Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Migut.D02382 Erythranthe guttata HOM05D005413 ORTHO05D006536 2.0e-118 429.5 280 100.0
MSTRG.12398 Avicennia marina HOM05D005413 ORTHO05D006536 3.8e-69 265.8 231 62.3
CSS0023574 Camellia sinensis var. sinensis HOM05D005413 ORTHO05D006536 2.0e-57 226.9 229 58.1
Oeu031446.2 Olea europaea HOM05D005413 ORTHO05D006536 4.4e-57 225.7 230 53.0
unitig_899.g15382 Utricularia gibba HOM05D005413 ORTHO05D006536 2.2e-56 223.4 262 53.1
Nitab4.5_0000158g0110 Nicotiana tabacum HOM05D005413 ORTHO05D006536 2.4e-55 219.9 248 52.8
PGSC0003DMG400002998 Solanum tuberosum HOM05D005413 ORTHO05D006536 2.4e-55 219.9 243 53.5
SalBow6G6902 Salvia bowleyana HOM05D005413 ORTHO05D006536 3.5e-54 216.1 233 56.2
Hma1.2p1_0101F.1_g049660 Hydrangea macrophylla HOM05D005413 ORTHO05D006536 1.3e-53 214.2 227 54.2
Sopen11g029620 Solanum pennellii HOM05D005413 ORTHO05D006536 2.9e-53 213.0 243 51.4
Solyc11g071950.3 Solanum lycopersicum HOM05D005413 ORTHO05D006536 1.1e-52 211.1 238 52.1
Actinidia37056 Actinidia chinensis HOM05D005413 ORTHO05D006536 3.3e-52 209.5 231 55.8
Ciclev10028962m.g Citrus clementina HOM05D005413 ORTHO05D006536 5.5e-52 208.8 235 51.1
Lj2A950G18 Lonicera japonica HOM05D005413 ORTHO05D006536 3.6e-51 206.1 207 56.0
Dinv18856 Davidia involucrata HOM05D005413 ORTHO05D006536 4.7e-51 205.7 231 53.2
CiPaw.14G092700 Carya illinoinensis HOM05D005413 ORTHO05D006536 2.3e-50 203.4 230 51.3
FvH4_3g26150 Fragaria vesca HOM05D005413 ORTHO05D006536 2.6e-49 199.9 230 51.7
RcHm_v2.0_Chr5g0049091 Rosa chinensis HOM05D005413 ORTHO05D006536 2.6e-49 199.9 232 52.2
Cc01_g07840 Coffea canephora HOM05D005413 ORTHO05D006536 3.4e-49 199.5 201 56.7
Thecc.09G267600 Theobroma cacao HOM05D005413 ORTHO05D006536 7.5e-49 198.4 241 48.5
Actinidia11676 Actinidia chinensis HOM05D005413 ORTHO05D006536 9.8e-49 198.0 231 54.1
vmacro14313 Vaccinium macrocarpon HOM05D005413 ORTHO05D006536 4.9e-48 195.7 286 46.5
FAN11G2501 Fragaria x ananassa HOM05D005413 ORTHO05D006536 1.1e-47 194.5 233 51.1
Nitab4.5_0008364g0010 Nicotiana tabacum HOM05D005413 ORTHO05D006536 1.1e-47 194.5 223 52.9
GSVIVG01037530001 Vitis vinifera HOM05D005413 ORTHO05D006536 1.1e-47 194.5 228 50.9
Peaxi162Scf00429g00512 Petunia axillaris HOM05D005413 ORTHO05D006536 1.8e-47 193.7 199 56.3
Duzib168G1403 Durio zibethinus HOM05D005413 ORTHO05D006536 9.2e-47 191.4 245 46.5
Duzib170G0305 Durio zibethinus HOM05D005413 ORTHO05D006536 1.2e-46 191.0 241 46.9
