Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Migut.E00347 Erythranthe guttata HOM05D004123 ORTHO05D004768 7.1e-77 291.2 233 100.0
MSTRG.13535 Avicennia marina HOM05D004123 ORTHO05D004768 4.5e-47 192.2 161 67.7
MSTRG.844 Avicennia marina HOM05D004123 ORTHO05D004768 3.7e-41 172.6 166 62.7
Oeu043592.1 Olea europaea HOM05D004123 ORTHO05D004768 4.5e-39 165.6 162 59.3
Oeu034240.1 Olea europaea HOM05D004123 ORTHO05D004768 1.1e-37 161.0 166 54.8
Rhsim09G0107600 Rhododendron simsii HOM05D004123 ORTHO05D004768 3.2e-37 159.5 160 55.6
unitig_747.g21201 Utricularia gibba HOM05D004123 ORTHO05D004768 5.5e-37 158.7 169 58.6
unitig_8.g3254 Utricularia gibba HOM05D004123 ORTHO05D004768 5.5e-37 158.7 159 57.9
SalBow8G0349 Salvia bowleyana HOM05D004123 ORTHO05D004768 9.3e-37 157.9 157 59.9
unitig_22.g6557 Utricularia gibba HOM05D004123 ORTHO05D004768 6.7e-35 151.8 169 53.3
Aqoxy3G00286 Aquilegia oxysepala HOM05D004123 ORTHO05D004768 1.1e-32 144.4 172 52.3
CsaV3_5G023110 Cucumis sativus L. HOM05D004123 ORTHO05D004768 2.4e-32 143.3 164 55.5
MELO3C003021.2 Cucumis melo HOM05D004123 ORTHO05D004768 3.1e-32 142.9 166 54.8
Prupe.1G311900 Prunus persica HOM05D004123 ORTHO05D004768 3.1e-32 142.9 161 55.9
Thecc.02G229500 Theobroma cacao HOM05D004123 ORTHO05D004768 3.1e-32 142.9 162 52.5
Gohir.A04G098200 Gossypium hirsutum HOM05D004123 ORTHO05D004768 1.2e-31 141.0 162 51.9
Gohir.D04G137875 Gossypium hirsutum HOM05D004123 ORTHO05D004768 1.2e-31 141.0 162 51.9
Gorai.012G122600 Gossypium raimondii HOM05D004123 ORTHO05D004768 1.2e-31 141.0 162 51.9
Nn4g23857 Nelumbo nucifera HOM05D004123 ORTHO05D004768 1.2e-31 141.0 166 53.0
Nn3g17856 Nelumbo nucifera HOM05D004123 ORTHO05D004768 2.6e-31 139.8 164 54.3
Gohir.D02G170500 Gossypium hirsutum HOM05D004123 ORTHO05D004768 3.4e-31 139.4 165 50.9
Gorai.005G191500 Gossypium raimondii HOM05D004123 ORTHO05D004768 3.4e-31 139.4 165 50.9
GSVIVG01011890001 Vitis vinifera HOM05D004123 ORTHO05D004768 4.5e-31 139.0 161 52.2
Sed0009095 Sechium edule HOM05D004123 ORTHO05D004768 7.7e-31 138.3 163 54.0
TAR374G0469 Trochodendron aralioides HOM05D004123 ORTHO05D004768 7.7e-31 138.3 164 53.7
Gohir.A03G147300 Gossypium hirsutum HOM05D004123 ORTHO05D004768 1.3e-30 137.5 165 50.3
Cc11_g10070 Coffea canephora HOM05D004123 ORTHO05D004768 3.8e-30 136.0 161 50.9
TAR629G2125 Trochodendron aralioides HOM05D004946 ORTHO05D006101 1.4e-29 134.0 163 51.5
Duzib268G1624 Durio zibethinus HOM05D004123 ORTHO05D004768 1.9e-29 133.7 162 50.6
QL01p041642 Quercus lobata HOM05D004123 ORTHO05D004768 1.9e-29 133.7 169 51.5
PGR119G1213 Punica granatum HOM05D004123 ORTHO05D004768 2.5e-29 133.3 177 46.3
CiPaw.15G085900 Carya illinoinensis HOM05D004123 ORTHO05D004768 3.2e-29 132.9 170 49.4
Duzib248G0829 Durio zibethinus HOM05D004123 ORTHO05D004768 3.2e-29 132.9 161 49.7
Duzib251G0145 Durio zibethinus HOM05D004123 ORTHO05D004768 3.2e-29 132.9 161 50.3
Potri.008G121200 Populus trichocarpa HOM05D004123 ORTHO05D004768 3.2e-29 132.9 160 50.6
