Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Migut.D02110 Erythranthe guttata HOM05D004498 ORTHO05D005300 5.7e-300 1033.5 530 100.0
Migut.G01103 Erythranthe guttata HOM05D004498 ORTHO05D005300 1.1e-290 1002.7 532 97.4
QL09p005249 Quercus lobata HOM05D004498 ORTHO05D005300 1.3e-224 783.1 509 77.0
Potri.001G126200 Populus trichocarpa HOM05D004498 ORTHO05D005300 1.5e-223 779.6 514 75.7
Hma1.2p1_0432F.1_g151900 Hydrangea macrophylla HOM05D004498 ORTHO05D005300 3.3e-223 778.5 529 74.5
Manes.14G037200 Manihot esculenta HOM05D004498 ORTHO05D005300 3.7e-222 775.0 516 75.4
Cfa008145 Carpinus fangiana HOM05D004498 ORTHO05D005300 6.3e-222 774.2 518 75.5
CiPaw.03G020300 Carya illinoinensis HOM05D004498 ORTHO05D005300 3.1e-221 771.9 519 74.2
Ciclev10004737m.g Citrus clementina HOM05D004498 ORTHO05D005300 1.7e-219 766.1 512 75.0
Gorai.008G215300 Gossypium raimondii HOM05D004498 ORTHO05D005300 1.7e-219 766.1 529 74.1
Cc02_g04430 Coffea canephora HOM05D004498 ORTHO05D005300 6.5e-219 764.2 521 74.1
Gohir.D12G200100 Gossypium hirsutum HOM05D004498 ORTHO05D005300 6.5e-219 764.2 531 74.2
COL.COLO4_14097 Corchorus olitorius HOM05D004498 ORTHO05D005300 1.1e-218 763.5 529 72.8
TAR375G0984 Trochodendron aralioides HOM05D004498 ORTHO05D005300 1.9e-218 762.7 543 71.3
Solyc05g051630.4 Solanum lycopersicum HOM05D004498 ORTHO05D005300 3.2e-218 761.9 524 75.4
Atru.chr1.817 Acer truncatum HOM05D004498 ORTHO05D005300 1.2e-217 760.0 525 73.0
Aqoxy3G03912 Aquilegia oxysepala HOM05D004498 ORTHO05D005300 1.8e-216 756.1 531 71.9
CAN.G937.4 Capsicum annuum HOM05D004498 ORTHO05D005300 1.1e-215 753.4 524 73.7
Glyma.09G230400 Glycine max HOM05D004498 ORTHO05D005300 4.1e-213 745.0 513 73.7
Actinidia24991 Actinidia chinensis HOM05D004498 ORTHO05D005300 5.3e-213 744.6 504 74.6
Ca_02786_v3 Cicer arietinum L. HOM05D004498 ORTHO05D005300 9.1e-213 743.8 513 73.9
Thecc.03G153100 Theobroma cacao HOM05D004498 ORTHO05D005300 1.5e-212 743.0 513 72.9
Medtr4g036550 Medicago truncatula HOM05D004498 ORTHO05D005300 5.9e-212 741.1 513 73.3
ECA233G4878 Erigeron canadensis HOM05D004498 ORTHO05D005300 7.7e-212 740.7 514 72.6
Phvul.011G007100 Phaseolus vulgaris HOM05D004498 ORTHO05D005300 2.2e-211 739.2 513 71.3
THA.LOC104819414 Tarenaya hassleriana HOM05D004498 ORTHO05D005300 5.0e-211 738.0 517 71.4
Rhsim03G0165600 Rhododendron simsii HOM05D004498 ORTHO05D005300 1.9e-210 736.1 543 69.4
Lj3g0015680 Lotus japonicus HOM05D004498 ORTHO05D005300 2.5e-210 735.7 514 72.8
Sp6g35240 Schrenkiella parvula HOM05D004498 ORTHO05D005300 5.5e-210 734.6 512 71.5
Thhalv10013248m.g Eutrema salsugineum HOM05D004498 ORTHO05D005300 9.4e-210 733.8 518 72.2
