORTHO05D006696 9.4e-72 273.9 186 71.5
SalBow8G2997 Salvia bowleyana HOM05D005619 ORTHO05D006696 2.1e-71 272.7 204 70.6
Hma1.2p1_2256F.1_g318210 Hydrangea macrophylla HOM05D005619 ORTHO05D006696 2.7e-71 272.3 186 72.6
CSS0006168 Camellia sinensis var. sinensis HOM05D005619 ORTHO05D006696 3.6e-71 271.9 186 71.5
HanXRQChr09g0271791 Helianthus annuus HOM05D005619 ORTHO05D006696 1.1e-67 260.4 186 69.4
ECA233G2873 Erigeron canadensis HOM05D005619 ORTHO05D006696 4.1e-67 258.5 186 68.8
HanXRQChr15g0468911 Helianthus annuus HOM05D005619 ORTHO05D006696 3.5e-66 255.4 186 68.3
Lsat_1_v5_gn_8_41961 Lactuca sativa HOM05D005619 ORTHO05D006696 3.5e-66 255.4 186 67.2
Nitab4.5_0000350g0020 Nicotiana tabacum HOM05D005619 ORTHO05D006696 1.3e-65 253.4 186 69.4
HanXRQChr08g0213181 Helianthus annuus HOM05D005619 ORTHO05D006696 1.7e-65 253.1 186 67.2
ECA247G2146 Erigeron canadensis HOM05D005619 ORTHO05D006696 1.5e-64 250.0 186 66.7
Medtr3g070470 Medicago truncatula HOM05D005619 ORTHO05D006696 1.2e-63 246.9 187 62.0
Hund13861 Selenicereus undatus HOM05D005619 ORTHO05D006696 4.7e-63 245.0 186 63.4
Sc11g0001040 Simmondsia chinensis HOM05D005619 ORTHO05D006696 6.1e-63 244.6 186 63.4
TAR369G0168 Trochodendron aralioides HOM05D005619 ORTHO05D006696 1.8e-62 243.0 186 63.4
GSVIVG01032822001 Vitis vinifera HOM05D005619 ORTHO05D006696 1.8e-62 243.0 187 64.2
Lj6g0025019 Lotus japonicus HOM05D005619 ORTHO05D006696 1.5e-61 240.0 187 62.0
Lj1g0018800 Lotus japonicus HOM05D005619 ORTHO05D006696 1.3e-60 236.9 187 61.0
CANSAT56G2799 Cannabis sativa HOM05D005619 ORTHO05D006696 2.2e-60 236.1 186 62.9
Psat5g128520 Pisum sativum HOM05D005619 ORTHO05D006696 3.7e-60 235.3 186 59.1
TPR.G16245 Trifolium pratense HOM05D005619 ORTHO05D006696 3.7e-60 235.3 193 61.1
Atru.chr12.29 Acer truncatum HOM05D005619 ORTHO05D006696 3.1e-59 232.3 186 62.4
CsaV3_6G001830 Cucumis sativus L. HOM05D005619 ORTHO05D006696 3.1e-59 232.3 187 61.5
MBI05_g05306_MAGBIO Magnolia biondii HOM05D005619 ORTHO05D006696 3.1e-59 232.3 186 60.2
Sed0003089 Sechium edule HOM05D005619 ORTHO05D006696 3.1e-59 232.3 185 61.6
CDE04G2394 Ceratophyllum demersum HOM05D005619 ORTHO05D006696 5.4e-59 231.5 185 61.1
PSO339G2325 Papaver somniferum HOM05D005619 ORTHO05D006696 7.0e-59 231.1 185 60.0
Thecc.10G016900 Theobroma cacao HOM05D005619 ORTHO05D006696 7.0e-59 231.1 186 62.9
arahy.Tifrunner.gnm1.ann1.IDH5I9 Arachis hypogaea HOM05D005619 ORTHO05D006696 9.2e-59 230.7 187 59.4
Nn2g11500 Nelumbo nucifera HOM05D005619 ORTHO05D006696 9.2e-59 230.7 186 61.3
EL10Ac2g04534 Beta vulgaris HOM05D005619 ORTHO05D006696 1.2e-58 230.3 187 59.9
Aqoxy4G02564 Aquilegia oxysepala HOM05D005619 ORTHO05D006696 2.0e-58 229.6 187 59.9
