Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Migut.D02547 Erythranthe guttata HOM05D004280 ORTHO05D005059 4.5e-104 381.3 202 100.0
MSTRG.18872 Avicennia marina HOM05D004280 ORTHO05D005059 3.4e-91 338.6 202 88.1
SalBow6G7108 Salvia bowleyana HOM05D004280 ORTHO05D005059 1.4e-84 316.6 202 81.7
SalBow4G3146 Salvia bowleyana HOM05D004280 ORTHO05D005059 5.5e-78 294.7 248 67.7
Nn7g35895 Nelumbo nucifera HOM05D004280 ORTHO05D005059 4.0e-76 288.5 202 76.7
Dinv23876 Davidia involucrata HOM05D004280 ORTHO05D005059 2.6e-75 285.8 203 75.4
CSS0019544 Camellia sinensis var. sinensis HOM05D004280 ORTHO05D005059 7.5e-75 284.3 202 75.7
Manes.01G036600 Manihot esculenta HOM05D004280 ORTHO05D005059 1.8e-73 279.6 202 74.3
Lj2A726G7 Lonicera japonica HOM05D004280 ORTHO05D005059 2.4e-73 279.3 203 74.4
ECA248G0362 Erigeron canadensis HOM05D004280 ORTHO05D005059 3.5e-72 275.4 203 73.9
ECA233G4188 Erigeron canadensis HOM05D004280 ORTHO05D005059 1.7e-71 273.1 202 72.3
CSS0019811 Camellia sinensis var. sinensis HOM05D004280 ORTHO05D005059 2.3e-71 272.7 202 73.8
Glyma.06G309800 Glycine max HOM05D004280 ORTHO05D005059 1.5e-70 270.0 203 73.4
Glyma.14G130400 Glycine max HOM05D004280 ORTHO05D005059 1.5e-70 270.0 203 73.4
Ca_16394_v3 Cicer arietinum L. HOM05D004280 ORTHO05D005059 2.5e-70 269.2 203 71.4
Potri.003G218700 Populus trichocarpa HOM05D004280 ORTHO05D005059 3.3e-70 268.9 202 71.8
Glyma.14G154000 Glycine max HOM05D004280 ORTHO05D005059 5.6e-70 268.1 203 72.9
vmacro00623 Vaccinium macrocarpon HOM05D004280 ORTHO05D005059 7.3e-70 267.7 209 73.2
PGR102G2828 Punica granatum HOM05D004280 ORTHO05D005059 9.5e-70 267.3 195 73.8
Prupe.6G007100 Prunus persica HOM05D004280 ORTHO05D005059 1.6e-69 266.5 202 70.3
RhsimUnG0194900 Rhododendron simsii HOM05D004280 ORTHO05D005059 4.7e-69 265.0 207 72.0
CAN.G193.6 Capsicum annuum HOM05D004280 ORTHO05D005059 6.1e-69 264.6 202 69.3
Rhsim09G0027500 Rhododendron simsii HOM05D004280 ORTHO05D005059 8.0e-69 264.2 207 72.0
Solyc04g076580.4 Solanum lycopersicum HOM05D004280 ORTHO05D005059 1.0e-68 263.8 202 70.3
TWI60G1521 Tripterygium wilfordii HOM05D004280 ORTHO05D005059 1.4e-68 263.5 200 70.5
SGA_v2.0_scaffold693G53465 Striga asiatica HOM05D004280 ORTHO05D005059 1.8e-68 263.1 203 76.4
FvH4_3g45340 Fragaria vesca HOM05D004280 ORTHO05D005059 2.3e-68 262.7 206 68.4
Hma1.2p1_0843F.1_g227335 Hydrangea macrophylla HOM05D004280 ORTHO05D005059 2.3e-68 262.7 179 78.2
Hma1.2p1_0843F.1_g227340 Hydrangea macrophylla HOM05D004280 ORTHO05D005059 2.3e-68 262.7 179 78.2
Lj6g0003060 Lotus japonicus HOM05D004280 ORTHO05D005059 3.1e-68 262.3 203 71.4
SGA_v2.0_scaffold329G48825 Striga asiatica HOM05D004280 ORTHO05D005059 3.1e-68 262.3 204 76.0
MELO3C021620.2 Cucumis melo HOM05D004280 ORTHO05D005059 4.0e-68 261.9 201 71.6