Sabra01G0097300 Salix brachista HOM05D004498 ORTHO05D005300 1.6e-209 733.0 588 64.8
Sed0003630 Sechium edule HOM05D004498 ORTHO05D005300 4.7e-209 731.5 527 69.8
Lalb_Chr04g0258171 Lupinus albus HOM05D004498 ORTHO05D005300 1.8e-208 729.6 516 71.9
TPR.G3665 Trifolium pratense HOM05D004498 ORTHO05D005300 2.3e-208 729.2 513 72.1
Psat6g116600 Pisum sativum HOM05D004498 ORTHO05D005300 3.0e-208 728.8 513 72.3
Migut.G01144 Erythranthe guttata HOM05D004498 ORTHO05D005300 8.8e-208 727.2 386 98.2
Sc15g0000230 Simmondsia chinensis HOM05D004498 ORTHO05D005300 1.5e-207 726.5 530 67.9
Eucgr.G03077 Eucalyptus grandis HOM05D004498 ORTHO05D005300 2.0e-207 726.1 514 70.0
Carub.0006s0661 Capsella rubella HOM05D004498 ORTHO05D005300 7.4e-207 724.2 510 70.6
PSO210G0611 Papaver somniferum HOM05D004498 ORTHO05D005300 7.4e-207 724.2 531 69.9
Psat6g142360 Pisum sativum HOM05D004498 ORTHO05D005300 7.4e-207 724.2 513 72.1
BcaC03g13193 Brassica carinata HOM05D004498 ORTHO05D005300 3.1e-205 718.8 513 70.8
A10p29360 Brassica napus HOM05D004498 ORTHO05D005300 3.1e-205 718.8 517 71.2
BcaC06g32495 Brassica carinata HOM05D004498 ORTHO05D005300 5.3e-205 718.0 516 71.1
PSO210G1345 Papaver somniferum HOM05D004498 ORTHO05D005300 5.3e-205 718.0 531 69.3
AL6G17950 Arabidopsis lyrata HOM05D004498 ORTHO05D005300 7.0e-205 717.6 510 70.6
BcaB05g21603 Brassica carinata HOM05D004498 ORTHO05D005300 9.1e-205 717.2 513 70.6
BraA10t44979Z Brassica rapa HOM05D004498 ORTHO05D005300 2.0e-204 716.1 517 71.0
SalBow7G0508 Salvia bowleyana HOM05D004498 ORTHO05D005300 2.0e-204 716.1 428 86.0
C02p03220 Brassica napus HOM05D004498 ORTHO05D005300 2.7e-201 705.7 509 70.1
CsaV3_4G004040 Cucumis sativus L. HOM05D004498 ORTHO05D005300 3.6e-201 705.3 513 68.8
AT5G07630 Arabidopsis thaliana HOM05D004498 ORTHO05D005300 8.8e-200 700.7 521 66.6
Gohir.A12G197600 Gossypium hirsutum HOM05D004498 ORTHO05D005300 2.8e-198 695.7 497 73.0
SGA_v2.0_scaffold115G32141 Striga asiatica HOM05D004498 ORTHO05D005300 4.8e-198 694.9 572 67.7
Dinv16848 Davidia involucrata HOM05D004498 ORTHO05D005300 1.8e-197 693.0 514 69.8
Glyma.12G006200 Glycine max HOM05D004498 ORTHO05D005300 5.3e-197 691.4 471 74.9
MD11G1042200 Malus domestica HOM05D004498 ORTHO05D005300 3.5e-196 688.7 516 68.6
Prupe.6G033300 Prunus persica HOM05D004498 ORTHO05D005300 5.9e-196 688.0 515 68.3
HanXRQChr05g0142551 Helianthus annuus HOM05D004498 ORTHO05D005300 6.5e-195 684.5 508 70.3
TWI23G0902 Tripterygium wilfordii HOM05D004498 ORTHO05D005300 1.9e-194 682.9 473 72.7
ClCG07G016840 Citrullus lanatus HOM05D004498 ORTHO05D005300 8.8e-192 674.1 484 70.0
BraA02t04927Z Brassica rapa HOM05D004498 ORTHO05D005300 2.0e-191 672.9 617 58.3
