Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Migut.D02503 Erythranthe guttata HOM05D004056 ORTHO05D004894 1.3e-120 436.4 220 100.0
MSTRG.18836 Avicennia marina HOM05D004056 ORTHO05D004894 1.1e-79 300.4 231 72.7
SalBow6G2821 Salvia bowleyana HOM05D004056 ORTHO05D004894 2.3e-77 292.7 215 74.4
SalBow6G5583 Salvia bowleyana HOM05D004056 ORTHO05D004894 2.3e-77 292.7 215 74.4
MSTRG.20969 Avicennia marina HOM05D004056 ORTHO05D004894 4.8e-75 285.0 209 74.2
Lj1A89T71 Lonicera japonica HOM05D004056 ORTHO05D004894 1.4e-71 273.5 218 67.0
Oeu051533.1 Olea europaea HOM05D004056 ORTHO05D004894 2.5e-71 272.7 215 67.4
Potri.002G246100 Populus trichocarpa HOM05D004056 ORTHO05D004894 2.7e-70 269.2 220 65.9
Sabra02G0187400 Salix brachista HOM05D004056 ORTHO05D004894 6.1e-70 268.1 222 65.3
Hma1.2p1_0226F.1_g095370 Hydrangea macrophylla HOM05D004056 ORTHO05D004894 1.5e-68 263.5 220 66.8
MSTRG.12776 Avicennia marina HOM05D004056 ORTHO05D004894 4.3e-68 261.9 215 64.2
Oeu057860.1 Olea europaea HOM05D004056 ORTHO05D004894 7.4e-68 261.2 202 68.3
vmacro02784 Vaccinium macrocarpon HOM05D004056 ORTHO05D004894 1.3e-67 260.4 228 65.4
Rhsim13G0047900 Rhododendron simsii HOM05D004056 ORTHO05D004894 1.6e-67 260.0 220 65.5
vmacro14736 Vaccinium macrocarpon HOM05D004056 ORTHO05D004894 1.6e-67 260.0 220 65.9
Dinv19168 Davidia involucrata HOM05D004056 ORTHO05D004894 2.2e-67 259.6 193 71.5
Actinidia39428 Actinidia chinensis HOM05D004056 ORTHO05D004894 8.2e-67 257.7 220 65.0
Rhsim01G0253300 Rhododendron simsii HOM05D004056 ORTHO05D004894 1.4e-66 256.9 220 65.9
Dinv00576 Davidia involucrata HOM05D004056 ORTHO05D004894 1.8e-66 256.5 218 65.6
Actinidia30050 Actinidia chinensis HOM05D004056 ORTHO05D004894 3.1e-66 255.8 220 64.5
COL.COLO4_34102 Corchorus olitorius HOM05D004056 ORTHO05D004894 2.6e-65 252.7 222 62.2
Solyc09g059510.3 Solanum lycopersicum HOM05D004056 ORTHO05D004894 2.6e-65 252.7 206 66.0
Thecc.01G219700 Theobroma cacao HOM05D004056 ORTHO05D004894 2.6e-65 252.7 222 61.3
Nitab4.5_0001161g0130 Nicotiana tabacum HOM05D004056 ORTHO05D004894 4.5e-65 251.9 206 66.0
Duzib138G1417 Durio zibethinus HOM05D004056 ORTHO05D004894 5.9e-65 251.5 208 64.9
CAN.G5.40 Capsicum annuum HOM05D004056 ORTHO05D004894 1.0e-64 250.8 210 64.8
Manes.13G049600 Manihot esculenta HOM05D004056 ORTHO05D004894 2.9e-64 249.2 215 62.3
SGA_v2.0_scaffold18G08335 Striga asiatica HOM05D004056 ORTHO05D004894 2.9e-64 249.2 215 63.7
Duzib133G0422 Durio zibethinus HOM05D004056 ORTHO05D004894 3.8e-64 248.8 220 61.4
DCAR_012671 Daucus carota HOM05D004056 ORTHO05D004894 2.5e-63 246.1 220 63.6
PGSC0003DMG400017485 Solanum tuberosum HOM05D004056 ORTHO05D004894 3.2e-63 245.7 198 65.7
Migut.N00633 Erythranthe guttata HOM05D004056 ORTHO05D004894 5.5e-63 245.0 229 60.7
Duzib211G0551 Durio zibethinus HOM05D004056 ORTHO05D004894 9.4e-63 244.2 222 59.9