Medtr1g110710 Medicago truncatula HOM05D004123 ORTHO05D004768 5.5e-29 132.1 166 49.4
Manes.14G103000 Manihot esculenta HOM05D004123 ORTHO05D004768 9.4e-29 131.3 161 52.2
PSO063G6205 Papaver somniferum HOM05D004123 ORTHO05D004768 9.4e-29 131.3 167 49.7
Phvul.007G027700 Phaseolus vulgaris HOM05D004123 ORTHO05D004768 9.4e-29 131.3 130 56.9
Lj6C757T7 Lonicera japonica HOM05D004123 ORTHO05D004768 1.2e-28 131.0 163 61.3
Eucgr.G02316 Eucalyptus grandis HOM05D004123 ORTHO05D004768 1.6e-28 130.6 153 52.9
CANSAT01G1980 Cannabis sativa HOM05D004123 ORTHO05D004768 4.7e-28 129.0 164 57.3
Psat6g227440 Pisum sativum HOM05D004123 ORTHO05D004768 6.1e-28 128.6 135 52.6
Ah.03g137600 Amaranthus hybridus HOM05D004123 ORTHO05D004768 1.8e-27 127.1 127 56.7
Manes.06G067400 Manihot esculenta HOM05D004123 ORTHO05D004768 1.8e-27 127.1 113 60.2
CiPaw.16G065300 Carya illinoinensis HOM05D004123 ORTHO05D004768 3.9e-27 125.9 166 51.8
TPR.G18823 Trifolium pratense HOM05D004123 ORTHO05D004768 6.7e-27 125.2 167 47.3
Glyma.10G273800 Glycine max HOM05D004123 ORTHO05D004768 8.8e-27 124.8 130 55.4
Cpa.g.sc350.1 Carica papaya HOM05D004123 ORTHO05D004768 1.1e-26 124.4 120 57.5
FvH4_4g27300 Fragaria vesca HOM05D004123 ORTHO05D004768 1.1e-26 124.4 160 49.4
TWI31G0276 Tripterygium wilfordii HOM05D004123 ORTHO05D004768 1.5e-26 124.0 111 61.3
PSO782G4509 Papaver somniferum HOM05D004123 ORTHO05D004768 2.0e-26 123.6 167 48.5
vmacro10561 Vaccinium macrocarpon HOM05D004123 ORTHO05D004768 2.6e-26 123.2 110 59.1
Actinidia14896 Actinidia chinensis HOM05D004123 ORTHO05D004768 4.4e-26 122.5 109 62.4
TAR622G0492 Trochodendron aralioides HOM05D004123 ORTHO05D004768 4.4e-26 122.5 177 45.8
Glyma.20G116200 Glycine max HOM05D004123 ORTHO05D004768 5.7e-26 122.1 130 53.8
HanXRQChr08g0213911 Helianthus annuus HOM05D004123 ORTHO05D004768 5.7e-26 122.1 157 49.0
MD13G1040900 Malus domestica HOM05D004123 ORTHO05D004768 1.3e-25 120.9 113 62.8
Lsat_1_v5_gn_3_59041 Lactuca sativa HOM05D004123 ORTHO05D004768 2.2e-25 120.2 154 50.0
Ciclev10018307m.g Citrus clementina HOM05D004123 ORTHO05D004768 2.8e-25 119.8 164 53.7
Lsat_1_v5_gn_8_40481 Lactuca sativa HOM05D004123 ORTHO05D004768 2.8e-25 119.8 154 50.0
SHI16201 Sapria himalayana HOM05D004123 ORTHO05D004768 2.8e-25 119.8 103 57.3
C06p41480 Brassica napus HOM05D004123 ORTHO05D004768 3.7e-25 119.4 104 58.7
BolC6t39275H Brassica oleracea HOM05D004123 ORTHO05D004768 3.7e-25 119.4 104 58.7
Carub.0002s1499 Capsella rubella HOM05D004123 ORTHO05D004768 3.7e-25 119.4 104 58.7
Solyc05g009380.4 Solanum lycopersicum HOM05D004123 ORTHO05D004768 3.7e-25 119.4 147 49.7
AT1G68480 Arabidopsis thaliana HOM05D004123 ORTHO05D004768 4.8e-25 119.0 104 58.7
CDE12G0443 Ceratophyllum demersum HOM05D004123 ORTHO05D004768 6.3e-25 118.6 115 54.8
Phvul.003G031000 Phaseolus vulgaris HOM05D004123 ORTHO05D004768 6.3e-25 118.6 104 60.6
Thhalv10019033m.g Eutrema salsugineum HOM05D004123 ORTHO05D004768 8.2e-25 118.2 104 59.6
CAN.G610.78 Capsicum annuum HOM05D004123 ORTHO05D004768 1.1e-24 117.9 99 63.6