ECA238G0598 Erigeron canadensis HOM05D005413 ORTHO05D006536 1.2e-46 191.0 235 51.5
FAN25G1874 Fragaria x ananassa HOM05D005413 ORTHO05D006536 7.8e-46 188.3 233 49.8
Nn2g14375 Nelumbo nucifera HOM05D005413 ORTHO05D006536 2.3e-45 186.8 227 48.5
SGA_v2.0_scaffold22G09835 Striga asiatica HOM05D005413 ORTHO05D006536 1.1e-44 184.5 170 61.2
TWI79G1192 Tripterygium wilfordii HOM05D005413 ORTHO05D006536 1.9e-44 183.7 232 48.7
TAR623G0045 Trochodendron aralioides HOM05D005413 ORTHO05D006536 1.9e-44 183.7 232 47.4
Rhsim01G0199900 Rhododendron simsii HOM05D005413 ORTHO05D006536 2.5e-44 183.3 332 40.7
Atru.chr3.3078 Acer truncatum HOM05D005413 ORTHO05D006536 4.3e-44 182.6 234 47.0
Atru.chr3.3087 Acer truncatum HOM05D005413 ORTHO05D006536 4.3e-44 182.6 234 47.0
TPR.G4599 Trifolium pratense HOM05D005413 ORTHO05D006536 7.3e-44 181.8 232 46.1
QL01p019216 Quercus lobata HOM05D005413 ORTHO05D006536 1.6e-43 180.6 206 52.4
Medtr4g050330 Medicago truncatula HOM05D005413 ORTHO05D006536 3.6e-43 179.5 232 44.8
FAN16G0400 Fragaria x ananassa HOM05D005413 ORTHO05D006536 8.0e-43 178.3 206 51.5
FAN16G2334 Fragaria x ananassa HOM05D005413 ORTHO05D006536 8.0e-43 178.3 206 51.5
Prupe.6G147200 Prunus persica HOM05D005413 ORTHO05D006536 1.4e-42 177.6 236 47.0
DCAR_012252 Daucus carota HOM05D005413 ORTHO05D006536 1.2e-41 174.5 207 49.8
Psat7g200680 Pisum sativum HOM05D005413 ORTHO05D006536 1.5e-41 174.1 233 45.5
Lalb_Chr19g0136161 Lupinus albus HOM05D005413 ORTHO05D006536 2.0e-41 173.7 232 46.6
COL.COLO4_00160 Corchorus olitorius HOM05D005413 ORTHO05D006536 5.8e-41 172.2 215 48.8
Ca_19483_v3 Cicer arietinum L. HOM05D005413 ORTHO05D006536 1.3e-40 171.0 234 44.4
Rhsim01G0199600 Rhododendron simsii HOM05D005413 ORTHO05D006536 1.3e-40 171.0 347 37.2
Gohir.A05G077100 Gossypium hirsutum HOM05D005413 ORTHO05D006536 2.2e-40 170.2 240 44.2
MBI15_g31416_MAGBIO Magnolia biondii HOM05D005413 ORTHO05D006536 3.7e-40 169.5 224 44.6
PGR119G0748 Punica granatum HOM05D005413 ORTHO05D006536 4.9e-40 169.1 236 45.8
Gorai.009G081500 Gossypium raimondii HOM05D005413 ORTHO05D006536 6.4e-40 168.7 240 44.2
HanXRQChr05g0137071 Helianthus annuus HOM05D005413 ORTHO05D006536 6.4e-40 168.7 248 47.2
Gohir.D05G079900 Gossypium hirsutum HOM05D005413 ORTHO05D006536 1.9e-39 167.2 240 43.8
ClCG02G022490 Citrullus lanatus HOM05D005413 ORTHO05D006536 4.1e-39 166.0 233 45.9
Manes.11G103700 Manihot esculenta HOM05D005413 ORTHO05D006536 5.4e-39 165.6 237 44.3