SGA_v2.0_scaffold552G52891 Striga asiatica HOM05D004280 ORTHO05D005059 4.0e-68 261.9 203 75.9
Glyma.11G173655 Glycine max HOM05D004280 ORTHO05D005059 5.2e-68 261.5 204 72.5
Medtr3g083880 Medicago truncatula HOM05D004280 ORTHO05D005059 5.2e-68 261.5 203 70.0
Phvul.001G056600 Phaseolus vulgaris HOM05D004280 ORTHO05D005059 8.9e-68 260.8 203 70.9
QL01p008475 Quercus lobata HOM05D004280 ORTHO05D005059 8.9e-68 260.8 203 70.0
SGA_v2.0_scaffold738G53541 Striga asiatica HOM05D004280 ORTHO05D005059 2.6e-67 259.2 204 75.0
CANSAT01G2556 Cannabis sativa HOM05D004280 ORTHO05D005059 5.8e-67 258.1 206 68.9
TPR.G24159 Trifolium pratense HOM05D004280 ORTHO05D005059 5.8e-67 258.1 210 69.0
CiPaw.13G175600 Carya illinoinensis HOM05D004280 ORTHO05D005059 7.5e-67 257.7 204 70.6
Lsat_1_v5_gn_1_67700 Lactuca sativa HOM05D004280 ORTHO05D005059 7.5e-67 257.7 202 71.3
Ciclev10016632m.g Citrus clementina HOM05D004280 ORTHO05D005059 9.8e-67 257.3 202 68.8
Manes.04G095700 Manihot esculenta HOM05D004280 ORTHO05D005059 1.7e-66 256.5 202 69.8
CsaV3_5G026740 Cucumis sativus L. HOM05D004280 ORTHO05D005059 2.2e-66 256.1 201 70.1
VMungo0647G2277 Vigna mungo HOM05D004280 ORTHO05D005059 3.7e-66 255.4 203 70.4
ClCG09G019650 Citrullus lanatus HOM05D004280 ORTHO05D005059 4.9e-66 255.0 220 66.8
Psat5g102320 Pisum sativum HOM05D004280 ORTHO05D005059 6.4e-66 254.6 204 68.6
Haze_22956 Corylus avellana HOM05D004280 ORTHO05D005059 8.3e-66 254.2 205 69.8
Haze_22962 Corylus avellana HOM05D004280 ORTHO05D005059 8.3e-66 254.2 205 69.8
DCAR_009024 Daucus carota HOM05D004280 ORTHO05D005059 8.3e-66 254.2 205 69.3
CiPaw.16G086400 Carya illinoinensis HOM05D004280 ORTHO05D005059 1.4e-65 253.4 204 69.1
unitig_749.g13584 Utricularia gibba HOM05D004280 ORTHO05D005059 1.9e-65 253.1 182 74.2
Sc10g0001010 Simmondsia chinensis HOM05D004280 ORTHO05D005059 3.2e-65 252.3 202 68.8
Peaxi162Scf01112g00112 Petunia axillaris HOM05D004280 ORTHO05D005059 4.1e-65 251.9 202 68.3
Potri.001G006300 Populus trichocarpa HOM05D004280 ORTHO05D005059 7.0e-65 251.1 188 69.7
RcHm_v2.0_Chr4g0431981 Rosa chinensis HOM05D004280 ORTHO05D005059 7.0e-65 251.1 206 67.0
RcHm_v2.0_Chr5g0083141 Rosa chinensis HOM05D004280 ORTHO05D005059 7.0e-65 251.1 206 67.0
SGA_v2.0_scaffold521G52700 Striga asiatica HOM05D004280 ORTHO05D005059 1.6e-64 250.0 220 70.0
SGA_v2.0_scaffold674G53431 Striga asiatica HOM05D004280 ORTHO05D005059 1.6e-64 250.0 220 70.0
Cpa.g.sc119.63 Carica papaya HOM05D004280 ORTHO05D005059 2.0e-64 249.6 204 69.1
Thecc.09G208500 Theobroma cacao HOM05D004280 ORTHO05D005059 2.0e-64 249.6 178 72.5
Atru.chr1.3614 Acer truncatum HOM05D004280 ORTHO05D005059 7.8e-64 247.7 203 67.5
GSVIVG01025433001 Vitis vinifera HOM05D004280 ORTHO05D005059 7.8e-64 247.7 146 84.2
