Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Migut.D02083 Erythranthe guttata HOM05D005444 ORTHO05D006773 6.1e-152 540.8 276 100.0
SalBow3G1488 Salvia bowleyana HOM05D005444 ORTHO05D006773 1.5e-113 413.3 325 69.2
Actinidia34411 Actinidia chinensis HOM05D005444 ORTHO05D006773 8.9e-111 404.1 288 74.3
Nitab4.5_0000463g0210 Nicotiana tabacum HOM05D005444 ORTHO05D006773 4.6e-107 391.7 291 71.1
Dinv04178 Davidia involucrata HOM05D005444 ORTHO05D006773 1.0e-106 390.6 282 72.7
CSS0026048 Camellia sinensis var. sinensis HOM05D005444 ORTHO05D006773 6.6e-106 387.9 288 72.6
Peaxi162Scf00774g00121 Petunia axillaris HOM05D005444 ORTHO05D006773 1.5e-105 386.7 292 70.2
CAN.G394.63 Capsicum annuum HOM05D005444 ORTHO05D006773 4.3e-105 385.2 281 70.1
Nitab4.5_0001326g0170 Nicotiana tabacum HOM05D005444 ORTHO05D006773 6.8e-103 377.9 316 65.5
Haze_24114 Corylus avellana HOM05D005444 ORTHO05D006773 2.0e-102 376.3 288 70.5
Cfa011517 Carpinus fangiana HOM05D005444 ORTHO05D006773 2.6e-102 375.9 288 70.5
Solyc06g076250.4 Solanum lycopersicum HOM05D005444 ORTHO05D006773 3.4e-102 375.6 281 69.0
Sopen06g032680 Solanum pennellii HOM05D005444 ORTHO05D006773 3.4e-102 375.6 281 69.0
Cc01_g13010 Coffea canephora HOM05D005444 ORTHO05D006773 5.8e-102 374.8 293 68.3
PGSC0003DMG401030323 Solanum tuberosum HOM05D005444 ORTHO05D006773 7.5e-102 374.4 281 69.4
Rhsim01G0229400 Rhododendron simsii HOM05D005444 ORTHO05D006773 1.3e-101 373.6 284 69.7
ECA236G0569 Erigeron canadensis HOM05D005444 ORTHO05D006773 2.2e-101 372.9 295 66.1
Lsat_1_v5_gn_8_73500 Lactuca sativa HOM05D005444 ORTHO05D006773 1.6e-99 366.7 292 66.4
Ciclev10028946m.g Citrus clementina HOM05D005444 ORTHO05D006773 3.5e-99 365.5 288 69.1
GSVIVG01024939001 Vitis vinifera HOM05D005444 ORTHO05D006773 5.0e-98 361.7 280 68.2
Atru.chr3.3946 Acer truncatum HOM05D005444 ORTHO05D006773 1.5e-97 360.1 295 65.1
Manes.02G131500 Manihot esculenta HOM05D005444 ORTHO05D006773 5.6e-97 358.2 295 65.1
HanXRQChr05g0135061 Helianthus annuus HOM05D005444 ORTHO05D006773 2.8e-96 355.9 293 64.2
Lj1A150T42 Lonicera japonica HOM05D005444 ORTHO05D006773 6.2e-96 354.8 255 73.7
CANSAT54G1668 Cannabis sativa HOM05D005444 ORTHO05D006773 8.1e-96 354.4 278 68.0
Sc21g0005860 Simmondsia chinensis HOM05D005444 ORTHO05D006773 5.2e-95 351.7 272 66.9
HanXRQChr06g0178811 Helianthus annuus HOM05D005444 ORTHO05D006773 6.8e-95 351.3 279 64.9
vmacro14541 Vaccinium macrocarpon HOM05D005444 ORTHO05D006773 9.9e-94 347.4 259 71.0
AUR62009560 Chenopodium quinoa HOM05D005444 ORTHO05D006773 6.4e-93 344.7 238 71.4
Potri.009G032300 Populus trichocarpa HOM05D005444 ORTHO05D006773 4.1e-92 342.0 291 62.5
MD11G1099800 Malus domestica HOM05D005444 ORTHO05D006773 7.1e-92 341.3 296 63.9
Potri.001G241400 Populus trichocarpa HOM05D005444 ORTHO05D006773 7.1e-92 341.3 296 65.2
MD03G1090200 Malus domestica HOM05D005444 ORTHO05D006773 1.2e-91 340.5 285 65.6
RcHm_v2.0_Chr5g0065341 Rosa chinensis HOM05D005444 ORTHO05D006773 1.2e-91 340.5 270 65.9