BolC2t06286H Brassica oleracea HOM05D004498 ORTHO05D005300 7.5e-191 671.0 628 58.1
Lj8A44G33 Lonicera japonica HOM05D004498 ORTHO05D005300 9.1e-189 664.1 448 77.0
Nitab4.5_0001187g0110 Nicotiana tabacum HOM05D004498 ORTHO05D005300 1.0e-187 660.6 509 69.0
CSS0042388 Camellia sinensis var. sinensis HOM05D004498 ORTHO05D005300 1.1e-186 657.1 451 73.2
Aa31LG3G18790 Aethionema arabicum HOM05D004498 ORTHO05D005300 1.9e-186 656.4 510 65.7
Manes.06G133200 Manihot esculenta HOM05D004498 ORTHO05D005300 5.5e-186 654.8 527 65.7
Carub.0003s0947 Capsella rubella HOM05D004498 ORTHO05D005300 9.5e-186 654.1 514 66.0
Duzib084G1021 Durio zibethinus HOM05D004498 ORTHO05D005300 3.0e-184 649.0 528 65.5
DCAR_009449 Daucus carota HOM05D004498 ORTHO05D005300 7.5e-183 644.4 514 63.8
FvH4_3g41750 Fragaria vesca HOM05D004498 ORTHO05D005300 9.8e-183 644.0 542 62.4
GSVIVG01014038001 Vitis vinifera HOM05D004498 ORTHO05D005300 9.8e-183 644.0 521 63.3
RcHm_v2.0_Chr5g0074831 Rosa chinensis HOM05D004498 ORTHO05D005300 3.7e-182 642.1 546 62.5
Ah.15g094140 Amaranthus hybridus HOM05D004498 ORTHO05D005300 8.3e-182 641.0 548 61.7
AL3G21620 Arabidopsis lyrata HOM05D004498 ORTHO05D005300 1.2e-180 637.1 483 68.7
FAN11G1420 Fragaria x ananassa HOM05D004498 ORTHO05D005300 5.0e-179 631.7 557 60.5
Hund20838 Selenicereus undatus HOM05D004498 ORTHO05D005300 6.8e-176 621.3 500 65.0
PGR119G0143 Punica granatum HOM05D004498 ORTHO05D005300 3.4e-175 619.0 457 70.7
vmacro22807 Vaccinium macrocarpon HOM05D004498 ORTHO05D005300 9.8e-175 617.5 508 65.9
Sopen05g030080 Solanum pennellii HOM05D004498 ORTHO05D005300 4.6e-172 608.6 426 74.4
Nn1g09651 Nelumbo nucifera HOM05D004498 ORTHO05D005300 4.3e-170 602.1 422 74.2
Lsat_1_v5_gn_8_10281 Lactuca sativa HOM05D004498 ORTHO05D005300 5.6e-170 601.7 442 68.3
FAN16G2392 Fragaria x ananassa HOM05D004498 ORTHO05D005300 1.4e-168 597.0 542 59.6
AUR62009833 Chenopodium quinoa HOM05D004498 ORTHO05D005300 3.5e-164 582.4 422 68.5
ATR0745G086 Amborella trichopoda HOM05D004498 ORTHO05D005300 6.6e-163 578.2 523 58.5
arahy.Tifrunner.gnm1.ann1.LBI7WJ Arachis hypogaea HOM05D004498 ORTHO05D005300 1.5e-162 577.0 419 70.6
MELO3C017661.2 Cucumis melo HOM05D004498 ORTHO05D005300 3.3e-162 575.9 402 72.1
FAN25G1514 Fragaria x ananassa HOM05D004498 ORTHO05D005300 5.6e-162 575.1 580 55.3
Migut.A00970 Erythranthe guttata HOM05D004498 ORTHO05D005300 6.2e-161 571.6 300 98.0
SGA_v2.0_scaffold92G28289 Striga asiatica HOM05D004498 ORTHO05D005300 1.3e-158 563.9 388 76.5
EL10Ac7g16351 Beta vulgaris HOM05D004498 ORTHO05D005300 4.1e-157 558.9 586 53.8
unitig_578.g16611 Utricularia gibba HOM05D004498 ORTHO05D005300 1.6e-156 557.0 464 61.9