Cfa004161 Carpinus fangiana HOM05D004056 ORTHO05D004894 1.6e-62 243.4 220 62.7
Nitab4.5_0000045g0550 Nicotiana tabacum HOM05D004056 ORTHO05D004894 3.6e-62 242.3 192 65.6
Nn1g07984 Nelumbo nucifera HOM05D004056 ORTHO05D004894 4.6e-62 241.9 220 60.9
MBI07_g18993_MAGBIO Magnolia biondii HOM05D004056 ORTHO05D004894 7.9e-62 241.1 207 63.3
CiPaw.01G050800 Carya illinoinensis HOM05D004056 ORTHO05D004894 1.0e-61 240.7 217 62.2
CDE09G0677 Ceratophyllum demersum HOM05D004056 ORTHO05D004894 1.0e-61 240.7 218 62.8
Ciclev10021891m.g Citrus clementina HOM05D004056 ORTHO05D004894 1.0e-61 240.7 234 59.0
Gohir.D07G205300 Gossypium hirsutum HOM05D004056 ORTHO05D004894 2.3e-61 239.6 208 62.5
Gorai.001G231300 Gossypium raimondii HOM05D004056 ORTHO05D004894 2.3e-61 239.6 208 62.5
Cc01_g16690 Coffea canephora HOM05D004056 ORTHO05D004894 3.9e-61 238.8 207 65.2
Gohir.A07G198800 Gossypium hirsutum HOM05D004056 ORTHO05D004894 8.8e-61 237.7 208 62.5
Gorai.001G188300 Gossypium raimondii HOM05D004056 ORTHO05D004894 1.5e-60 236.9 221 59.7
CiPaw.02G023900 Carya illinoinensis HOM05D004056 ORTHO05D004894 4.4e-60 235.3 220 62.3
TWI36G0821 Tripterygium wilfordii HOM05D004056 ORTHO05D004894 7.4e-60 234.6 223 57.0
Prupe.8G198700 Prunus persica HOM05D004056 ORTHO05D004894 9.7e-60 234.2 220 59.5
Dinv12647 Davidia involucrata HOM05D004056 ORTHO05D004894 1.3e-59 233.8 163 74.8
Manes.12G047500 Manihot esculenta HOM05D004056 ORTHO05D004894 1.3e-59 233.8 217 59.9
Gohir.D07G164400 Gossypium hirsutum HOM05D004056 ORTHO05D004894 1.7e-59 233.4 220 58.6
Atru.chr6.1427 Acer truncatum HOM05D004056 ORTHO05D004894 3.7e-59 232.3 214 58.9
Gohir.D11G145800 Gossypium hirsutum HOM05D004056 ORTHO05D004894 4.8e-59 231.9 222 57.7
Cpa.g.sc21.106 Carica papaya HOM05D004056 ORTHO05D004894 1.8e-58 229.9 234 55.1
Gorai.007G156300 Gossypium raimondii HOM05D004056 ORTHO05D004894 1.8e-58 229.9 222 57.2
Gohir.A11G139600 Gossypium hirsutum HOM05D004056 ORTHO05D004894 3.1e-58 229.2 222 56.3
MD05G1171400 Malus domestica HOM05D004056 ORTHO05D004894 3.1e-58 229.2 221 59.3
TWI18G1219 Tripterygium wilfordii HOM05D004056 ORTHO05D004894 3.1e-58 229.2 221 55.7
TAR636G0170 Trochodendron aralioides HOM05D004056 ORTHO05D004894 4.1e-58 228.8 218 59.6
CDE02G4431 Ceratophyllum demersum HOM05D004056 ORTHO05D004894 6.9e-58 228.0 217 61.8
Gohir.A07G093100 Gossypium hirsutum HOM05D004056 ORTHO05D004894 9.1e-58 227.6 206 58.7
Sopen09g022670 Solanum pennellii HOM05D004056 ORTHO05D004894 9.1e-58 227.6 206 60.7
Gorai.001G105100 Gossypium raimondii HOM05D004056 ORTHO05D004894 1.2e-57 227.3 206 58.7
Gohir.D07G097700 Gossypium hirsutum HOM05D004056 ORTHO05D004894 1.5e-57 226.9 206 58.7
Peaxi162Scf00068g00224 Petunia axillaris HOM05D004056 ORTHO05D004894 2.0e-57 226.5 187 63.6
CANSAT01G2574 Cannabis sativa HOM05D004056 ORTHO05D004894 5.9e-57 224.9 223 57.0