RcHm_v2.0_Chr1g0370121 Rosa chinensis HOM05D005619 ORTHO05D006696 2.0e-58 229.6 187 61.5
arahy.Tifrunner.gnm1.ann1.2YL4XG Arachis hypogaea HOM05D005619 ORTHO05D006696 2.7e-58 229.2 187 58.3
FAN01G2425 Fragaria x ananassa HOM05D005619 ORTHO05D006696 2.7e-58 229.2 187 61.0
FAN10G0566 Fragaria x ananassa HOM05D005619 ORTHO05D006696 2.7e-58 229.2 187 61.0
Aqoxy5G02842 Aquilegia oxysepala HOM05D005619 ORTHO05D006696 4.5e-58 228.4 187 60.4
Cpa.g.sc19.176 Carica papaya HOM05D005619 ORTHO05D006696 4.5e-58 228.4 187 60.4
Cc03_g13530 Coffea canephora HOM05D005619 ORTHO05D006696 4.5e-58 228.4 166 66.9
AUR62034382 Chenopodium quinoa HOM05D005619 ORTHO05D006696 5.9e-58 228.0 187 59.9
FvH4_7g24440 Fragaria vesca HOM05D005619 ORTHO05D006696 5.9e-58 228.0 187 60.4
QL08p063145 Quercus lobata HOM05D005619 ORTHO05D006696 7.8e-58 227.6 187 60.4
MD01G1152600 Malus domestica HOM05D005619 ORTHO05D006696 1.0e-57 227.3 187 59.4
CSS0006460 Camellia sinensis var. sinensis HOM05D005619 ORTHO05D006696 5.0e-57 224.9 170 66.5
Gohir.A06G163800 Gossypium hirsutum HOM05D005619 ORTHO05D006696 5.0e-57 224.9 185 62.7
Gohir.D06G169500 Gossypium hirsutum HOM05D005619 ORTHO05D006696 5.0e-57 224.9 185 62.7
Gorai.010G198200 Gossypium raimondii HOM05D005619 ORTHO05D006696 5.0e-57 224.9 185 62.7
AUR62022323 Chenopodium quinoa HOM05D005619 ORTHO05D006696 6.6e-57 224.6 187 59.4
Duzib114G0170 Durio zibethinus HOM05D005619 ORTHO05D006696 6.6e-57 224.6 185 62.2
Duzib128G1619 Durio zibethinus HOM05D005619 ORTHO05D006696 6.6e-57 224.6 186 61.8
Glyma.11G229600 Glycine max HOM05D005619 ORTHO05D006696 6.6e-57 224.6 185 58.4
Manes.04G157300 Manihot esculenta HOM05D005619 ORTHO05D006696 6.6e-57 224.6 187 62.6
Peaxi162Scf00205g01136 Petunia axillaris HOM05D005619 ORTHO05D006696 1.5e-56 223.4 147 72.8
VMungo1383G0062 Vigna mungo HOM05D005619 ORTHO05D006696 1.9e-56 223.0 184 57.1
Glyma.18G027600 Glycine max HOM05D005619 ORTHO05D006696 2.5e-56 222.6 185 57.8
Potri.010G189200 Populus trichocarpa HOM05D005619 ORTHO05D006696 3.3e-56 222.2 186 62.9
Prupe.2G202300 Prunus persica HOM05D005619 ORTHO05D006696 3.3e-56 222.2 185 58.9
Sabra08G0050000 Salix brachista HOM05D005619 ORTHO05D006696 5.6e-56 221.5 186 62.4
Phvul.001G242800 Phaseolus vulgaris HOM05D005619 ORTHO05D006696 7.3e-56 221.1 187 56.7
Prupe.2G249700 Prunus persica HOM05D005619 ORTHO05D006696 7.3e-56 221.1 185 58.4
HPP92_000422 Vanilla planifolia HOM05D000755 ORTHO05D006696 1.2e-55 220.3 186 58.6
Lalb_Chr03g0027081 Lupinus albus HOM05D005619 ORTHO05D006696 1.6e-55 219.9 187 57.2
Potri.008G068100 Populus trichocarpa HOM05D005619 ORTHO05D006696 1.6e-55 219.9 186 61.3
THA.LOC104824313 Tarenaya hassleriana HOM05D005619 ORTHO05D006696 1.6e-55 219.9 185 60.5
