Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Migut.D02466 Erythranthe guttata HOM05D002559 ORTHO05D007057 3.1e-27 124.4 64 100.0
SGA_v2.0_scaffold114G31944 Striga asiatica HOM05D002559 ORTHO05D007057 8.0e-23 109.8 68 83.8
Hma1.2p1_0183F.1_g080980 Hydrangea macrophylla HOM05D002559 ORTHO05D007057 1.5e-21 105.5 62 80.6
MD12G1001600 Malus domestica HOM05D002559 ORTHO05D007057 1.5e-21 105.5 62 77.4
Duzib128G1749 Durio zibethinus HOM05D002559 ORTHO05D007057 2.0e-21 105.1 62 79.0
Duzib177G0252 Durio zibethinus HOM05D002559 ORTHO05D007057 2.0e-21 105.1 62 79.0
Peaxi162Scf00076g00818 Petunia axillaris HOM05D002559 ORTHO05D007057 2.0e-21 105.1 63 76.2
Manes.08G148900 Manihot esculenta HOM05D002559 ORTHO05D007057 5.7e-21 103.6 60 80.0
CAN.G1058.25 Capsicum annuum HOM05D002559 ORTHO05D007057 7.5e-21 103.2 63 73.0
Nn7g35814 Nelumbo nucifera HOM05D002559 ORTHO05D007057 7.5e-21 103.2 63 76.2
Prupe.1G559200 Prunus persica HOM05D002559 ORTHO05D007057 7.5e-21 103.2 62 79.0
Actinidia38620 Actinidia chinensis HOM05D002559 ORTHO05D007057 9.8e-21 102.8 63 77.8
Aqoxy4G00339 Aquilegia oxysepala HOM05D002559 ORTHO05D007057 9.8e-21 102.8 63 76.2
DCAR_019888 Daucus carota HOM05D002559 ORTHO05D007057 9.8e-21 102.8 62 75.8
Nitab4.5_0002741g0030 Nicotiana tabacum HOM05D002559 ORTHO05D007057 9.8e-21 102.8 63 73.0
TWI32G0130 Tripterygium wilfordii HOM05D002559 ORTHO05D007057 9.8e-21 102.8 62 75.8
QL05p033446 Quercus lobata HOM05D002559 ORTHO05D007057 1.3e-20 102.4 62 77.4
Thecc.05G254500 Theobroma cacao HOM05D002559 ORTHO05D007057 1.3e-20 102.4 62 79.0
Actinidia17309 Actinidia chinensis HOM05D002559 ORTHO05D007057 1.7e-20 102.1 63 79.4
CDE09G1258 Ceratophyllum demersum HOM05D002559 ORTHO05D007057 1.7e-20 102.1 63 77.8
Potri.001G023000 Populus trichocarpa HOM05D002559 ORTHO05D007057 1.7e-20 102.1 62 77.4
Peaxi162Scf00174g00130 Petunia axillaris HOM05D002559 ORTHO05D007057 2.2e-20 101.7 63 73.0
Sopen08g027110 Solanum pennellii HOM05D002559 ORTHO05D007057 2.9e-20 101.3 63 69.8
CiPaw.09G000700 Carya illinoinensis HOM05D002559 ORTHO05D007057 3.7e-20 100.9 62 74.2
Rhsim04G0086200 Rhododendron simsii HOM05D002559 ORTHO05D007057 4.9e-20 100.5 63 79.4
PGSC0003DMG400011890 Solanum tuberosum HOM05D002559 ORTHO05D007057 6.4e-20 100.1 63 73.0
PGR042G3247 Punica granatum HOM05D002559 ORTHO05D007057 8.3e-20 99.8 55 80.0
TWI60G1607 Tripterygium wilfordii HOM05D002559 ORTHO05D007057 8.3e-20 99.8 62 71.0
TAR369G0085 Trochodendron aralioides HOM05D002559 ORTHO05D007057 8.3e-20 99.8 63 73.0
ATR0789G037 Amborella trichopoda HOM05D002559 ORTHO05D007057 1.4e-19 99.0 61 77.0
MSTRG.18809 Avicennia marina HOM05D002559 ORTHO05D007057 1.8e-19 98.6 62 74.2