unitig_736.g22344 Utricularia gibba HOM05D004056 ORTHO05D004894 7.7e-57 224.6 191 64.4
VMungo1383G1286 Vigna mungo HOM05D004056 ORTHO05D004894 1.7e-56 223.4 219 58.0
Lj3g0018087 Lotus japonicus HOM05D004056 ORTHO05D004894 1.4e-55 220.3 210 59.5
Eucgr.K02136 Eucalyptus grandis HOM05D004056 ORTHO05D004894 2.5e-55 219.5 220 56.8
TAR362G0687 Trochodendron aralioides HOM05D004056 ORTHO05D004894 2.5e-55 219.5 206 59.7
Haze_15250 Corylus avellana HOM05D004056 ORTHO05D004894 3.2e-55 219.2 302 47.4
MD10G1159600 Malus domestica HOM05D004056 ORTHO05D004894 3.2e-55 219.2 226 57.5
Sc17g0002100 Simmondsia chinensis HOM05D004056 ORTHO05D004894 5.5e-55 218.4 224 56.7
Phvul.008G131500 Phaseolus vulgaris HOM05D004056 ORTHO05D004894 9.4e-55 217.6 220 56.4
DCAR_018636 Daucus carota HOM05D004056 ORTHO05D004894 1.6e-54 216.9 220 57.7
TPR.G11183 Trifolium pratense HOM05D004056 ORTHO05D004894 2.7e-54 216.1 207 59.9
arahy.Tifrunner.gnm1.ann1.8LB9ZD Arachis hypogaea HOM05D004056 ORTHO05D004894 3.6e-54 215.7 218 58.3
Lalb_Chr19g0125861 Lupinus albus HOM05D004056 ORTHO05D004894 6.1e-54 214.9 225 54.7
HPP92_024244 Vanilla planifolia HOM05D004056 ORTHO05D004894 1.4e-53 213.8 206 58.7
FvH4_2g18520 Fragaria vesca HOM05D004056 ORTHO05D004894 5.2e-53 211.8 219 54.3
HPP92_006215 Vanilla planifolia HOM05D004056 ORTHO05D004894 1.1e-52 210.7 206 59.2
RcHm_v2.0_Chr6g0284081 Rosa chinensis HOM05D004056 ORTHO05D004894 5.7e-52 208.4 225 52.0
Medtr8g012655 Medicago truncatula HOM05D004056 ORTHO05D004894 7.4e-52 208.0 208 59.1
TAR633G1317 Trochodendron aralioides HOM05D004056 ORTHO05D004894 1.3e-51 207.2 137 78.1
Medtr7g055857 Medicago truncatula HOM05D004056 ORTHO05D004894 2.2e-51 206.5 217 55.8
EL10Ac7g17907 Beta vulgaris HOM05D004056 ORTHO05D004894 2.8e-51 206.1 236 54.2
unitig_26.g9438 Utricularia gibba HOM05D004056 ORTHO05D004894 3.7e-51 205.7 206 59.2
Zm00001eb241420 Zea mays HOM05D004056 ORTHO05D004894 4.8e-51 205.3 208 54.3
Aqoxy5G00024 Aquilegia oxysepala HOM05D004056 ORTHO05D004894 6.3e-51 204.9 200 58.0
arahy.Tifrunner.gnm1.ann1.2MPX2Y Arachis hypogaea HOM05D004056 ORTHO05D004894 8.2e-51 204.5 259 49.8
Os02g0499000 Oryza sativa ssp. japonica HOM05D004056 ORTHO05D004894 2.4e-50 203.0 208 53.4
unitig_899.g15016 Utricularia gibba HOM05D004056 ORTHO05D004894 2.4e-50 203.0 216 56.5
Ca_23224_v3 Cicer arietinum L. HOM05D004056 ORTHO05D004894 4.1e-50 202.2 212 55.2
MD10G1039600 Malus domestica HOM05D001916 ORTHO05D004894 7.0e-50 201.4 175 62.3
Psat3g149240 Pisum sativum HOM05D004056 ORTHO05D004894 1.2e-49 200.7 219 54.8
Lsat_1_v5_gn_5_180841 Lactuca sativa HOM05D004056 ORTHO05D004894 1.6e-49 200.3 220 56.4
QL09p051117 Quercus lobata HOM05D004056 ORTHO05D004894 1.6e-49 200.3 312 43.6
TAR365G1100 Trochodendron aralioides HOM05D004056 ORTHO05D004894 1.0e-48 197.6 199 57.8
Gohir.A07G160800 Gossypium hirsutum HOM05D004056 ORTHO05D004894 1.7e-48 196.8 159 66.7