ClCG11G006160 Citrullus lanatus HOM05D005619 ORTHO05D006696 2.8e-55 219.2 185 61.1
HPP92_000355 Vanilla planifolia HOM05D000755 ORTHO05D000642 3.6e-55 218.8 186 58.1
AT1G19080 Arabidopsis thaliana HOM05D005619 ORTHO05D006696 1.4e-54 216.9 185 58.4
AT3G55490 Arabidopsis thaliana HOM05D005619 ORTHO05D006696 1.4e-54 216.9 185 58.4
AL5G36640 Arabidopsis lyrata HOM05D005619 ORTHO05D006696 2.3e-54 216.1 185 57.8
Eucgr.G03057 Eucalyptus grandis HOM05D005619 ORTHO05D006696 3.0e-54 215.7 185 60.0
CiPaw.08G091200 Carya illinoinensis HOM05D005619 ORTHO05D006696 6.8e-54 214.5 187 57.8
Haze_17223 Corylus avellana HOM05D005619 ORTHO05D006696 6.8e-54 214.5 185 58.4
Ciclev10033435m.g Citrus clementina HOM05D005619 ORTHO05D006696 1.2e-53 213.8 171 62.0
Cfa001322 Carpinus fangiana HOM05D005619 ORTHO05D006696 1.5e-53 213.4 185 58.4
COL.COLO4_38547 Corchorus olitorius HOM05D005598 ORTHO05D006587 2.0e-53 213.0 186 59.1
Thhalv10017287m.g Eutrema salsugineum HOM05D005619 ORTHO05D006696 2.0e-53 213.0 185 58.4
DCAR_023625 Daucus carota HOM05D005619 ORTHO05D006696 3.4e-53 212.2 152 65.8
Nitab4.5_0003886g0110 Nicotiana tabacum HOM05D005619 ORTHO05D006696 4.4e-53 211.8 186 60.2
CARHR135030 Cardamine hirsuta HOM05D005619 ORTHO05D006696 9.8e-53 210.7 185 58.4
Os08g0274700 Oryza sativa ssp. japonica HOM05D005619 ORTHO05D006696 2.9e-52 209.1 186 55.9
Carub.0005s2221 Capsella rubella HOM05D005619 ORTHO05D006696 4.9e-52 208.4 185 55.1
BraA04t18498Z Brassica rapa HOM05D005619 ORTHO05D006696 8.3e-52 207.6 188 56.9
CARHR165540 Cardamine hirsuta HOM05D005619 ORTHO05D006696 1.1e-51 207.2 185 56.2
CiPaw.02G192300 Carya illinoinensis HOM05D000781 ORTHO05D000643 1.1e-51 207.2 181 58.0
BcaNung05464 Brassica carinata HOM05D005619 ORTHO05D006696 1.4e-51 206.8 188 56.9
A04p30090 Brassica napus HOM05D005619 ORTHO05D006696 1.8e-51 206.5 185 57.3
PGR142G0483 Punica granatum HOM05D005619 ORTHO05D006696 7.0e-51 204.5 187 56.1
Sp4g22380 Schrenkiella parvula HOM05D005619 ORTHO05D006696 9.2e-51 204.1 185 56.2
Zm00001eb412290 Zea mays HOM05D005619 ORTHO05D006696 9.2e-51 204.1 186 54.3
Lalb_Chr01g0004131 Lupinus albus HOM05D005619 ORTHO05D006696 2.0e-50 203.0 208 51.4
BolC4t28280H Brassica oleracea HOM05D005619 ORTHO05D006696 2.7e-50 202.6 185 56.8
ATR0481G004 Amborella trichopoda HOM05D005619 ORTHO05D006696 7.8e-50 201.1 186 52.2
Zm00001eb198650 Zea mays HOM05D005619 ORTHO05D006696 1.0e-49 200.7 186 54.3
BcaC02g07350 Brassica carinata HOM05D005619 ORTHO05D006696 3.9e-49 198.7 185 56.2
C04p67770 Brassica napus HOM05D005619 ORTHO05D006696 3.9e-49 198.7 185 56.2
SMO356G0622 Selaginella moellendorffii HOM05D005619 ORTHO05D006696 6.6e-49 198.0 187 50.3
