Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Migut.D02196 Erythranthe guttata HOM05D008415 ORTHO05D010601 5.0e-143 511.1 266 100.0
MSTRG.18650 Avicennia marina HOM05D008415 ORTHO05D010601 8.1e-77 291.2 274 62.8
SalBow3G0300 Salvia bowleyana HOM05D008415 ORTHO05D010601 3.3e-70 269.2 285 58.9
Oeu059099.1 Olea europaea HOM05D008415 ORTHO05D010601 1.5e-59 233.8 282 50.4
SGA_v2.0_scaffold61G21159 Striga asiatica HOM05D008415 ORTHO05D010601 1.2e-56 224.2 270 51.9
Solyc11g069210.2 Solanum lycopersicum HOM05D008415 ORTHO05D010601 5.8e-51 205.3 254 48.4
PGSC0003DMG400008064 Solanum tuberosum HOM05D008415 ORTHO05D010601 9.9e-51 204.5 254 49.2
Dinv32770 Davidia involucrata HOM05D008415 ORTHO05D010601 2.7e-48 196.4 277 48.4
CAN.G631.8 Capsicum annuum HOM05D008415 ORTHO05D010601 1.0e-47 194.5 271 48.0
Sopen11g027940 Solanum pennellii HOM05D008415 ORTHO05D010601 3.9e-47 192.6 251 48.2
vmacro14451 Vaccinium macrocarpon HOM05D008415 ORTHO05D010601 1.9e-46 190.3 265 45.7
Nitab4.5_0000650g0050 Nicotiana tabacum HOM05D008415 ORTHO05D010601 3.3e-46 189.5 266 46.6
Peaxi162Scf00351g00214 Petunia axillaris HOM05D008415 ORTHO05D010601 3.3e-46 189.5 240 50.0
Cc01_g11390 Coffea canephora HOM05D008415 ORTHO05D010601 1.3e-45 187.6 287 48.1
QL01p023166 Quercus lobata HOM05D008415 ORTHO05D010601 1.8e-44 183.7 258 48.4
Rhsim01G0218700 Rhododendron simsii HOM05D008415 ORTHO05D010601 3.1e-44 183.0 270 47.4
ECA238G2082 Erigeron canadensis HOM05D008415 ORTHO05D010601 3.8e-42 176.0 278 43.2
unitig_46.g18232 Utricularia gibba HOM05D008415 ORTHO05D010601 1.9e-41 173.7 199 55.3
GSVIVG01025161001 Vitis vinifera HOM05D008415 ORTHO05D010601 4.2e-41 172.6 197 53.3
PGR119G0199 Punica granatum HOM05D008415 ORTHO05D010601 1.2e-40 171.0 217 47.5
Lsat_1_v5_gn_2_98161 Lactuca sativa HOM05D008415 ORTHO05D010601 1.6e-40 170.6 282 43.3
Actinidia03741 Actinidia chinensis HOM05D008415 ORTHO05D010601 5.1e-39 165.6 240 47.5
CSS0041118 Camellia sinensis var. sinensis HOM05D008415 ORTHO05D010601 9.7e-38 161.4 266 42.9
Sed0001336 Sechium edule HOM05D008415 ORTHO05D010601 2.2e-37 160.2 243 45.3
Lj3g0013437 Lotus japonicus HOM05D008415 ORTHO05D010601 2.8e-37 159.8 264 39.0
Eucgr.J00943 Eucalyptus grandis HOM05D008415 ORTHO05D010601 4.8e-37 159.1 306 39.9
MELO3C025762.2 Cucumis melo HOM05D008415 ORTHO05D010601 1.1e-36 157.9 225 47.6
arahy.Tifrunner.gnm1.ann1.C7LIDW Arachis hypogaea HOM05D008415 ORTHO05D010601 9.0e-36 154.8 253 42.7
arahy.Tifrunner.gnm1.ann1.TY33PY Arachis hypogaea HOM05D008415 ORTHO05D010601 9.0e-36 154.8 253 42.7
CsaV3_6G021730 Cucumis sativus L. HOM05D008415 ORTHO05D010601 2.6e-35 153.3 278 42.4
Psat7g223880 Pisum sativum HOM05D008415 ORTHO05D010601 4.5e-35 152.5 241 41.1
ClCG02G021040 Citrullus lanatus HOM05D008415 ORTHO05D010601 1.0e-34 151.4 228 46.5