VMungo1127G2102 Vigna mungo HOM05D005413 ORTHO05D006536 5.4e-39 165.6 232 45.3
MD11G1174800 Malus domestica HOM05D005413 ORTHO05D006536 7.0e-39 165.2 235 44.7
CsaV3_6G038630 Cucumis sativus L. HOM05D005413 ORTHO05D006536 9.2e-39 164.9 232 44.8
MELO3C014525.2 Cucumis melo HOM05D005413 ORTHO05D006536 1.6e-38 164.1 232 44.8
Eucgr.J00585 Eucalyptus grandis HOM05D005413 ORTHO05D006536 1.6e-38 164.1 228 46.5
Lj3g0006130 Lotus japonicus HOM05D005413 ORTHO05D006536 7.8e-38 161.8 232 43.1
TAR633G2414 Trochodendron aralioides HOM05D005413 ORTHO05D006536 7.8e-38 161.8 216 45.4
Phvul.011G100200 Phaseolus vulgaris HOM05D005413 ORTHO05D006536 1.3e-37 161.0 233 45.1
arahy.Tifrunner.gnm1.ann1.K4CWT5 Arachis hypogaea HOM05D005413 ORTHO05D006536 5.0e-37 159.1 212 47.6
arahy.Tifrunner.gnm1.ann1.C0JSMI Arachis hypogaea HOM05D005413 ORTHO05D006536 8.6e-37 158.3 212 47.6
DCAR_018207 Daucus carota HOM05D005413 ORTHO05D006536 1.5e-36 157.5 230 43.0
Thhalv10014324m.g Eutrema salsugineum HOM05D005413 ORTHO05D006536 4.3e-36 156.0 247 42.9
CSS0050484 Camellia sinensis var. sinensis HOM05D005413 ORTHO05D006536 5.6e-36 155.6 207 47.8
Potri.010G244600 Populus trichocarpa HOM05D005413 ORTHO05D006536 1.2e-35 154.5 229 45.0
Dinv04422 Davidia involucrata HOM05D005413 ORTHO05D006536 6.2e-35 152.1 237 40.9
BcaC01g06609 Brassica carinata HOM05D005413 ORTHO05D006536 1.8e-34 150.6 244 41.8
BolC3t13687H Brassica oleracea HOM05D005413 ORTHO05D006536 1.8e-34 150.6 244 41.8
Lalb_Chr03g0028501 Lupinus albus HOM05D005413 ORTHO05D006536 1.8e-34 150.6 231 42.9
Potri.008G015500 Populus trichocarpa HOM05D005413 ORTHO05D006536 3.1e-34 149.8 236 44.1
ATR1120G017 Amborella trichopoda HOM05D005413 ORTHO05D006536 1.5e-33 147.5 226 38.1
BraA03t10367Z Brassica rapa HOM05D005413 ORTHO05D006536 1.5e-33 147.5 244 41.4
MD03G1159500 Malus domestica HOM05D005413 ORTHO05D006536 2.6e-33 146.7 235 40.9
Potri.008G001700 Populus trichocarpa HOM05D005413 ORTHO05D006536 4.4e-33 146.0 236 43.6
FAN21G0466 Fragaria x ananassa HOM05D005413 ORTHO05D006536 5.8e-33 145.6 233 42.9
Glyma.12G095900 Glycine max HOM05D005413 ORTHO05D006536 7.5e-33 145.2 228 43.4
A03p10550 Brassica napus HOM05D005413 ORTHO05D006536 1.7e-32 144.1 244 41.0
C03p12140 Brassica napus HOM05D005413 ORTHO05D006536 1.7e-32 144.1 246 41.1
Sp6g23150 Schrenkiella parvula HOM05D005413 ORTHO05D006536 2.9e-32 143.3 247 40.9
Hma1.2p1_0098F.1_g048260 Hydrangea macrophylla HOM05D005413 ORTHO05D006536 3.7e-32 142.9 226 43.4