SGA_v2.0_scaffold13G06338 Striga asiatica HOM05D004280 ORTHO05D005059 1.7e-63 246.5 148 88.5
TAR623G1159 Trochodendron aralioides HOM05D004280 ORTHO05D005059 2.3e-63 246.1 148 81.8
Ah.04g157750 Amaranthus hybridus HOM05D004280 ORTHO05D005059 6.6e-63 244.6 212 66.0
Gohir.D08G021800 Gossypium hirsutum HOM05D004280 ORTHO05D005059 8.6e-63 244.2 179 69.8
Duzib170G0536 Durio zibethinus HOM05D004280 ORTHO05D005059 4.3e-62 241.9 167 72.5
MBI05_g32463_MAGBIO Magnolia biondii HOM05D004280 ORTHO05D005059 7.3e-62 241.1 196 68.4
Cc05_g01230 Coffea canephora HOM05D004280 ORTHO05D005059 9.5e-62 240.7 149 82.6
Aqoxy7G03617 Aquilegia oxysepala HOM05D004280 ORTHO05D005059 1.2e-61 240.4 148 80.4
SGA_v2.0_scaffold674G53436 Striga asiatica HOM05D004280 ORTHO05D005059 1.2e-61 240.4 220 67.7
Cc01_g00630 Coffea canephora HOM05D004280 ORTHO05D005059 1.6e-61 240.0 149 81.2
FAN16G1471 Fragaria x ananassa HOM05D004280 ORTHO05D005059 2.1e-61 239.6 236 58.1
Ah.04g157660 Amaranthus hybridus HOM05D004280 ORTHO05D005059 4.7e-61 238.4 212 64.6
AT1G55300 Arabidopsis thaliana HOM05D004280 ORTHO05D005059 4.7e-61 238.4 208 63.9
Duzib150G0115 Durio zibethinus HOM05D004280 ORTHO05D005059 6.2e-61 238.0 168 73.2
FAN21G3004 Fragaria x ananassa HOM05D004280 ORTHO05D005059 6.2e-61 238.0 206 64.1
Sed0023881 Sechium edule HOM05D004280 ORTHO05D005059 6.2e-61 238.0 145 82.8
Gohir.A08G011300 Gossypium hirsutum HOM05D004280 ORTHO05D005059 8.0e-61 237.7 160 73.1
Gorai.004G017100 Gossypium raimondii HOM05D004280 ORTHO05D005059 1.2e-59 233.8 148 77.0
HPP92_017297 Vanilla planifolia HOM05D004280 ORTHO05D005059 1.5e-59 233.4 145 80.0
Carub.0001s4380 Capsella rubella HOM05D004280 ORTHO05D005059 2.0e-59 233.0 208 62.5
FAN25G1542 Fragaria x ananassa HOM05D004280 ORTHO05D005059 4.4e-59 231.9 148 77.0
Sabra01G0004700 Salix brachista HOM05D004280 ORTHO05D005059 4.4e-59 231.9 189 64.6
arahy.Tifrunner.gnm1.ann1.0AF3IJ Arachis hypogaea HOM05D004280 ORTHO05D005059 5.8e-59 231.5 151 78.1
PSO210G5203 Papaver somniferum HOM05D004280 ORTHO05D005059 5.8e-59 231.5 171 74.3
PSO761G0405 Papaver somniferum HOM05D004280 ORTHO05D005059 5.8e-59 231.5 171 74.3
Hund03769 Selenicereus undatus HOM05D004280 ORTHO05D005059 5.8e-59 231.5 141 82.3
PGSC0003DMG401025662 Solanum tuberosum HOM05D004280 ORTHO05D005059 7.5e-59 231.1 148 79.7
CARHR044950 Cardamine hirsuta HOM05D004280 ORTHO05D005059 1.3e-58 230.3 209 62.2
Lsat_1_v5_gn_6_54260 Lactuca sativa HOM05D004280 ORTHO05D005059 2.2e-58 229.6 202 63.9
Os05g0347000 Oryza sativa ssp. japonica HOM05D004280 ORTHO05D005059 2.2e-58 229.6 206 66.0
Thhalv10011786m.g Eutrema salsugineum HOM05D004280 ORTHO05D005059 2.9e-58 229.2 209 62.2
FAN11G0747 Fragaria x ananassa HOM05D004280 ORTHO05D005059 2.9e-58 229.2 148 76.4
BraA05t20650Z Brassica rapa HOM05D004280 ORTHO05D005059 4.9e-58 228.4 213 59.6