Peaxi162Scf00167g00733 Petunia axillaris HOM05D004498 ORTHO05D005300 2.7e-156 556.2 423 70.0
arahy.Tifrunner.gnm1.ann1.V9VPQR Arachis hypogaea HOM05D004498 ORTHO05D005300 3.3e-154 549.3 448 64.5
HPP92_003455 Vanilla planifolia HOM05D004498 ORTHO05D005300 5.8e-151 538.5 511 56.2
SHI13988 Sapria himalayana HOM05D004498 ORTHO05D005300 1.7e-147 526.9 489 57.7
Dinv06575 Davidia involucrata HOM05D004498 ORTHO05D005300 1.5e-143 513.8 400 69.8
FAN21G3639 Fragaria x ananassa HOM05D004498 ORTHO05D005300 3.8e-142 509.2 460 59.6
Nitab4.5_0002764g0030 Nicotiana tabacum HOM05D004498 ORTHO05D005300 1.7e-139 500.4 426 64.8
Zm00001eb105090 Zea mays HOM05D004498 ORTHO05D005300 1.6e-137 493.8 466 56.0
BolC9t59715H Brassica oleracea HOM05D004498 ORTHO05D005300 3.1e-136 489.6 475 57.7
C09p69720 Brassica napus HOM05D004498 ORTHO05D005300 5.4e-133 478.8 475 56.2
Oeu022469.1 Olea europaea HOM05D004498 ORTHO05D005300 9.3e-133 478.0 307 78.5
Mapoly0124s0016 Marchantia polymorpha HOM05D004498 ORTHO05D005300 2.5e-122 443.4 530 47.4
GSVIVG01037114001 Vitis vinifera HOM05D004498 ORTHO05D005300 3.5e-116 422.9 392 59.4
Rhsim07G0010200 Rhododendron simsii HOM05D004498 ORTHO05D005300 1.9e-114 417.2 341 64.8
Pp3c18_8280 Physcomitrium patens HOM05D004498 ORTHO05D005300 3.4e-111 406.4 479 46.1
SMO200G0031 Selaginella moellendorffii HOM05D004498 ORTHO05D005300 8.7e-107 391.7 509 45.0
CARHR205520 Cardamine hirsuta HOM05D004498 ORTHO05D005300 3.2e-101 373.2 253 73.5
Migut.G01109 Erythranthe guttata HOM05D004498 ORTHO05D005300 8.8e-99 365.2 191 97.9
AagrBONN_evm.TU.Sc2ySwM_362.1167 Anthoceros agrestis HOM05D004498 ORTHO05D005300 2.6e-95 353.6 441 46.5
Nitab4.5_0000818g0240 Nicotiana tabacum HOM05D004498 ORTHO05D005300 1.9e-93 347.4 323 60.7
arahy.Tifrunner.gnm1.ann1.XAT8RN Arachis hypogaea HOM05D004498 ORTHO05D005300 4.4e-82 309.7 233 66.1
Actinidia13585 Actinidia chinensis HOM05D004498 ORTHO05D005300 1.3e-78 298.1 198 74.7
AUR62038145 Chenopodium quinoa HOM05D004498 ORTHO05D005300 1.9e-77 294.3 370 48.6
Nitab4.5_0003647g0080 Nicotiana tabacum HOM05D004498 ORTHO05D005300 4.0e-75 286.6 463 41.3
Oeu042546.1 Olea europaea HOM05D004498 ORTHO05D005300 2.9e-70 270.4 220 67.7
AagrBONN_evm.TU.Sc2ySwM_362.1160 Anthoceros agrestis HOM05D004498 ORTHO05D005300 4.2e-69 266.5 435 41.1
CDE02G4122 Ceratophyllum demersum HOM05D004498 ORTHO05D005300 4.7e-68 263.1 224 66.1
BcaC06g32419 Brassica carinata HOM05D004498 ORTHO05D005300 1.0e-67 261.9 410 41.2
Cre11.g467726 Chlamydomonas reinhardtii HOM05D004498 ORTHO05D005300 2.7e-63 247.3 661 30.6
SGA_v2.0_scaffold4035G54420 Striga asiatica HOM05D004498 ORTHO05D005300 1.3e-54 218.4 150 75.3
BcaNung06188 Brassica carinata HOM05D004498 ORTHO05D005300 3.0e-54 217.2 162 65.4