Lalb_Chr19g0137361 Lupinus albus HOM05D008415 ORTHO05D010601 1.3e-34 151.0 243 41.6
TAR633G1891 Trochodendron aralioides HOM05D008415 ORTHO05D010601 2.2e-34 150.2 285 39.3
Glyma.12G070700 Glycine max HOM05D008415 ORTHO05D010601 8.5e-34 148.3 233 44.2
Haze_23892 Corylus avellana HOM05D008415 ORTHO05D010601 5.7e-30 135.6 228 43.9
Hma1.2p1_2585F.1_g324920 Hydrangea macrophylla HOM05D008415 ORTHO05D010601 7.4e-30 135.2 154 53.2
Hma1.2p1_1931F.1_g307990 Hydrangea macrophylla HOM05D008415 ORTHO05D010601 9.7e-30 134.8 154 53.2
HanXRQChr14g0445691 Helianthus annuus HOM05D008415 ORTHO05D010601 1.3e-29 134.4 239 40.6
Ca_19250_v3 Cicer arietinum L. HOM05D008415 ORTHO05D010601 1.8e-28 130.6 112 57.1
CSS0005479 Camellia sinensis var. sinensis HOM05D008415 ORTHO05D010601 2.4e-28 130.2 200 47.5
Glyma.11G154841 Glycine max HOM05D008415 ORTHO05D010601 2.4e-28 130.2 227 39.6
VMungo1127G1728 Vigna mungo HOM05D008415 ORTHO05D010601 4.5e-27 125.9 200 42.0
Medtr4g060050 Medicago truncatula HOM05D008415 ORTHO05D010601 1.1e-25 121.3 191 44.5
CANSAT54G1687 Cannabis sativa HOM05D008415 ORTHO05D010601 1.4e-23 114.4 231 35.5
Phvul.011G073700 Phaseolus vulgaris HOM05D008415 ORTHO05D010601 2.0e-22 110.5 77 64.9
Cc07_g02980 Coffea canephora HOM05D008415 ORTHO05D010601 4.4e-22 109.4 121 50.4
Aqoxy2G01080 Aquilegia oxysepala HOM05D008415 ORTHO05D010601 9.1e-20 101.7 95 51.6
CiPaw.14G078500 Carya illinoinensis HOM05D008415 ORTHO05D010601 1.2e-19 101.3 105 57.1
Potri.016G129250 Populus trichocarpa HOM05D008415 ORTHO05D010601 1.3e-18 97.8 250 34.8
TPR.G15532 Trifolium pratense HOM05D008415 ORTHO05D010601 1.1e-14 84.7 126 44.4
Os03g0288900 Oryza sativa ssp. japonica HOM05D008415 ORTHO05D010601 1.5e-14 84.3 124 43.5
SEGI_01090 Sequoiadendron giganteum HOM05D005535 ORTHO05D006753 3.5e-11 73.2 276 27.2
Nitab4.5_0000269g0110 Nicotiana tabacum HOM05D005535 ORTHO05D006753 4.5e-11 72.8 123 36.6
Hma1.2p1_0104F.1_g050150 Hydrangea macrophylla HOM05D005535 ORTHO05D006753 1.0e-10 71.6 106 37.7
Lj9A460T58 Lonicera japonica HOM05D005535 ORTHO05D006753 1.0e-10 71.6 195 31.3
PGSC0003DMG400033073 Solanum tuberosum HOM05D005535 ORTHO05D006753 1.3e-10 71.2 154 32.5
TWI60G0583 Tripterygium wilfordii HOM05D005535 ORTHO05D006753 1.3e-10 71.2 111 41.4
Sc10g0009960 Simmondsia chinensis HOM05D005535 ORTHO05D006753 1.7e-10 70.9 113 37.2
Hma1.2p1_1617F.1_g293810 Hydrangea macrophylla HOM05D005535 ORTHO05D006753 2.2e-10 70.5 199 32.2
Nn3g17153 Nelumbo nucifera HOM05D005535 ORTHO05D006753 2.2e-10 70.5 200 32.0
Potri.015G063700 Populus trichocarpa HOM05D005535 ORTHO05D006753 3.8e-10 69.7 190 32.1
Nitab4.5_0004931g0020 Nicotiana tabacum HOM05D005535 ORTHO05D006753 8.5e-10 68.6 195 29.2
Rhsim08G0158400 Rhododendron simsii HOM05D005535 ORTHO05D006753 8.5e-10 68.6 224 29.9
