Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Migut.D02414 Erythranthe guttata HOM05D003975 ORTHO05D009899 2.0e-42 175.3 83 100.0
SalBow6G3564 Salvia bowleyana HOM05D003975 ORTHO05D009899 3.9e-38 161.0 79 94.9
Thecc.09G275700 Theobroma cacao HOM05D003975 ORTHO05D009899 1.2e-34 149.4 79 82.3
Gorai.001G124000 Gossypium raimondii HOM05D003975 ORTHO05D009899 1.0e-33 146.4 79 79.7
RcHm_v2.0_Chr5g0047291 Rosa chinensis HOM05D003975 ORTHO05D009899 2.2e-33 145.2 79 83.5
Gohir.D07G115700 Gossypium hirsutum HOM05D003975 ORTHO05D009899 2.9e-33 144.8 79 78.5
Thecc.09G155000 Theobroma cacao HOM05D003975 ORTHO05D009899 2.9e-33 144.8 81 79.0
Duzib150G1666 Durio zibethinus HOM05D003975 ORTHO05D009899 5.0e-33 144.1 79 79.7
GSVIVG01036058001 Vitis vinifera HOM05D003975 ORTHO05D009899 5.0e-33 144.1 81 81.5
CSS0027551 Camellia sinensis var. sinensis HOM05D003975 ORTHO05D009899 6.5e-33 143.7 79 84.8
Hma1.2p1_0793F.1_g218650 Hydrangea macrophylla HOM05D003975 ORTHO05D009899 2.5e-32 141.7 79 81.0
Gohir.A07G112200 Gossypium hirsutum HOM05D003975 ORTHO05D009899 3.2e-32 141.4 79 77.2
Atru.chr3.3141 Acer truncatum HOM05D003975 ORTHO05D009899 9.4e-32 139.8 79 81.0
FAN21G0333 Fragaria x ananassa HOM05D004708 ORTHO05D005573 1.2e-31 139.4 79 79.7
QL01p011344 Quercus lobata HOM05D003975 ORTHO05D009899 1.2e-31 139.4 80 72.5
FAN11G2897 Fragaria x ananassa HOM05D004708 ORTHO05D009899 1.6e-31 139.0 79 79.7
MD03G1152900 Malus domestica HOM05D003975 ORTHO05D009899 1.6e-31 139.0 79 79.7
Cfa009967 Carpinus fangiana HOM05D003975 ORTHO05D009899 2.7e-31 138.3 79 73.4
ClCG02G022390 Citrullus lanatus HOM05D003975 ORTHO05D009899 4.7e-31 137.5 81 77.8
Dinv08130 Davidia involucrata HOM05D003975 ORTHO05D009899 7.9e-31 136.7 81 77.8
Prupe.6G140000 Prunus persica HOM05D003975 ORTHO05D009899 1.4e-30 136.0 79 78.5
Haze_23328 Corylus avellana HOM05D003975 ORTHO05D009899 2.3e-30 135.2 79 72.2
Eucgr.J00540 Eucalyptus grandis HOM05D003975 ORTHO05D009899 2.3e-30 135.2 79 75.9
CAN.G745.37 Capsicum annuum HOM05D003975 ORTHO05D009899 3.9e-30 134.4 79 77.2
Sed0002680 Sechium edule HOM05D003975 ORTHO05D009899 3.9e-30 134.4 80 77.5
Solyc11g068810.2 Solanum lycopersicum HOM05D003975 ORTHO05D009899 5.1e-30 134.0 79 75.9
Sopen11g027530 Solanum pennellii HOM05D003975 ORTHO05D009899 5.1e-30 134.0 79 75.9
Cc01_g08600 Coffea canephora HOM05D003975 ORTHO05D009899 6.7e-30 133.7 81 76.5
Nitab4.5_0000893g0020 Nicotiana tabacum HOM05D003975 ORTHO05D009899 6.7e-30 133.7 79 77.2
unitig_0.g1469 Utricularia gibba HOM05D003975 ORTHO05D009899 6.7e-30 133.7 79 77.2