FvH4_5g23840 Fragaria vesca HOM05D002559 ORTHO05D007057 1.8e-19 98.6 63 74.6
Ciclev10022656m.g Citrus clementina HOM05D002559 ORTHO05D007057 2.4e-19 98.2 62 71.0
Thhalv10021750m.g Eutrema salsugineum HOM05D002559 ORTHO05D007057 2.4e-19 98.2 59 74.6
MD14G1001500 Malus domestica HOM05D002559 ORTHO05D007057 2.4e-19 98.2 61 73.8
Manes.07G112700 Manihot esculenta HOM05D002559 ORTHO05D007057 2.4e-19 98.2 60 75.0
Oeu003637.1 Olea europaea HOM05D002559 ORTHO05D010382 2.4e-19 98.2 55 76.4
MBI13_g37425_MAGBIO Magnolia biondii HOM05D002559 ORTHO05D007057 3.2e-19 97.8 61 75.4
RcHm_v2.0_Chr7g0213231 Rosa chinensis HOM05D002559 ORTHO05D007057 3.2e-19 97.8 63 74.6
arahy.Tifrunner.gnm1.ann1.1FX2LZ Arachis hypogaea HOM05D002559 ORTHO05D007057 4.1e-19 97.4 61 78.7
arahy.Tifrunner.gnm1.ann1.XAZK7H Arachis hypogaea HOM05D002559 ORTHO05D007057 4.1e-19 97.4 61 78.7
SGA_v2.0_scaffold261G45917 Striga asiatica HOM05D002559 ORTHO05D007057 4.1e-19 97.4 68 77.9
AL3G13950 Arabidopsis lyrata HOM05D002559 ORTHO05D007057 5.4e-19 97.1 59 74.6
AT3G04040 Arabidopsis thaliana HOM05D002559 ORTHO05D007057 5.4e-19 97.1 59 74.6
Psat0s2993g0320 Pisum sativum HOM05D002559 ORTHO05D007057 5.4e-19 97.1 58 77.6
vmacro09153 Vaccinium macrocarpon HOM05D002559 ORTHO05D007057 5.4e-19 97.1 63 74.6
Sc05g0008220 Simmondsia chinensis HOM05D002559 ORTHO05D007057 7.0e-19 96.7 64 76.6
Cfa016430 Carpinus fangiana HOM05D002559 ORTHO05D007057 9.2e-19 96.3 62 72.6
Ca_19406_v3 Cicer arietinum L. HOM05D002559 ORTHO05D007057 9.2e-19 96.3 58 77.6
Dinv36936 Davidia involucrata HOM05D002559 ORTHO05D007057 9.2e-19 96.3 50 84.0
Lj3g0010749 Lotus japonicus HOM05D002559 ORTHO05D007057 9.2e-19 96.3 58 75.9
CANSAT78G1541 Cannabis sativa HOM05D002559 ORTHO05D007057 1.2e-18 95.9 57 75.4
Duzib128G1541 Durio zibethinus HOM05D002559 ORTHO05D007057 1.2e-18 95.9 51 82.4
Ah.15g090300 Amaranthus hybridus HOM05D002559 ORTHO05D007057 1.6e-18 95.5 59 72.9
AUR62012531 Chenopodium quinoa HOM05D002559 ORTHO05D007057 1.6e-18 95.5 56 76.8
AUR62014664 Chenopodium quinoa HOM05D002559 ORTHO05D007057 1.6e-18 95.5 56 76.8
ECA248G1300 Erigeron canadensis HOM05D002559 ORTHO05D007057 1.6e-18 95.5 61 80.3
Phvul.011G094200 Phaseolus vulgaris HOM05D002559 ORTHO05D007057 1.6e-18 95.5 58 77.6
CARHR194810 Cardamine hirsuta HOM05D002559 ORTHO05D007057 2.7e-18 94.7 59 74.6
RcHm_v2.0_Chr1g0332111 Rosa chinensis HOM05D002559 ORTHO05D007057 2.7e-18 94.7 63 71.4
VMungo1127G1947 Vigna mungo HOM05D002559 ORTHO05D007057 2.7e-18 94.7 57 77.2
Aqoxy1G03079 Aquilegia oxysepala HOM05D002559 ORTHO05D007057 3.5e-18 94.4 55 76.4
AL6G29470 Arabidopsis lyrata HOM05D002559 ORTHO05D007057 3.5e-18 94.4 59 72.9
AT5G18250 Arabidopsis thaliana HOM05D002559 ORTHO05D007057 3.5e-18 94.4 59 72.9