Eucgr.B02353 Eucalyptus grandis HOM05D005444 ORTHO05D006773 2.1e-91 339.7 242 68.6
Gorai.001G111300 Gossypium raimondii HOM05D005444 ORTHO05D006773 3.5e-91 339.0 241 68.9
Gohir.D07G103400 Gossypium hirsutum HOM05D005444 ORTHO05D006773 4.6e-91 338.6 241 68.9
FvH4_3g36480 Fragaria vesca HOM05D005444 ORTHO05D006773 6.0e-91 338.2 283 65.0
Actinidia23933 Actinidia chinensis HOM05D000001 ORTHO05D000003 1.0e-90 337.4 304 62.2
COL.COLO4_18527 Corchorus olitorius HOM05D005444 ORTHO05D006773 6.6e-90 334.7 291 60.1
FAN21G3395 Fragaria x ananassa HOM05D005444 ORTHO05D006773 6.6e-90 334.7 283 64.0
PSO339G5422 Papaver somniferum HOM05D005444 ORTHO05D006773 1.1e-89 334.0 236 69.9
QL01p031522 Quercus lobata HOM05D005444 ORTHO05D006773 1.5e-89 333.6 294 62.2
PSO063G3487 Papaver somniferum HOM05D005444 ORTHO05D006773 2.5e-89 332.8 236 69.5
Gohir.A07G098900 Gossypium hirsutum HOM05D005444 ORTHO05D006773 3.3e-89 332.4 241 67.6
Sabra09G0022900 Salix brachista HOM05D005444 ORTHO05D006773 2.1e-88 329.7 294 62.9
VMungo1127G0766 Vigna mungo HOM05D005444 ORTHO05D006773 3.6e-88 328.9 285 61.1
Lj3g0017515 Lotus japonicus HOM05D005444 ORTHO05D006773 8.1e-88 327.8 291 62.5
ATR0559G091 Amborella trichopoda HOM05D005444 ORTHO05D006773 1.1e-87 327.4 233 68.7
Sed0025445 Sechium edule HOM05D005444 ORTHO05D006773 1.4e-87 327.0 262 64.5
Glyma.12G062600 Glycine max HOM05D005444 ORTHO05D006773 1.8e-87 326.6 285 61.4
arahy.Tifrunner.gnm1.ann1.XH3YCC Arachis hypogaea HOM05D005444 ORTHO05D006773 6.8e-87 324.7 290 62.1
TWI79G0937 Tripterygium wilfordii HOM05D005444 ORTHO05D006773 6.8e-87 324.7 282 63.8
Oeu017397.1 Olea europaea HOM05D005444 ORTHO05D006773 8.9e-87 324.3 303 60.1
Phvul.011G063700 Phaseolus vulgaris HOM05D005444 ORTHO05D006773 1.2e-86 323.9 285 61.8
TAR633G2200 Trochodendron aralioides HOM05D005444 ORTHO05D006773 2.6e-86 322.8 271 65.3
arahy.Tifrunner.gnm1.ann1.3F7RX4 Arachis hypogaea HOM05D005444 ORTHO05D006773 3.4e-86 322.4 290 62.1
Lalb_Chr01g0003631 Lupinus albus HOM05D005444 ORTHO05D006773 4.4e-86 322.0 283 61.1
FAN16G3284 Fragaria x ananassa HOM05D005444 ORTHO05D006773 7.6e-86 321.2 320 57.8
THA.LOC104810774 Tarenaya hassleriana HOM05D005444 ORTHO05D006773 3.8e-85 318.9 291 60.1
AL8G35870 Arabidopsis lyrata HOM05D005444 ORTHO05D006773 4.9e-85 318.5 297 59.3
AT5G59400 Arabidopsis thaliana HOM05D005444 ORTHO05D006773 4.9e-85 318.5 297 59.3
TPR.G34263 Trifolium pratense HOM05D005444 ORTHO05D006773 4.9e-85 318.5 278 61.2
BcaB08g36261 Brassica carinata HOM05D005444 ORTHO05D006773 6.4e-85 318.2 298 58.1
Ca_01319_v3 Cicer arietinum L. HOM05D005444 ORTHO05D006773 1.1e-84 317.4 281 60.9
BraA10t43744Z Brassica rapa HOM05D005444 ORTHO05D006773 1.9e-84 316.6 302 57.9
Carub.0008s2007 Capsella rubella HOM05D005444 ORTHO05D006773 1.9e-84 316.6 297 59.3
Medtr2g097230 Medicago truncatula HOM05D005444 ORTHO05D006773 3.2e-84 315.8 278 61.5
A10p16600 Brassica napus HOM05D005444 ORTHO05D006773 5.4e-84 315.1 302 57.6
BcaC04g19778 Brassica carinata HOM05D005444 ORTHO05D006773 7.1e-84 314.7 302 57.6