COL.COLO4_22656 Corchorus olitorius HOM05D003975 ORTHO05D009899 8.8e-30 133.3 86 72.1
Nitab4.5_0001135g0190 Nicotiana tabacum HOM05D003975 ORTHO05D009899 8.8e-30 133.3 79 78.5
Aqoxy4G02677 Aquilegia oxysepala HOM05D003975 ORTHO05D009899 1.1e-29 132.9 85 72.9
CAN.G745.38 Capsicum annuum HOM05D003975 ORTHO05D009899 1.5e-29 132.5 79 75.9
Lalb_Chr09g0335081 Lupinus albus HOM05D003975 ORTHO05D009899 1.5e-29 132.5 79 72.2
PSO339G0200 Papaver somniferum HOM05D003975 ORTHO05D009899 1.5e-29 132.5 81 72.8
PSO384G0061 Papaver somniferum HOM05D003975 ORTHO05D009899 1.5e-29 132.5 81 72.8
MBI01_g04527_MAGBIO Magnolia biondii HOM05D003975 ORTHO05D009899 2.0e-29 132.1 79 73.4
DCAR_013070 Daucus carota HOM05D003975 ORTHO05D009899 4.4e-29 131.0 80 73.8
PGSC0003DMG400019630 Solanum tuberosum HOM05D003975 ORTHO05D009899 4.4e-29 131.0 79 74.7
Lsat_1_v5_gn_2_56181 Lactuca sativa HOM05D000240 ORTHO05D001153 5.7e-29 130.6 83 73.5
HanXRQChr09g0248811 Helianthus annuus HOM05D003975 ORTHO05D009899 9.7e-29 129.8 77 72.7
Nn6g34748 Nelumbo nucifera HOM05D003975 ORTHO05D009899 2.2e-28 128.6 82 73.2
ECA238G1997 Erigeron canadensis HOM05D003975 ORTHO05D009899 2.8e-28 128.3 79 73.4
TWI31G0968 Tripterygium wilfordii HOM05D003975 ORTHO05D009899 4.8e-28 127.5 78 73.1
TAR633G2299 Trochodendron aralioides HOM05D003975 ORTHO05D009899 6.3e-28 127.1 72 73.6
CANSAT54G1521 Cannabis sativa HOM05D003975 ORTHO05D009899 8.2e-28 126.7 77 72.7
MELO3C014515.2 Cucumis melo HOM05D003975 ORTHO05D009899 8.2e-28 126.7 79 74.7
Potri.004G201000 Populus trichocarpa HOM05D003975 ORTHO05D009899 4.1e-27 124.4 86 66.3
arahy.Tifrunner.gnm1.ann1.QQFJ2J Arachis hypogaea HOM05D003975 ORTHO05D009899 5.3e-27 124.0 79 67.1
arahy.Tifrunner.gnm1.ann1.V52YDZ Arachis hypogaea HOM05D003975 ORTHO05D009899 5.3e-27 124.0 79 67.1
THA.LOC104799562 Tarenaya hassleriana HOM05D003975 ORTHO05D009899 7.0e-27 123.6 80 71.2
Peaxi162Scf00224g00092 Petunia axillaris HOM05D003975 ORTHO05D009899 9.1e-27 123.2 70 77.1
Ciclev10029713m.g Citrus clementina HOM05D003975 ORTHO05D009899 1.6e-26 122.5 83 67.5
Potri.009G162200 Populus trichocarpa HOM05D003975 ORTHO05D009899 1.6e-26 122.5 86 64.0
AUR62011465 Chenopodium quinoa HOM05D003975 ORTHO05D009899 2.0e-26 122.1 79 68.4
ATR0772G086 Amborella trichopoda HOM05D003975 ORTHO05D009899 3.5e-26 121.3 83 65.1
Sabra04G0136000 Salix brachista HOM05D003975 ORTHO05D009762 5.9e-26 120.6 86 64.0
EL10Ac9g21860 Beta vulgaris HOM05D003975 ORTHO05D009899 1.0e-25 119.8 79 65.8