Sp1g40960 Schrenkiella parvula HOM05D004280 ORTHO05D005059 6.4e-58 228.0 213 61.0
SEGI_26181 Sequoiadendron giganteum HOM05D004280 ORTHO05D005059 1.1e-57 227.3 206 62.6
Eucgr.B03612 Eucalyptus grandis HOM05D004280 ORTHO05D005059 3.2e-57 225.7 145 80.0
A05p17570 Brassica napus HOM05D004280 ORTHO05D005059 4.1e-57 225.3 212 59.9
COL.COLO4_35029 Corchorus olitorius HOM05D004280 ORTHO05D005059 9.2e-57 224.2 174 68.4
ATR0681G021 Amborella trichopoda HOM05D004280 ORTHO05D005059 1.2e-56 223.8 240 56.2
Rhsim02G0077200 Rhododendron simsii HOM05D004280 ORTHO05D005059 1.6e-56 223.4 148 76.4
Sabra03G0163100 Salix brachista HOM05D004280 ORTHO05D005059 1.6e-56 223.4 145 76.6
HanXRQChr13g0405321 Helianthus annuus HOM05D004280 ORTHO05D005059 3.5e-56 222.2 148 77.0
Aa31LG10G1060 Aethionema arabicum HOM05D004280 ORTHO05D005059 1.7e-55 219.9 181 61.9
BcaC08g44186 Brassica carinata HOM05D004280 ORTHO05D005059 1.7e-55 219.9 182 63.2
THA.LOC104822674 Tarenaya hassleriana HOM05D004280 ORTHO05D005059 1.7e-55 219.9 160 70.0
MD11G1008600 Malus domestica HOM05D004280 ORTHO05D005059 6.6e-55 218.0 148 74.3
Zm00001eb233380 Zea mays HOM05D004280 ORTHO05D005059 6.6e-55 218.0 204 63.2
C06p10250 Brassica napus HOM05D004280 ORTHO05D005059 1.1e-54 217.2 186 62.9
BcaB02g10831 Brassica carinata HOM05D004280 ORTHO05D005059 1.9e-54 216.5 152 70.4
Mapoly0011s0044 Marchantia polymorpha HOM05D004280 ORTHO05D005059 5.6e-54 214.9 195 60.5
A06p00280 Brassica napus HOM05D004280 ORTHO05D005059 7.3e-54 214.5 161 68.9
BolC6t36783H Brassica oleracea HOM05D004280 ORTHO05D005059 7.3e-54 214.5 145 73.1
MD03G1005700 Malus domestica HOM05D004280 ORTHO05D005059 7.3e-54 214.5 148 72.3
BolC6t36098H Brassica oleracea HOM05D004280 ORTHO05D005059 9.5e-54 214.2 145 72.4
AagrBONN_evm.TU.Sc2ySwM_344.2640 Anthoceros agrestis HOM05D004280 ORTHO05D005059 1.6e-53 213.4 152 68.4
BraA06t23245Z Brassica rapa HOM05D004280 ORTHO05D005059 1.6e-53 213.4 212 58.0
C06p15910 Brassica napus HOM05D004280 ORTHO05D005059 2.8e-53 212.6 187 59.9
PGSC0003DMG400009351 Solanum tuberosum HOM05D004280 ORTHO05D005059 6.8e-52 208.0 202 60.4
Oeu059672.2 Olea europaea HOM05D004280 ORTHO05D005059 1.2e-51 207.2 123 85.4
Nitab4.5_0000131g0050 Nicotiana tabacum HOM05D004280 ORTHO05D005059 2.2e-50 203.0 168 64.3
Lalb_Chr08g0230321 Lupinus albus HOM05D004280 ORTHO05D005059 2.9e-50 202.6 160 66.9
Pp3c14_18710 Physcomitrium patens HOM05D004280 ORTHO05D005059 3.7e-50 202.2 207 55.6
SEGI_04342 Sequoiadendron giganteum HOM05D004280 ORTHO05D005059 6.4e-50 201.4 200 55.5
Zm00001eb059570 Zea mays HOM05D004280 ORTHO05D005059 8.3e-50 201.1 148 71.6
AUR62015306 Chenopodium quinoa HOM05D004280 ORTHO05D005059 1.4e-49 200.3 178 64.0
AUR62032745 Chenopodium quinoa HOM05D004280 ORTHO05D005059 1.9e-49 199.9 178 62.9