C09p51810 Brassica napus HOM05D005444 ORTHO05D006773 7.1e-84 314.7 302 57.6
BolC9t58042H Brassica oleracea HOM05D005444 ORTHO05D006773 7.1e-84 314.7 302 57.6
Sp6g21080 Schrenkiella parvula HOM05D005444 ORTHO05D006773 1.2e-83 313.9 302 58.3
Aa31sc23G420 Aethionema arabicum HOM05D005444 ORTHO05D006773 1.6e-83 313.5 297 59.3
FAN11G0832 Fragaria x ananassa HOM05D005444 ORTHO05D006773 1.6e-83 313.5 324 56.8
Sabra16G0145900 Salix brachista HOM05D005444 ORTHO05D006773 1.6e-83 313.5 269 64.7
Glyma.15G037500 Glycine max HOM05D005444 ORTHO05D006773 2.7e-83 312.8 241 65.6
CsaV3_1G034350 Cucumis sativus L. HOM05D005444 ORTHO05D006773 1.3e-82 310.5 264 61.0
Hund04946 Selenicereus undatus HOM05D005444 ORTHO05D006773 3.0e-82 309.3 316 56.3
EL10Ac7g16033 Beta vulgaris HOM05D005444 ORTHO05D006773 6.6e-82 308.1 212 71.7
Glyma.13G336800 Glycine max HOM05D005444 ORTHO05D006773 2.5e-81 306.2 276 58.3
arahy.Tifrunner.gnm1.ann1.9NI65Y Arachis hypogaea HOM05D005444 ORTHO05D006773 4.3e-81 305.4 257 63.4
arahy.Tifrunner.gnm1.ann1.T6ZDSA Arachis hypogaea HOM05D005444 ORTHO05D006773 4.3e-81 305.4 257 63.4
Phvul.L006243 Phaseolus vulgaris HOM05D005444 ORTHO05D006773 5.6e-81 305.1 237 64.1
Cpa.g.sc81.131 Carica papaya HOM05D005444 ORTHO05D006773 3.1e-79 299.3 282 60.6
ClCG03G001420 Citrullus lanatus HOM05D005444 ORTHO05D006773 4.0e-79 298.9 300 54.7
PGR102G1676 Punica granatum HOM05D005444 ORTHO05D006773 2.6e-78 296.2 295 57.6
Dinv17019 Davidia involucrata HOM05D005444 ORTHO05D006773 5.8e-78 295.0 249 66.3
Dinv42967 Davidia involucrata HOM05D005444 ORTHO05D006773 5.8e-78 295.0 249 66.3
Dinv43132 Davidia involucrata HOM05D005444 ORTHO05D006773 5.8e-78 295.0 249 66.3
CDE04G2637 Ceratophyllum demersum HOM05D005444 ORTHO05D006773 3.8e-77 292.4 236 61.4
CDE09G1090 Ceratophyllum demersum HOM05D005444 ORTHO05D006773 5.4e-76 288.5 287 57.5
AUR62001772 Chenopodium quinoa HOM05D005444 ORTHO05D006773 2.3e-74 283.1 286 55.9
VMungo1080G1107 Vigna mungo HOM05D000758 ORTHO05D002867 3.9e-74 282.3 285 55.4
CiPaw.13G092700 Carya illinoinensis HOM05D005444 ORTHO05D006773 8.7e-74 281.2 220 70.9
Thecc.09G320000 Theobroma cacao HOM05D005444 ORTHO05D006773 1.1e-73 280.8 293 54.9
SEGI_38540 Sequoiadendron giganteum HOM05D005444 ORTHO05D006773 1.9e-73 280.0 230 61.3
FAN25G3546 Fragaria x ananassa HOM05D005444 ORTHO05D006773 1.3e-72 277.3 263 59.7
Prupe.6G074400 Prunus persica HOM05D005444 ORTHO05D006773 6.2e-72 275.0 216 69.9
MELO3C020623.2 Cucumis melo HOM05D005444 ORTHO05D006773 1.1e-71 274.2 257 58.4
Oeu002422.1 Olea europaea HOM05D005444 ORTHO05D006773 1.4e-71 273.9 440 42.5
Duzib168G1171 Durio zibethinus HOM05D005444 ORTHO05D006773 7.6e-70 268.1 280 53.9
Psat5g286680 Pisum sativum HOM05D005444 ORTHO05D006773 8.4e-69 264.6 278 56.1
Hund18899 Selenicereus undatus HOM05D005444 ORTHO05D006773 2.7e-67 259.6 254 58.3
Ca_19148_v3 Cicer arietinum L. HOM05D005444 ORTHO05D006773 3.3e-65 252.7 225 61.8
Mapoly0050s0097 Marchantia polymorpha HOM05D005444 ORTHO05D006773 4.0e-63 245.7 229 53.7