Lj5A114T27 Lonicera japonica HOM05D005535 ORTHO05D006753 1.1e-09 68.2 176 34.1
Phvul.003G191800 Phaseolus vulgaris HOM05D005535 ORTHO05D006753 1.1e-09 68.2 109 41.3
QL10p015851 Quercus lobata HOM05D005535 ORTHO05D006753 1.1e-09 68.2 221 29.0
CANSAT80G1786 Cannabis sativa HOM05D005535 ORTHO05D006753 1.5e-09 67.8 230 30.4
TAR371G0260 Trochodendron aralioides HOM05D005535 ORTHO05D006753 1.5e-09 67.8 90 41.1
PSO832G1146 Papaver somniferum HOM05D005535 ORTHO05D006753 4.2e-09 66.2 168 31.0
vmacro16564 Vaccinium macrocarpon HOM05D005535 ORTHO05D006753 4.2e-09 66.2 200 30.5
Dinv19929 Davidia involucrata HOM05D005535 ORTHO05D006753 5.5e-09 65.9 189 29.6
FAN08G2745 Fragaria x ananassa HOM05D005535 ORTHO05D006753 5.5e-09 65.9 111 39.6
CSS0007804 Camellia sinensis var. sinensis HOM05D005535 ORTHO05D006753 9.4e-09 65.1 219 30.6
Ca_21840_v3 Cicer arietinum L. HOM05D005535 ORTHO05D006753 9.4e-09 65.1 221 29.9
MELO3C017158.2 Cucumis melo HOM05D005535 ORTHO05D006753 9.4e-09 65.1 243 30.5
Psat4g052400 Pisum sativum HOM05D005535 ORTHO05D006753 9.4e-09 65.1 217 28.1
Aqoxy3G00718 Aquilegia oxysepala HOM05D005535 ORTHO05D006753 1.2e-08 64.7 193 32.6
CSS0007998 Camellia sinensis var. sinensis HOM05D005535 ORTHO05D006753 1.2e-08 64.7 225 29.3
FAN13G1299 Fragaria x ananassa HOM05D005535 ORTHO05D006753 1.2e-08 64.7 97 43.3
RcHm_v2.0_Chr7g0180761 Rosa chinensis HOM05D005535 ORTHO05D006753 1.2e-08 64.7 189 32.3
Sabra15G0089300 Salix brachista HOM05D005535 ORTHO05D006753 1.2e-08 64.7 201 32.8
Dinv38677 Davidia involucrata HOM05D005535 ORTHO05D006753 1.6e-08 64.3 205 31.2
Os06g0589500 Oryza sativa ssp. japonica HOM05D005535 ORTHO05D006753 1.6e-08 64.3 78 41.0
Solyc06g070970.3 Solanum lycopersicum HOM05D005535 ORTHO05D006753 1.6e-08 64.3 205 30.2
HPP92_024074 Vanilla planifolia HOM05D005535 ORTHO05D006753 1.6e-08 64.3 217 30.9
Actinidia04914 Actinidia chinensis HOM05D005535 ORTHO05D006753 2.1e-08 63.9 204 32.4
Actinidia34981 Actinidia chinensis HOM05D005535 ORTHO05D006753 2.1e-08 63.9 217 30.0
Ah.02g113290 Amaranthus hybridus HOM05D005535 ORTHO05D006753 2.1e-08 63.9 207 27.1
Actinidia37646 Actinidia chinensis HOM05D005535 ORTHO05D006753 2.7e-08 63.5 219 29.2
Peaxi162Scf00009g00219 Petunia axillaris HOM05D005535 ORTHO05D006753 2.7e-08 63.5 224 29.0
ClCG06G016340 Citrullus lanatus HOM05D005535 ORTHO05D006753 3.6e-08 63.2 242 28.9
PSO591G0334 Papaver somniferum HOM05D005535 ORTHO05D006753 3.6e-08 63.2 129 34.9
Glyma.17G098100 Glycine max HOM05D005535 ORTHO05D006753 4.7e-08 62.8 194 29.9
Peaxi162Scf00013g00129 Petunia axillaris HOM05D005535 ORTHO05D006753 4.7e-08 62.8 173 29.5
Lj1g0015301 Lotus japonicus HOM05D005535 ORTHO05D006753 6.1e-08 62.4 234 26.9
BcaB02g09657 Brassica carinata HOM05D005535 ORTHO05D006753 8.0e-08 62.0 140 29.3