CARHR061260 Cardamine hirsuta HOM05D004123 ORTHO05D004768 1.4e-24 117.5 104 57.7
BcaC08g46276 Brassica carinata HOM05D004123 ORTHO05D004768 1.8e-24 117.1 103 58.3
Lj5g0020149 Lotus japonicus HOM05D004123 ORTHO05D004768 2.4e-24 116.7 172 48.8
Sc04g0006360 Simmondsia chinensis HOM05D004123 ORTHO05D004768 3.1e-24 116.3 105 61.9
DCAR_026735 Daucus carota HOM05D004123 ORTHO05D004768 4.1e-24 115.9 164 46.3
Os01g0129200 Oryza sativa ssp. japonica HOM05D004123 ORTHO05D004768 4.1e-24 115.9 103 70.9
A07p34880 Brassica napus HOM05D004123 ORTHO05D004768 6.9e-24 115.2 104 58.7
BcaB05g24386 Brassica carinata HOM05D004123 ORTHO05D004768 9.1e-24 114.8 129 51.2
Haze_17490 Corylus avellana HOM05D004123 ORTHO05D004768 9.1e-24 114.8 170 47.6
BcaB03g15826 Brassica carinata HOM05D004123 ORTHO05D004768 1.2e-23 114.4 103 59.2
A02p15050 Brassica napus HOM05D004123 ORTHO05D004768 1.2e-23 114.4 107 57.9
Lj2g0014688 Lotus japonicus HOM05D004123 ORTHO05D004768 1.5e-23 114.0 163 47.2
Sp5g23550 Schrenkiella parvula HOM05D004123 ORTHO05D004768 1.5e-23 114.0 165 46.1
THA.LOC104821930 Tarenaya hassleriana HOM05D004123 ORTHO05D004768 2.0e-23 113.6 104 55.8
AL2G27340 Arabidopsis lyrata HOM05D004123 ORTHO05D004768 2.6e-23 113.2 141 48.9
ATR1125G037 Amborella trichopoda HOM05D004123 ORTHO05D004768 3.4e-23 112.8 164 44.5
Lj5g0023256 Lotus japonicus HOM05D004123 ORTHO05D004768 4.5e-23 112.5 170 45.9
Sabra08G0091900 Salix brachista HOM05D004123 ORTHO05D004768 5.9e-23 112.1 184 43.5
Zm00001eb335100 Zea mays HOM05D004123 ORTHO05D004768 1.0e-22 111.3 160 47.5
Sed0004295 Sechium edule HOM05D004123 ORTHO05D004768 2.9e-22 109.8 113 56.6
HPP92_004807 Vanilla planifolia HOM05D004123 ORTHO05D004768 2.9e-22 109.8 154 43.5
HPP92_004806 Vanilla planifolia HOM05D004123 ORTHO05D004768 6.5e-22 108.6 151 43.7
TWI75G1885 Tripterygium wilfordii HOM05D004123 ORTHO05D004768 8.5e-22 108.2 170 44.1
FAN12G0145 Fragaria x ananassa HOM05D004123 ORTHO05D004768 1.1e-21 107.8 188 41.5
FAN12G0921 Fragaria x ananassa HOM05D004123 ORTHO05D004768 1.1e-21 107.8 188 41.5
FAN22G2099 Fragaria x ananassa HOM05D004123 ORTHO05D004768 1.1e-21 107.8 189 41.3
ClCG03G009600 Citrullus lanatus HOM05D004123 ORTHO05D004768 1.4e-21 107.5 166 47.0
HanXRQChr09g0252701 Helianthus annuus HOM05D004123 ORTHO05D004768 1.9e-21 107.1 94 62.8
Lsat_1_v5_gn_8_41281 Lactuca sativa HOM05D004123 ORTHO05D004768 2.5e-21 106.7 159 45.3
Carub.0001s1311 Capsella rubella HOM05D004123 ORTHO05D004768 3.2e-21 106.3 161 49.1
FAN07G2244 Fragaria x ananassa HOM05D004123 ORTHO05D004768 3.2e-21 106.3 196 42.3
C02p24750 Brassica napus HOM05D004123 ORTHO05D004768 7.2e-21 105.1 107 61.7
CARHR013770 Cardamine hirsuta HOM05D004123 ORTHO05D004768 7.2e-21 105.1 161 47.2
BolC2t08567H Brassica oleracea HOM05D004123 ORTHO05D004768 1.2e-20 104.4 105 61.0
MD16G1042200 Malus domestica HOM05D004123 ORTHO05D004768 2.1e-20 103.6 114 55.3
Lalb_Chr21g0308891 Lupinus albus HOM05D004123 ORTHO05D004768 4.7e-20 102.4 100 57.0
THA.LOC104805254 Tarenaya hassleriana HOM05D004123 ORTHO05D004768 8.0e-20 101.7 167 43.7