Pp3c1_41986 Physcomitrium patens HOM05D004280 ORTHO05D005059 3.2e-49 199.1 145 69.7
Os01g0648500 Oryza sativa ssp. japonica HOM05D004280 ORTHO05D005059 9.2e-49 197.6 195 61.5
SGA_v2.0_scaffold6G03409 Striga asiatica HOM05D004280 ORTHO05D005059 1.6e-48 196.8 164 68.9
Zm00001eb395740 Zea mays HOM05D004280 ORTHO05D005059 2.1e-48 196.4 179 62.6
HanXRQChr01g0021661 Helianthus annuus HOM05D004280 ORTHO05D005059 2.7e-48 196.1 123 80.5
Phvul.001G056500 Phaseolus vulgaris HOM05D004280 ORTHO05D005059 2.3e-47 193.0 155 68.4
CBR_g22380 Chara braunii HOM05D004280 ORTHO05D005059 1.5e-46 190.3 188 54.3
Cc01_g02840 Coffea canephora HOM05D004280 ORTHO05D005059 4.3e-46 188.7 149 69.8
Cfa009582 Carpinus fangiana HOM05D004280 ORTHO05D005059 1.6e-45 186.8 226 54.0
SGA_v2.0_scaffold2280G54098 Striga asiatica HOM05D004280 ORTHO05D005059 5.2e-44 181.8 109 85.3
Zm00001eb068820 Zea mays HOM05D004280 ORTHO05D005059 1.2e-43 180.6 199 57.3
AL1G63340 Arabidopsis lyrata HOM05D004280 ORTHO05D005059 3.4e-43 179.1 160 63.1
Nitab4.5_0006954g0010 Nicotiana tabacum HOM05D004280 ORTHO05D005059 2.2e-42 176.4 145 64.8
SMO146G0138 Selaginella moellendorffii HOM05D004280 ORTHO05D005059 1.1e-41 174.1 204 50.0
SMO169G0010 Selaginella moellendorffii HOM05D004280 ORTHO05D005059 5.4e-41 171.8 149 59.1
Sed0016974 Sechium edule HOM05D004280 ORTHO05D005059 3.5e-40 169.1 191 52.9
Cc00_g23960 Coffea canephora HOM05D004280 ORTHO05D005059 4.6e-40 168.7 117 74.4
Haze_22967 Corylus avellana HOM05D004280 ORTHO05D005059 2.8e-37 159.5 106 75.5
Actinidia11301 Actinidia chinensis HOM05D004280 ORTHO05D005059 2.2e-34 149.8 90 83.3
Dinv13451 Davidia involucrata HOM05D004280 ORTHO05D005059 1.9e-33 146.7 92 81.5
Sopen00g013070 Solanum pennellii HOM05D004280 ORTHO05D005059 4.6e-32 142.1 136 58.8
Glyma.17G202802 Glycine max HOM05D004280 ORTHO05D005059 2.4e-28 129.8 81 77.8
Atru.chr7.1077 Acer truncatum HOM05D004280 ORTHO05D005059 1.1e-25 120.9 118 57.6
Zm00001eb211560 Zea mays HOM05D004280 ORTHO05D005059 1.2e-24 117.5 209 44.0
Cc00_g20490 Coffea canephora HOM05D004280 ORTHO05D005059 5.6e-22 108.6 84 69.0
AagrBONN_evm.TU.Sc2ySwM_362.2805 Anthoceros agrestis HOM05D004280 ORTHO05D005059 1.8e-20 103.6 275 33.1
Cre01.g011200 Chlamydomonas reinhardtii HOM05D004280 ORTHO05D005059 3.1e-20 102.8 169 36.1
PRCOL_00003189 Prasinoderma coloniale HOM05D004280 ORTHO05D005059 6.0e-16 88.6 204 30.9
EL10Ac4g09635 Beta vulgaris HOM05D004280 ORTHO05D005059 3.1e-12 76.3 77 55.8
unitig_26.g9445 Utricularia gibba HOM05D004280 ORTHO05D005059 6.9e-12 75.1 92 48.9
Cfa024345 Carpinus fangiana HOM05D004280 ORTHO05D122617 1.7e-10 70.5 188 30.9
Thhalv10012232m.g Eutrema salsugineum HOM05D004280 ORTHO05D005059 2.9e-10 69.7 68 57.4


User provided reference genes

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