CsaV3_1G002190 Cucumis sativus L. HOM05D005535 ORTHO05D006753 8.0e-08 62.0 228 31.1
Gohir.D12G178800 Gossypium hirsutum HOM05D005535 ORTHO05D006753 8.0e-08 62.0 224 30.4
Aqoxy3G03311 Aquilegia oxysepala HOM05D005535 ORTHO05D006753 1.0e-07 61.6 173 31.8
SGA_v2.0_scaffold56G20044 Striga asiatica HOM05D005535 ORTHO05D006753 1.0e-07 61.6 151 33.1
CAN.G628.33 Capsicum annuum HOM05D005535 ORTHO05D006753 1.4e-07 61.2 241 27.0
Sopen06g027240 Solanum pennellii HOM05D005535 ORTHO05D006753 1.4e-07 61.2 205 29.3
Zm00001eb277070 Zea mays HOM05D005535 ORTHO05D006753 1.4e-07 61.2 99 36.4
Eucgr.B00441 Eucalyptus grandis HOM05D005535 ORTHO05D006753 1.8e-07 60.8 130 33.8
TAR629G1161 Trochodendron aralioides HOM05D005535 ORTHO05D006753 1.8e-07 60.8 228 27.6
VMungo1215G1657 Vigna mungo HOM05D005535 ORTHO05D006753 1.8e-07 60.8 223 28.3
MSTRG.11394 Avicennia marina HOM05D005535 ORTHO05D006753 2.3e-07 60.5 190 32.1
AUR62021726 Chenopodium quinoa HOM05D005535 ORTHO05D006753 2.3e-07 60.5 236 28.8
FvH4_5g15300 Fragaria vesca HOM05D005535 ORTHO05D006753 2.3e-07 60.5 114 37.7
FAN18G1286 Fragaria x ananassa HOM05D005535 ORTHO05D006753 2.3e-07 60.5 114 37.7
Glyma.05G028700 Glycine max HOM05D005535 ORTHO05D006753 2.3e-07 60.5 210 31.9
EL10Ac5g10956 Beta vulgaris HOM05D005535 ORTHO05D006753 3.0e-07 60.1 182 31.3
Glyma.04G173200 Glycine max HOM05D005535 ORTHO05D006753 3.0e-07 60.1 210 28.6
TPR.G27376 Trifolium pratense HOM05D005535 ORTHO05D006753 3.0e-07 60.1 197 30.5
unitig_26.g9639 Utricularia gibba HOM05D005535 ORTHO05D006753 3.0e-07 60.1 215 31.2
Thhalv10004313m.g Eutrema salsugineum HOM05D005535 ORTHO05D006753 4.0e-07 59.7 204 27.5
MD14G1196400 Malus domestica HOM05D005535 ORTHO05D006753 4.0e-07 59.7 197 31.5
Prupe.5G188200 Prunus persica HOM05D005535 ORTHO05D006753 4.0e-07 59.7 215 29.8
SalBow5G2281 Salvia bowleyana HOM05D005535 ORTHO05D006753 4.0e-07 59.7 218 29.8
Actinidia19054 Actinidia chinensis HOM05D005535 ORTHO05D006753 5.2e-07 59.3 235 29.4
FAN04G1197 Fragaria x ananassa HOM05D005535 ORTHO05D006753 6.7e-07 58.9 114 39.5
Sed0009946 Sechium edule HOM05D005535 ORTHO05D006753 6.7e-07 58.9 243 27.2
PGSC0003DMG401018143 Solanum tuberosum HOM05D005535 ORTHO05D006753 6.7e-07 58.9 225 27.6
Lsat_1_v5_gn_5_19040 Lactuca sativa HOM05D005535 ORTHO05D006753 8.8e-07 58.5 74 41.9
MBI01_g12912_MAGBIO Magnolia biondii HOM05D005535 ORTHO05D006753 8.8e-07 58.5 247 25.9
Sp2g25720 Schrenkiella parvula HOM05D005535 ORTHO05D006753 8.8e-07 58.5 239 28.0
Sopen03g032160 Solanum pennellii HOM05D005535 ORTHO05D006753 8.8e-07 58.5 178 28.7
Thecc.03G081300 Theobroma cacao HOM05D005535 ORTHO05D006753 8.8e-07 58.5 220 26.4
Zm00001eb386190 Zea mays HOM05D005535 ORTHO05D006753 8.8e-07 58.5 171 29.8
Atru.chr9.2302 Acer truncatum HOM05D005535 ORTHO05D006753 1.2e-06 58.2 241 30.7