CSS0010834 Camellia sinensis var. sinensis HOM05D002559 ORTHO05D007057 3.5e-18 94.4 63 71.4
Carub.0006s1654 Capsella rubella HOM05D002559 ORTHO05D007057 3.5e-18 94.4 59 72.9
Thhalv10014906m.g Eutrema salsugineum HOM05D002559 ORTHO05D007057 3.5e-18 94.4 59 72.9
Sp6g26070 Schrenkiella parvula HOM05D002559 ORTHO05D007057 3.5e-18 94.4 59 72.9
BcaB01g05183 Brassica carinata HOM05D002559 ORTHO05D007057 4.6e-18 94.0 59 72.9
BcaNung07325 Brassica carinata HOM05D002559 ORTHO05D007057 4.6e-18 94.0 59 71.2
A10p21270 Brassica napus HOM05D002559 ORTHO05D007057 4.6e-18 94.0 59 72.9
BraA10t44190Z Brassica rapa HOM05D002559 ORTHO05D007057 4.6e-18 94.0 59 72.9
Nitab4.5_0004741g0040 Nicotiana tabacum HOM05D002559 ORTHO05D007057 4.6e-18 94.0 50 80.0
BcaC04g18713 Brassica carinata HOM05D002559 ORTHO05D007057 5.9e-18 93.6 59 71.2
C09p58730 Brassica napus HOM05D002559 ORTHO05D007057 5.9e-18 93.6 59 71.2
A03p08750 Brassica napus HOM05D002559 ORTHO05D007057 7.8e-18 93.2 59 71.2
HanXRQChr01g0024871 Helianthus annuus HOM05D002559 ORTHO05D007057 7.8e-18 93.2 63 76.2
Hund23574 Selenicereus undatus HOM05D002559 ORTHO05D007057 7.8e-18 93.2 62 72.6
BolC9t58714H Brassica oleracea HOM05D002559 ORTHO05D007057 1.3e-17 92.4 59 71.2
Cc00_g05200 Coffea canephora HOM05D002559 ORTHO05D007057 1.3e-17 92.4 63 74.6
Medtr4g053290 Medicago truncatula HOM05D002559 ORTHO05D007057 1.7e-17 92.0 58 72.4
Os01g0264500 Oryza sativa ssp. japonica HOM05D002559 ORTHO05D007057 1.7e-17 92.0 56 75.0
Glyma.12G184600 Glycine max HOM05D002559 ORTHO05D007057 2.3e-17 91.7 62 72.6
Atru.chr2.1303 Acer truncatum HOM05D002559 ORTHO05D007057 3.0e-17 91.3 49 81.6
CsaV3_4G027570 Cucumis sativus L. HOM05D002559 ORTHO05D007057 5.0e-17 90.5 56 73.2
CsaV3_6G053220 Cucumis sativus L. HOM05D002559 ORTHO05D007057 8.6e-17 89.7 56 73.2
Gohir.A11G237800 Gossypium hirsutum HOM05D002559 ORTHO05D007057 8.6e-17 89.7 49 79.6
Gohir.D11G248300 Gossypium hirsutum HOM05D002559 ORTHO05D007057 8.6e-17 89.7 49 79.6
ECA240G0207 Erigeron canadensis HOM05D002459 ORTHO05D003006 1.1e-16 89.4 63 76.2
Sed0022774 Sechium edule HOM05D002559 ORTHO05D007057 1.5e-16 89.0 63 73.0
PSO541G3435 Papaver somniferum HOM05D002559 ORTHO05D007057 2.5e-16 88.2 64 73.4
THA.LOC104827263 Tarenaya hassleriana HOM05D002559 ORTHO05D007057 2.5e-16 88.2 47 80.9
EL10Ac7g17037 Beta vulgaris HOM05D002559 ORTHO05D007057 3.3e-16 87.8 56 71.4
BcaB08g36692 Brassica carinata HOM05D002559 ORTHO05D007057 5.6e-16 87.0 59 69.5
CDE02G0936 Ceratophyllum demersum HOM05D002559 ORTHO05D007057 5.6e-16 87.0 58 72.4
Nn2g15893 Nelumbo nucifera HOM05D002559 ORTHO05D007057 5.6e-16 87.0 53 69.8