Glyma.08G290000 Glycine max HOM05D003975 ORTHO05D009899 1.3e-25 119.4 78 65.4
BcaC04g19558 Brassica carinata HOM05D003975 ORTHO05D009899 2.2e-25 118.6 81 66.7
C09p54430 Brassica napus HOM05D003975 ORTHO05D009899 2.2e-25 118.6 81 66.7
BolC9t58312H Brassica oleracea HOM05D003975 ORTHO05D009899 2.2e-25 118.6 81 66.7
A10p18580 Brassica napus HOM05D003975 ORTHO05D009899 2.9e-25 118.2 81 66.7
Glyma.18G134500 Glycine max HOM05D003975 ORTHO05D009899 2.9e-25 118.2 78 64.1
CsaV3_6G038520 Cucumis sativus L. HOM05D003975 ORTHO05D009899 3.8e-25 117.9 74 68.9
Sabra09G0126700 Salix brachista HOM05D003975 ORTHO05D009762 3.8e-25 117.9 86 60.5
Sabra15G0031600 Salix brachista HOM05D003975 ORTHO05D009899 3.8e-25 117.9 86 60.5
Sabra15G0048400 Salix brachista HOM05D003975 ORTHO05D009899 3.8e-25 117.9 86 60.5
Sabra15G0060100 Salix brachista HOM05D003975 ORTHO05D009899 3.8e-25 117.9 86 60.5
Sc03g0003650 Simmondsia chinensis HOM05D003975 ORTHO05D009899 5.0e-25 117.5 79 68.4
Sp6g23020 Schrenkiella parvula HOM05D003975 ORTHO05D009899 8.5e-25 116.7 84 65.5
Sabra15G0053200 Salix brachista HOM05D003975 ORTHO05D009899 1.1e-24 116.3 87 58.6
AUR62016590 Chenopodium quinoa HOM05D003975 ORTHO05D009899 1.5e-24 115.9 79 65.8
Phvul.003G054000 Phaseolus vulgaris HOM05D003975 ORTHO05D009899 1.5e-24 115.9 78 61.5
Sabra15G0046300 Salix brachista HOM05D003975 ORTHO05D009899 1.9e-24 115.5 85 60.0
Sabra15G0052000 Salix brachista HOM05D003975 ORTHO05D009899 1.9e-24 115.5 85 60.0
Sabra15G0053900 Salix brachista HOM05D003975 ORTHO05D009899 1.9e-24 115.5 85 60.0
BraA10t43938Z Brassica rapa HOM05D003975 ORTHO05D009899 2.5e-24 115.2 81 65.4
CARHR191340 Cardamine hirsuta HOM05D003975 ORTHO05D009899 3.2e-24 114.8 81 66.7
AT5G22210 Arabidopsis thaliana HOM05D003975 ORTHO05D009899 4.2e-24 114.4 81 66.7
BcaB08g36448 Brassica carinata HOM05D003975 ORTHO05D009899 9.4e-24 113.2 81 65.4
Ah.01g020290 Amaranthus hybridus HOM05D003975 ORTHO05D009899 2.1e-23 112.1 80 62.5
Carub.0006s1995 Capsella rubella HOM05D003975 ORTHO05D009899 3.6e-23 111.3 81 64.2
AL6G33210 Arabidopsis lyrata HOM05D003975 ORTHO05D009899 4.7e-23 110.9 81 65.4
HPP92_009773 Vanilla planifolia HOM05D000917 ORTHO05D009899 3.0e-22 108.2 80 57.5
HPP92_009742 Vanilla planifolia HOM05D000917 ORTHO05D000764 2.0e-21 105.5 81 56.8
TAR268G0001 Trochodendron aralioides HOM05D001423 ORTHO05D001412 1.8e-19 99.0 72 62.5
MBI04_g20761_MAGBIO Magnolia biondii HOM05D003975 ORTHO05D009899 5.5e-08 60.8 47 51.1


User provided reference genes

Program Settings