SEGI_20056 Sequoiadendron giganteum HOM05D004498 ORTHO05D005300 5.2e-51 206.5 198 56.6
arahy.Tifrunner.gnm1.ann1.BI5KXL Arachis hypogaea HOM05D004498 ORTHO05D005300 4.1e-48 196.8 190 54.7
MCO14G174 Micromonas commoda HOM05D004498 ORTHO05D005300 6.0e-47 193.0 430 34.7
Os07g0486100 Oryza sativa ssp. japonica HOM05D004498 ORTHO05D005300 1.6e-39 168.3 201 51.2
Sabra03G0074300 Salix brachista HOM05D004498 ORTHO05D005300 7.8e-39 166.0 161 58.4
PGSC0003DMG401007235 Solanum tuberosum HOM05D004498 ORTHO05D005300 5.6e-37 159.8 96 87.5
SEGI_28281 Sequoiadendron giganteum HOM05D004498 ORTHO05D005300 3.8e-33 147.1 123 56.1
SEGI_08016 Sequoiadendron giganteum HOM05D004498 ORTHO05D005300 5.4e-32 143.3 153 49.7
SEGI_20600 Sequoiadendron giganteum HOM05D004498 ORTHO05D005300 5.4e-32 143.3 153 49.7
Nitab4.5_0002764g0040 Nicotiana tabacum HOM05D004498 ORTHO05D005300 2.7e-31 141.0 110 67.3
CSS0024530 Camellia sinensis var. sinensis HOM05D004498 ORTHO05D005300 6.6e-30 136.3 87 78.2
Lj3g0020155 Lotus japonicus HOM05D004498 ORTHO05D005300 1.8e-27 128.3 100 68.0
SalBow7G0435 Salvia bowleyana HOM05D004498 ORTHO05D005300 4.4e-26 123.6 97 59.8
PGSC0003DMG402007235 Solanum tuberosum HOM05D004498 ORTHO05D005300 4.4e-26 123.6 97 59.8
PRCOL_00001376 Prasinoderma coloniale HOM05D004498 ORTHO05D005300 5.8e-26 123.2 508 26.8
Nn1g09635 Nelumbo nucifera HOM05D004498 ORTHO05D005300 1.3e-25 122.1 97 57.7
FvH4_1g27600 Fragaria vesca HOM05D004498 ORTHO05D005300 1.6e-23 115.2 98 63.3
SalBow8G0163 Salvia bowleyana HOM05D004498 ORTHO05D005300 9.6e-21 105.9 63 90.5
SalBow8G4260 Salvia bowleyana HOM05D004498 ORTHO05D005300 9.6e-21 105.9 63 90.5
CARHR084780 Cardamine hirsuta HOM05D004498 ORTHO05D005300 6.2e-20 103.2 64 78.1
Potri.003G107501 Populus trichocarpa HOM05D004498 ORTHO05D005300 3.1e-19 100.9 67 76.1
vmacro22806 Vaccinium macrocarpon HOM05D004498 ORTHO05D005300 3.1e-19 100.9 78 53.8
Prupe.6G034800 Prunus persica HOM05D004498 ORTHO05D005300 2.2e-17 94.7 56 83.9
Rhsim07G0010100 Rhododendron simsii HOM05D004498 ORTHO05D005300 1.4e-16 92.0 238 34.0
PGR142G0681 Punica granatum HOM05D004498 ORTHO05D005300 3.0e-14 84.3 80 58.8
CSS0021614 Camellia sinensis var. sinensis HOM05D004498 ORTHO05D005300 1.5e-13 82.0 55 70.9
CSS0021260 Camellia sinensis var. sinensis HOM05D004498 ORTHO05D005300 3.3e-13 80.9 50 80.0
Nitab4.5_0003647g0090 Nicotiana tabacum HOM05D004498 ORTHO05D005300 3.7e-12 77.4 48 75.0
Cfa025118 Carpinus fangiana HOM05D004498 ORTHO05D005300 1.3e-09 68.9 195 32.3
GSVIVG01037115001 Vitis vinifera HOM05D004498 ORTHO05D005300 6.0e-07 60.1 57 50.9


User provided reference genes

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