AUR62024117 Chenopodium quinoa HOM05D005413 ORTHO05D006536 8.3e-32 141.7 237 42.6
Hund06812 Selenicereus undatus HOM05D005413 ORTHO05D006536 1.9e-31 140.6 232 41.8
Sabra10G0191100 Salix brachista HOM05D005413 ORTHO05D006536 2.7e-30 136.7 202 44.6
Glyma.11G171773 Glycine max HOM05D005413 ORTHO05D006536 6.0e-30 135.6 244 39.8
CDE04G1023 Ceratophyllum demersum HOM05D005413 ORTHO05D006536 7.8e-30 135.2 233 39.1
HPP92_015644 Vanilla planifolia HOM05D005413 ORTHO05D006536 7.8e-30 135.2 233 39.9
CARHR191490 Cardamine hirsuta HOM05D005413 ORTHO05D006536 1.0e-29 134.8 251 40.6
Aqoxy1G00612 Aquilegia oxysepala HOM05D005413 ORTHO05D006536 1.3e-29 134.4 239 35.6
Ah.03g136210 Amaranthus hybridus HOM05D005413 ORTHO05D006536 1.7e-29 134.0 235 40.4
Sc09g0004800 Simmondsia chinensis HOM05D005413 ORTHO05D006536 2.3e-29 133.7 228 41.2
Cfa010502 Carpinus fangiana HOM05D005413 ORTHO05D006536 2.5e-28 130.2 227 39.6
Sabra08G0009400 Salix brachista HOM05D005413 ORTHO05D006536 2.5e-28 130.2 226 38.1
Dinv33562 Davidia involucrata HOM05D005413 ORTHO05D006536 9.5e-28 128.3 114 56.1
Oeu033267.1 Olea europaea HOM05D005413 ORTHO05D006536 9.5e-28 128.3 218 41.3
Sed0018758 Sechium edule HOM05D005413 ORTHO05D006536 9.5e-28 128.3 167 48.5
EL10Ac6g13493 Beta vulgaris HOM05D005413 ORTHO05D006536 1.2e-27 127.9 237 39.7
Rhsim03G0094100 Rhododendron simsii HOM05D005413 ORTHO05D006536 1.2e-27 127.9 144 50.7
Haze_03431 Corylus avellana HOM05D005413 ORTHO05D006536 1.6e-27 127.5 155 47.1
QL04p048808 Quercus lobata HOM05D005413 ORTHO05D006536 2.8e-27 126.7 145 49.0
Dinv03807 Davidia involucrata HOM05D005413 ORTHO05D006536 8.1e-27 125.2 163 47.9
vmacro07276 Vaccinium macrocarpon HOM05D005413 ORTHO05D006536 8.1e-27 125.2 145 49.7
SEGI_03865 Sequoiadendron giganteum HOM05D005413 ORTHO05D006536 1.1e-26 124.8 252 37.7
Thecc.10G119400 Theobroma cacao HOM05D005413 ORTHO05D006536 2.3e-26 123.6 228 38.2
PSO339G2181 Papaver somniferum HOM05D005413 ORTHO05D006536 8.9e-26 121.7 258 34.5
AUR62005613 Chenopodium quinoa HOM05D005413 ORTHO05D006536 1.2e-25 121.3 207 43.0
Oeu029208.1 Olea europaea HOM05D005413 ORTHO05D006536 2.0e-25 120.6 102 63.7
PSO384G0849 Papaver somniferum HOM05D005413 ORTHO05D006536 7.6e-25 118.6 258 33.3
CDE07G0886 Ceratophyllum demersum HOM05D005413 ORTHO05D006536 2.9e-24 116.7 166 45.2
Lsat_1_v5_gn_2_106300 Lactuca sativa HOM05D005413 ORTHO05D006536 4.9e-24 115.9 225 38.2