TWI53G0619 Tripterygium wilfordii HOM05D005619 ORTHO05D006696 5.6e-48 194.9 168 58.9
COL.COLO4_25718 Corchorus olitorius HOM05D005619 ORTHO05D006696 4.7e-47 191.8 186 55.4
TAR633G2706 Trochodendron aralioides HOM05D005619 ORTHO05D006696 1.4e-46 190.3 150 62.0
Pp3c25_12660 Physcomitrium patens HOM05D005619 ORTHO05D006696 3.1e-46 189.1 184 48.9
BcaC02g07392 Brassica carinata HOM05D005619 ORTHO05D006696 1.1e-43 180.6 171 55.6
Mapoly0053s0030 Marchantia polymorpha HOM05D005619 ORTHO05D006696 2.4e-43 179.5 185 47.0
MELO3C029903.2 Cucumis melo HOM05D005619 ORTHO05D006696 9.2e-43 177.6 199 50.8
Mapoly0034s0059 Marchantia polymorpha HOM05D005619 ORTHO05D006696 2.0e-42 176.4 185 45.4
FAN06G3728 Fragaria x ananassa HOM05D005619 ORTHO05D006696 1.7e-41 173.3 150 56.7
TWI73G0774 Tripterygium wilfordii HOM05D005619 ORTHO05D006696 3.0e-41 172.6 185 50.8
AagrBONN_evm.TU.Sc2ySwM_228.5247 Anthoceros agrestis HOM05D005619 ORTHO05D006696 8.1e-39 164.5 185 46.5
CBR_g38120 Chara braunii HOM05D005619 ORTHO05D006696 2.3e-38 162.9 189 42.3
AagrBONN_evm.TU.Sc2ySwM_344.729 Anthoceros agrestis HOM05D005619 ORTHO05D006696 3.1e-38 162.5 185 44.9
Sabra10G0145900 Salix brachista HOM05D005619 ORTHO05D006696 5.2e-38 161.8 186 50.5
FAN06G2505 Fragaria x ananassa HOM05D005619 ORTHO05D006696 1.5e-32 143.7 150 51.3
C04p07340 Brassica napus HOM05D004515 ORTHO05D006013 2.1e-31 139.8 144 52.8
Actinidia33632 Actinidia chinensis HOM05D005619 ORTHO05D006696 3.2e-27 125.9 101 64.4
Aa31LG5G19540 Aethionema arabicum HOM05D005619 ORTHO05D006696 4.6e-26 122.1 106 59.4
CARHR159370 Cardamine hirsuta HOM05D005619 ORTHO05D006696 1.7e-25 120.2 113 52.2
ATR0568G146 Amborella trichopoda HOM05D005619 ORTHO05D006696 1.6e-23 113.6 118 49.2
BolC4t22357H Brassica oleracea HOM05D004515 ORTHO05D006013 3.8e-20 102.4 156 40.4
AagrBONN_evm.TU.Sc2ySwM_344.737 Anthoceros agrestis HOM05D005619 ORTHO05D006696 3.2e-19 99.4 106 45.3
MCO08G248 Micromonas commoda HOM05D005619 ORTHO05D006696 9.3e-19 97.8 169 32.5
C04p07380 Brassica napus HOM05D005619 ORTHO05D006696 1.5e-16 90.5 124 39.5
HanXRQChr01g0017101 Helianthus annuus HOM05D005619 ORTHO05D006696 2.5e-16 89.7 60 70.0
Cre06.g251750 Chlamydomonas reinhardtii HOM05D005619 ORTHO05D006696 5.6e-16 88.6 188 31.4
HanXRQChr12g0375531 Helianthus annuus HOM05D005619 ORTHO05D006696 2.1e-15 86.7 72 55.6
BcaB08g35316 Brassica carinata HOM05D005619 ORTHO05D006696 6.9e-14 81.6 73 53.4
Thecc.10G017600 Theobroma cacao HOM05D009631 ORTHO05D011824 2.6e-13 79.7 81 53.1
Cfa027228 Carpinus fangiana HOM05D005619 ORTHO05D006696 3.3e-08 62.8 179 26.8


User provided reference genes

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