PGR044G2021 Punica granatum HOM05D004056 ORTHO05D004894 2.9e-48 196.1 223 52.9
FAN24G0472 Fragaria x ananassa HOM05D004056 ORTHO05D008391 8.5e-48 194.5 210 53.3
ATR0561G205 Amborella trichopoda HOM05D004056 ORTHO05D004894 4.2e-47 192.2 207 55.6
CsaV3_7G026330 Cucumis sativus L. HOM05D004056 ORTHO05D004894 5.5e-47 191.8 209 54.1
FAN27G1039 Fragaria x ananassa HOM05D004056 ORTHO05D004894 5.5e-47 191.8 189 57.1
HanXRQChr01g0015301 Helianthus annuus HOM05D004056 ORTHO05D004894 1.2e-46 190.7 214 55.6
Lsat_1_v5_gn_8_89300 Lactuca sativa HOM05D004056 ORTHO05D004894 2.1e-46 189.9 216 55.6
THA.LOC104804624 Tarenaya hassleriana HOM05D004056 ORTHO05D004894 2.7e-46 189.5 201 53.7
FAN15G2777 Fragaria x ananassa HOM05D004056 ORTHO05D008391 3.6e-46 189.1 188 55.9
Thhalv10026242m.g Eutrema salsugineum HOM05D004056 ORTHO05D004894 6.1e-46 188.3 214 52.3
GSVIVG01003250001 Vitis vinifera HOM05D004056 ORTHO05D004894 1.8e-45 186.8 116 79.3
VMungo0331G1907 Vigna mungo HOM05D004056 ORTHO05D004894 2.3e-45 186.4 214 52.3
Hund18433 Selenicereus undatus HOM05D004056 ORTHO05D004894 3.0e-45 186.0 195 53.3
CARHR218370 Cardamine hirsuta HOM05D004056 ORTHO05D004894 5.2e-45 185.3 201 54.7
BraA08t32730Z Brassica rapa HOM05D004056 ORTHO05D004894 1.2e-44 184.1 201 53.7
Sed0007046 Sechium edule HOM05D004056 ORTHO05D004894 2.0e-44 183.3 194 55.2
Lj1g0006098 Lotus japonicus HOM05D004056 ORTHO05D004894 3.3e-44 182.6 220 50.0
A08p07180 Brassica napus HOM05D004056 ORTHO05D004894 7.5e-44 181.4 202 53.5
C08p08780 Brassica napus HOM05D004056 ORTHO05D004894 7.5e-44 181.4 218 51.4
BcaC07g37403 Brassica carinata HOM05D004056 ORTHO05D004894 1.7e-43 180.3 218 50.9
BolC8t47725H Brassica oleracea HOM05D004056 ORTHO05D004894 1.7e-43 180.3 218 50.9
BcaB04g17724 Brassica carinata HOM05D004056 ORTHO05D004894 2.8e-43 179.5 221 49.8
ClCG07G002100 Citrullus lanatus HOM05D004056 ORTHO05D004894 2.8e-43 179.5 225 49.8
Sp7g10210 Schrenkiella parvula HOM05D004056 ORTHO05D004894 2.8e-43 179.5 223 49.3
unitig_699.g19750 Utricularia gibba HOM05D004056 ORTHO05D004894 4.8e-43 178.7 193 54.4
unitig_749.g13591 Utricularia gibba HOM05D004056 ORTHO05D004894 6.3e-43 178.3 169 62.1
AL9U11310 Arabidopsis lyrata HOM05D004056 ORTHO05D004894 8.2e-43 177.9 202 52.0
MELO3C022718.2 Cucumis melo HOM05D004056 ORTHO05D004894 1.4e-42 177.2 199 54.3
AUR62016545 Chenopodium quinoa HOM05D004056 ORTHO05D004894 1.8e-42 176.8 228 49.6
ClCG09G008620 Citrullus lanatus HOM05D004056 ORTHO05D004894 1.8e-42 176.8 190 55.3
Sed0026975 Sechium edule HOM05D004056 ORTHO05D004894 1.8e-42 176.8 191 52.9
CsaV3_3G030040 Cucumis sativus L. HOM05D004056 ORTHO05D004894 3.1e-42 176.0 202 55.0
ECA248G0601 Erigeron canadensis HOM05D004056 ORTHO05D004894 3.1e-42 176.0 196 54.6
SGA_v2.0_scaffold6G03510 Striga asiatica HOM05D004056 ORTHO05D004894 3.1e-42 176.0 113 77.9