BraA06t25881Z Brassica rapa HOM05D005535 ORTHO05D006753 1.2e-06 58.2 211 28.9
Cfa018977 Carpinus fangiana HOM05D005535 ORTHO05D006753 1.2e-06 58.2 214 28.5
Duzib205G0302 Durio zibethinus HOM05D005535 ORTHO05D006753 1.2e-06 58.2 205 29.3
Gorai.008G191600 Gossypium raimondii HOM05D005535 ORTHO05D006753 1.2e-06 58.2 233 29.2
Nitab4.5_0004785g0010 Nicotiana tabacum HOM05D005535 ORTHO05D006753 1.2e-06 58.2 228 27.2
Hund09363 Selenicereus undatus HOM05D005535 ORTHO05D006753 1.2e-06 58.2 233 27.9
A06p29250 Brassica napus HOM05D005535 ORTHO05D006753 1.5e-06 57.8 211 28.4
SGA_v2.0_scaffold162G37926 Striga asiatica HOM05D005535 ORTHO05D006753 1.5e-06 57.8 192 30.2
Gohir.A12G175600 Gossypium hirsutum HOM05D005535 ORTHO05D006753 2.0e-06 57.4 224 29.0
Lj4g0008602 Lotus japonicus HOM05D005535 ORTHO05D006753 2.0e-06 57.4 230 25.7
Lalb_Chr12g0196771 Lupinus albus HOM05D005535 ORTHO05D006753 2.0e-06 57.4 239 28.5
Medtr4g108100 Medicago truncatula HOM05D005535 ORTHO05D006753 2.0e-06 57.4 214 27.1
SalBow5G0107 Salvia bowleyana HOM05D005535 ORTHO05D006753 2.0e-06 57.4 197 30.5
AUR62008371 Chenopodium quinoa HOM05D005535 ORTHO05D006753 2.6e-06 57.0 216 30.1
Cc04_g15390 Coffea canephora HOM05D005535 ORTHO05D006753 2.6e-06 57.0 217 29.5
Migut.I00138 Erythranthe guttata HOM05D005535 ORTHO05D006753 2.6e-06 57.0 134 33.6
Glyma.06G191000 Glycine max HOM05D005535 ORTHO05D006753 2.6e-06 57.0 208 26.9
TWI34G0031 Tripterygium wilfordii HOM05D005535 ORTHO05D006753 2.6e-06 57.0 168 29.8
Rhsim12G0158200 Rhododendron simsii HOM05D005535 ORTHO05D006753 3.3e-06 56.6 236 27.5
Phvul.009G189600 Phaseolus vulgaris HOM05D005535 ORTHO05D006753 4.4e-06 56.2 134 32.8
Solyc03g113090.3 Solanum lycopersicum HOM05D005535 ORTHO05D006753 4.4e-06 56.2 215 27.4
GSVIVG01008044001 Vitis vinifera HOM05D005535 ORTHO05D006753 4.4e-06 56.2 116 34.5
HanXRQChr05g0158021 Helianthus annuus HOM05D005535 ORTHO05D006753 5.7e-06 55.8 170 28.8
PSO478G1818 Papaver somniferum HOM05D005535 ORTHO05D006753 5.7e-06 55.8 192 30.2
BcaC01g02485 Brassica carinata HOM05D005535 ORTHO05D006753 7.5e-06 55.5 237 26.6
C03p64280 Brassica napus HOM05D005535 ORTHO05D006753 7.5e-06 55.5 237 26.6
BolC3t18683H Brassica oleracea HOM05D005535 ORTHO05D006753 7.5e-06 55.5 237 26.6
COL.COLO4_14041 Corchorus olitorius HOM05D005535 ORTHO05D006753 7.5e-06 55.5 219 26.5
ECA232G4425 Erigeron canadensis HOM05D005535 ORTHO05D006753 7.5e-06 55.5 208 27.4
Oeu006178.3 Olea europaea HOM05D005535 ORTHO05D006753 7.5e-06 55.5 220 28.6
Nitab4.5_0000785g0140 Nicotiana tabacum HOM05D005535 ORTHO05D006753 9.7e-06 55.1 226 27.4
VMungo1309G2126 Vigna mungo HOM05D005535 ORTHO05D006753 9.7e-06 55.1 134 32.8


User provided reference genes

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