AL1G25160 Arabidopsis lyrata HOM05D004123 ORTHO05D004768 1.4e-19 100.9 157 45.9
Lalb_Chr10g0100051 Lupinus albus HOM05D004123 ORTHO05D004768 1.4e-19 100.9 53 84.9
Thhalv10009343m.g Eutrema salsugineum HOM05D004123 ORTHO05D004768 1.8e-19 100.5 157 42.7
AT1G13400 Arabidopsis thaliana HOM05D004123 ORTHO05D004768 2.3e-19 100.1 161 43.5
VMungo1215G3079 Vigna mungo HOM05D004123 ORTHO05D004768 3.0e-19 99.8 104 54.8
Sp1g11890 Schrenkiella parvula HOM05D004123 ORTHO05D004768 6.7e-19 98.6 165 41.2
CSS0039482 Camellia sinensis var. sinensis HOM05D004123 ORTHO05D004768 2.0e-18 97.1 85 60.0
SalBow8G0756 Salvia bowleyana HOM05D004123 ORTHO05D004768 1.7e-17 94.0 156 47.4
TPR.G971 Trifolium pratense HOM05D004123 ORTHO05D004768 8.2e-17 91.7 93 58.1
Aa31LG1G1560 Aethionema arabicum HOM05D004123 ORTHO05D004768 1.1e-16 91.3 162 42.0
C08p16160 Brassica napus HOM05D004123 ORTHO05D004768 1.1e-16 91.3 165 38.8
BolC8t49237H Brassica oleracea HOM05D004123 ORTHO05D004768 7.0e-16 88.6 168 38.1
Sabra10G0094200 Salix brachista HOM05D004123 ORTHO05D004768 7.0e-16 88.6 93 52.7
BcaB03g13142 Brassica carinata HOM05D004123 ORTHO05D004768 9.1e-16 88.2 157 38.2
BcaC05g25048 Brassica carinata HOM05D004123 ORTHO05D004768 2.0e-15 87.0 113 48.7
A08p32310 Brassica napus HOM05D004123 ORTHO05D004768 2.2e-14 83.6 161 37.9
BraA08t35155Z Brassica rapa HOM05D004123 ORTHO05D004768 2.2e-14 83.6 161 37.9
Aa31sc366G10 Aethionema arabicum HOM05D004123 ORTHO05D004768 6.5e-14 82.0 184 35.9
Psat6g226920 Pisum sativum HOM05D004123 ORTHO05D004768 1.5e-13 80.9 168 36.3
Migut.L01390 Erythranthe guttata HOM05D004123 ORTHO05D004768 2.3e-11 73.6 46 80.4
SMO266G0088 Selaginella moellendorffii HOM05D004123 ORTHO05D004768 6.7e-11 72.0 53 64.2
Pp3c3_21050 Physcomitrium patens HOM05D004123 ORTHO05D004768 4.4e-10 69.3 54 55.6
Pp3c20_10790 Physcomitrium patens HOM05D004123 ORTHO05D004768 5.7e-10 68.9 48 64.6
Pp3c23_2190 Physcomitrium patens HOM05D004123 ORTHO05D004768 5.7e-10 68.9 58 51.7
SMO288G0011 Selaginella moellendorffii HOM05D004123 ORTHO05D004768 7.5e-10 68.6 97 44.3
AagrBONN_evm.TU.Sc2ySwM_228.1523 Anthoceros agrestis HOM05D004123 ORTHO05D004768 9.7e-10 68.2 48 66.7
Pp3c23_800 Physcomitrium patens HOM05D059517 ORTHO05D004768 4.8e-09 65.9 48 62.5
Dinv31634 Davidia involucrata HOM05D004123 ORTHO05D004768 6.3e-09 65.5 74 56.8
Pp3c23_960 Physcomitrium patens HOM05D004123 ORTHO05D004768 1.1e-08 64.7 49 57.1
Sopen05g005180 Solanum pennellii HOM05D004123 ORTHO05D004768 3.5e-07 59.7 70 54.3
Nitab4.5_0003373g0030 Nicotiana tabacum HOM05D004123 ORTHO05D004768 1.3e-06 57.8 80 51.2
Peaxi162Scf00382g00826 Petunia axillaris HOM05D004123 ORTHO05D004768 1.3e-06 57.8 77 49.4
RcHm_v2.0_Chr4g0435091 Rosa chinensis HOM05D004123 ORTHO05D004768 1.7e-06 57.4 86 48.8
arahy.Tifrunner.gnm1.ann1.U1U6XH Arachis hypogaea HOM05D004123 ORTHO05D004768 2.2e-06 57.0 130 36.9
SEGI_26835 Sequoiadendron giganteum HOM05D004123 ORTHO05D004768 5.0e-06 55.8 41 61.0


User provided reference genes

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