Hund05580 Selenicereus undatus HOM05D004056 ORTHO05D004894 4.1e-42 175.6 211 50.7
AUR62001134 Chenopodium quinoa HOM05D004056 ORTHO05D004894 9.1e-42 174.5 220 49.5
Glyma.08G348300 Glycine max HOM05D004056 ORTHO05D004894 5.9e-41 171.8 219 47.5
HanXRQChr04g0108001 Helianthus annuus HOM05D004056 ORTHO05D004894 7.7e-41 171.4 196 53.1
MELO3C028860.2 Cucumis melo HOM05D004056 ORTHO05D004894 3.8e-40 169.1 274 42.7
Sed0002122 Sechium edule HOM05D004056 ORTHO05D004894 5.5e-39 165.2 113 74.3
TPR.G6483 Trifolium pratense HOM05D004056 ORTHO05D004894 7.2e-39 164.9 194 51.0
Ca_03473_v3 Cicer arietinum L. HOM05D004056 ORTHO05D004894 9.4e-39 164.5 231 47.2
PSO017G4055 Papaver somniferum HOM05D004056 ORTHO05D004894 1.6e-38 163.7 206 48.1
Pp3c6_9830 Physcomitrium patens HOM05D004056 ORTHO05D004894 3.6e-38 162.5 110 70.0
AT4G13040 Arabidopsis thaliana HOM05D004056 ORTHO05D004894 4.7e-38 162.2 102 78.4
PSO063G1373 Papaver somniferum HOM05D004056 ORTHO05D004894 6.1e-38 161.8 196 49.5
SMO172G0031 Selaginella moellendorffii HOM05D004056 ORTHO05D004894 4.0e-37 159.1 171 52.6
Aa31LG9G5020 Aethionema arabicum HOM05D004056 ORTHO05D004894 1.5e-36 157.1 178 51.1
Glyma.18G159900 Glycine max HOM05D004056 ORTHO05D004894 2.6e-36 156.4 117 66.7
Pp3c5_19550 Physcomitrium patens HOM05D004056 ORTHO05D004894 2.4e-34 149.8 210 46.2
Ah.08g214620 Amaranthus hybridus HOM05D004056 ORTHO05D004894 5.4e-34 148.7 194 47.9
THA.LOC104808796 Tarenaya hassleriana HOM05D004056 ORTHO05D004894 3.6e-30 136.0 193 49.2
C08p08770 Brassica napus HOM05D004056 ORTHO05D004894 1.4e-29 134.0 82 79.3
BolC8t47724H Brassica oleracea HOM05D004056 ORTHO05D004894 1.4e-29 134.0 82 79.3
ECA236G1380 Erigeron canadensis HOM05D004056 ORTHO05D004894 3.0e-29 132.9 109 66.1
Psat4g203800 Pisum sativum HOM05D004056 ORTHO05D004894 4.4e-28 129.0 160 52.5
HanXRQChr08g0235681 Helianthus annuus HOM05D004056 ORTHO05D004894 1.6e-25 120.6 80 70.0
Carub.0007s2973 Capsella rubella HOM05D004056 ORTHO05D004894 2.0e-25 120.2 170 48.2
SMO361G0763 Selaginella moellendorffii HOM05D004056 ORTHO05D004894 3.5e-25 119.4 128 54.7
CSS0045016 Camellia sinensis var. sinensis HOM05D000011 ORTHO05D000018 8.6e-24 114.8 62 87.1
CSS0004822 Camellia sinensis var. sinensis HOM05D004056 ORTHO05D004894 2.0e-17 93.6 71 69.0
CBR_g38383 Chara braunii HOM05D004056 ORTHO05D004894 1.7e-16 90.5 98 48.0
HPP92_024205 Vanilla planifolia HOM05D004056 ORTHO05D004894 5.0e-16 89.0 206 35.4
Pp3c4_8660 Physcomitrium patens HOM05D004056 ORTHO05D004504 8.3e-11 71.6 80 46.2
Pp3c13_22780 Physcomitrium patens HOM05D004056 ORTHO05D004504 1.4e-10 70.9 144 34.0
RcHm_v2.0_Chr3g0472871 Rosa chinensis HOM05D004056 ORTHO05D004894 7.0e-10 68.6 41 78.0
HanXRQChr12g0358981 Helianthus annuus HOM05D004056 ORTHO05D004894 6.6e-08 62.0 42 66.7


User provided reference genes

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