Phvul.005G124000 Phaseolus vulgaris HOM05D002559 ORTHO05D007057 5.6e-16 87.0 61 70.5
unitig_748.g7790 Utricularia gibba HOM05D002559 ORTHO05D007057 7.3e-16 86.7 58 72.4
Zm00001eb333270 Zea mays HOM05D002559 ORTHO05D007057 7.3e-16 86.7 56 75.0
Aa31LG11G11330 Aethionema arabicum HOM05D002559 ORTHO05D007057 9.5e-16 86.3 63 69.8
HPP92_021154 Vanilla planifolia HOM05D002559 ORTHO05D007057 1.2e-15 85.9 67 64.2
Lalb_Chr00c36g0408721 Lupinus albus HOM05D002559 ORTHO05D007057 1.6e-15 85.5 57 71.9
TAR623G1558 Trochodendron aralioides HOM05D002559 ORTHO05D007057 1.6e-15 85.5 47 80.9
PSO339G2988 Papaver somniferum HOM05D002559 ORTHO05D007057 2.1e-15 85.1 63 69.8
PSO384G4200 Papaver somniferum HOM05D002559 ORTHO05D007057 2.8e-15 84.7 63 69.8
Gorai.007G264600 Gossypium raimondii HOM05D002559 ORTHO05D007057 3.6e-15 84.3 46 78.3
Lsat_1_v5_gn_1_58880 Lactuca sativa HOM05D002559 ORTHO05D007057 6.8e-14 80.1 47 76.6
GSVIVG01033380001 Vitis vinifera HOM05D002559 ORTHO05D007057 6.8e-14 80.1 48 72.9
Mapoly0006s0258 Marchantia polymorpha HOM05D002559 ORTHO05D007057 3.7e-12 74.3 61 59.0
Glyma.13G316700 Glycine max HOM05D002559 ORTHO05D007057 1.1e-11 72.8 40 77.5
Dinv37005 Davidia involucrata HOM05D002559 ORTHO05D007057 9.2e-11 69.7 35 77.1
COL.COLO4_36028 Corchorus olitorius HOM05D000211 ORTHO05D002682 2.0e-10 68.6 33 81.8
Lalb_Chr24g0392961 Lupinus albus HOM05D002559 ORTHO05D007057 3.5e-10 67.8 36 80.6
BolC3t13503H Brassica oleracea HOM05D002559 ORTHO05D007057 4.6e-10 67.4 35 74.3
QL11p027350 Quercus lobata HOM05D002559 ORTHO05D007057 6.0e-10 67.0 34 79.4
FAN13G0924 Fragaria x ananassa HOM05D002559 ORTHO05D007057 1.7e-09 65.5 44 77.3
C03p10180 Brassica napus HOM05D002559 ORTHO05D007057 3.9e-09 64.3 61 50.8
BraA03t10196Z Brassica rapa HOM05D002559 ORTHO05D007057 3.9e-09 64.3 61 50.8
Nn7g35948 Nelumbo nucifera HOM05D002559 ORTHO05D007687 4.7e-07 57.4 56 44.6
Carub.0006s1632 Capsella rubella HOM05D002559 ORTHO05D007057 6.2e-07 57.0 54 53.7
ECA238G4539 Erigeron canadensis HOM05D000002 ORTHO05D000001 8.1e-07 56.6 56 46.4
MBI19_g17432_MAGBIO Magnolia biondii HOM05D002559 ORTHO05D007687 1.1e-06 56.2 56 44.6
Nitab4.5_0000358g0040 Nicotiana tabacum HOM05D002559 ORTHO05D007687 4.0e-06 54.3 56 44.6
GSVIVG01033456001 Vitis vinifera HOM05D002559 ORTHO05D007687 5.2e-06 53.9 56 41.1
Dinv24051 Davidia involucrata HOM05D002559 ORTHO05D007687 6.8e-06 53.5 56 44.6
Lsat_1_v5_gn_2_56540 Lactuca sativa HOM05D002559 ORTHO05D007687 6.8e-06 53.5 56 42.9
Nitab4.5_0000698g0050 Nicotiana tabacum HOM05D002559 ORTHO05D007687 8.9e-06 53.1 56 44.6
HPP92_003743 Vanilla planifolia HOM05D002559 ORTHO05D007687 8.9e-06 53.1 56 41.1


User provided reference genes

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