Os03g0274700 Oryza sativa ssp. japonica HOM05D005413 ORTHO05D006536 1.1e-23 114.8 227 37.9
Zm00001eb012330 Zea mays HOM05D005413 ORTHO05D006536 4.6e-22 109.4 223 36.3
Aa31LG1G13390 Aethionema arabicum HOM05D005413 ORTHO05D006536 6.0e-22 109.0 254 33.5
Lj5g0017620 Lotus japonicus HOM05D005413 ORTHO05D006536 7.8e-22 108.6 207 37.2
arahy.Tifrunner.gnm1.ann1.0IPW5R Arachis hypogaea HOM05D005413 ORTHO05D006536 1.3e-21 107.8 212 39.2
SEGI_29962 Sequoiadendron giganteum HOM05D005852 ORTHO05D000002 1.3e-21 107.8 238 33.2
BcaB01g04747 Brassica carinata HOM05D005413 ORTHO05D006536 2.3e-21 107.1 225 38.2
THA.LOC104815083 Tarenaya hassleriana HOM05D005413 ORTHO05D006536 3.9e-21 106.3 241 34.0
arahy.Tifrunner.gnm1.ann1.BD57S3 Arachis hypogaea HOM05D005413 ORTHO05D006536 6.6e-21 105.5 212 37.7
Haze_03425 Corylus avellana HOM05D005413 ORTHO05D006536 7.3e-20 102.1 127 44.9
AT5G22040 Arabidopsis thaliana HOM05D005413 ORTHO05D006536 1.2e-19 101.3 250 36.0
Carub.0006s1968 Capsella rubella HOM05D005413 ORTHO05D006536 4.7e-19 99.4 251 33.9
THA.LOC104810942 Tarenaya hassleriana HOM05D001091 ORTHO05D001020 1.8e-18 97.4 122 44.3
Mapoly0068s0092 Marchantia polymorpha HOM05D005852 ORTHO05D006688 2.4e-18 97.1 125 45.6
AL6G33000 Arabidopsis lyrata HOM05D005413 ORTHO05D006536 5.2e-18 95.9 247 32.8
Medtr1g090350 Medicago truncatula HOM05D005413 ORTHO05D006536 1.2e-17 94.7 132 39.4
Ca_10423_v3 Cicer arietinum L. HOM05D005413 ORTHO05D006536 2.6e-17 93.6 204 33.8
Lalb_Chr21g0312751 Lupinus albus HOM05D005413 ORTHO05D006536 9.9e-17 91.7 152 42.1
Phvul.007G136700 Phaseolus vulgaris HOM05D005413 ORTHO05D006536 1.3e-16 91.3 171 36.8
TPR.G10267 Trifolium pratense HOM05D005413 ORTHO05D006536 8.4e-16 88.6 208 32.2
AagrBONN_evm.TU.Sc2ySwM_344.2258 Anthoceros agrestis HOM05D004246 ORTHO05D005035 9.3e-15 85.1 153 38.6
Cpa.g.sc33.125 Carica papaya HOM05D005413 ORTHO05D006536 7.8e-14 82.0 83 55.4
Lj2C36T10 Lonicera japonica HOM05D005413 ORTHO05D006536 1.3e-13 81.3 181 34.8
BcaB05g22753 Brassica carinata HOM05D005413 ORTHO05D006536 9.0e-10 68.6 53 64.2
PGR044G1324 Punica granatum HOM05D003044 ORTHO05D001869 7.6e-09 65.5 69 47.8
SMO236G0022 Selaginella moellendorffii HOM05D017472 ORTHO05D006688 7.6e-09 65.5 127 36.2
BcaNung07133 Brassica carinata HOM05D005413 ORTHO05D006536 2.2e-08 63.9 132 40.9
CBR_g31172 Chara braunii HOM05D005852 ORTHO05D006688 4.2e-07 59.7 72 45.8


User provided reference genes

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