Thhalv10014435m.g Eutrema salsugineum HOM05D005444 ORTHO05D006773 2.2e-61 240.0 245 56.3
SGA_v2.0_scaffold203G41537 Striga asiatica HOM05D005444 ORTHO05D006773 6.4e-61 238.4 174 71.8
AagrBONN_evm.TU.Sc2ySwM_368.577 Anthoceros agrestis HOM05D005444 ORTHO05D006773 2.7e-59 233.0 229 52.0
HPP92_009462 Vanilla planifolia HOM05D005444 ORTHO05D006773 4.6e-59 232.3 211 56.4
Pp3c1_24530 Physcomitrium patens HOM05D005444 ORTHO05D006773 6.0e-59 231.9 222 53.2
Pp3c14_5400 Physcomitrium patens HOM05D005444 ORTHO05D006773 2.8e-56 223.0 242 50.8
PGSC0003DMG402030323 Solanum tuberosum HOM05D005444 ORTHO05D006773 3.1e-55 219.5 163 66.3
TPR.G1035 Trifolium pratense HOM05D005444 ORTHO05D006773 6.5e-53 211.8 197 59.9
SGA_v2.0_scaffold203G41535 Striga asiatica HOM05D005444 ORTHO05D006773 9.4e-44 181.4 127 78.7
CARHR285770 Cardamine hirsuta HOM05D005444 ORTHO05D006773 1.0e-42 177.9 165 54.5
Aqoxy1G00926 Aquilegia oxysepala HOM05D005444 ORTHO05D006773 1.5e-41 174.1 154 60.4
DCAR_005353 Daucus carota HOM05D005444 ORTHO05D006773 4.8e-40 169.1 112 70.5
Duzib170G0057 Durio zibethinus HOM05D005444 ORTHO05D006773 2.6e-38 163.3 199 49.7
Zm00001eb355820 Zea mays HOM05D005444 ORTHO05D006773 5.0e-37 159.1 148 51.4
MCO07G449 Micromonas commoda HOM05D005444 ORTHO05D006773 2.0e-33 147.1 222 39.2
Aqoxy1G00927 Aquilegia oxysepala HOM05D005444 ORTHO05D006773 6.3e-32 142.1 116 65.5
TPR.G3768 Trifolium pratense HOM05D005444 ORTHO05D006773 1.1e-31 141.4 119 63.0
unitig_747.g22036 Utricularia gibba HOM05D005444 ORTHO05D006773 1.4e-31 141.0 102 70.6
Nn2g13370 Nelumbo nucifera HOM05D005444 ORTHO05D006773 2.4e-31 140.2 89 71.9
Ah.15g097630 Amaranthus hybridus HOM05D005444 ORTHO05D006773 2.6e-30 136.7 76 82.9
unitig_747.g22037 Utricularia gibba HOM05D005444 ORTHO05D006773 2.5e-28 130.2 111 61.3
HanXRQChr06g0167871 Helianthus annuus HOM05D000219 ORTHO05D006773 1.3e-24 117.9 77 74.0
HanXRQChr10g0291051 Helianthus annuus HOM05D005444 ORTHO05D006773 1.3e-24 117.9 88 67.0
HanXRQChr10g0291061 Helianthus annuus HOM05D005444 ORTHO05D006773 1.3e-24 117.9 88 67.0
Os05g0110800 Oryza sativa ssp. japonica HOM05D005444 ORTHO05D006773 2.2e-24 117.1 67 82.1
Medtr4g064030 Medicago truncatula HOM05D005444 ORTHO05D006773 2.9e-21 106.7 131 47.3
TAR636G2897 Trochodendron aralioides HOM05D005444 ORTHO05D006773 4.8e-16 89.4 80 63.8
TPR.G27554 Trifolium pratense HOM05D005444 ORTHO05D006773 5.3e-15 85.9 56 69.6
TPR.G27777 Trifolium pratense HOM05D005444 ORTHO05D006773 7.0e-15 85.5 65 66.2
Ah.15g097620 Amaranthus hybridus HOM05D005444 ORTHO05D006773 7.7e-14 82.0 44 81.8
AUR62031662 Chenopodium quinoa HOM05D001050 ORTHO05D001270 8.5e-13 78.6 90 50.0
Psat5g007960 Pisum sativum HOM05D005444 ORTHO05D006773 1.5e-12 77.8 72 58.3
TPR.G376 Trifolium pratense HOM05D025391 ORTHO05D030167 1.5e-12 77.8 42 83.3
Nitab4.5_0003274g0090 Nicotiana tabacum HOM05D003763 ORTHO05D004315 2.1e-11 73.9 183 29.5
COL.COLO4_35627 Corchorus olitorius HOM05D005444 ORTHO05D001950 4.7e-11 72.8 93 50.5
Psat4g229040 Pisum sativum HOM05D005444 ORTHO05D006773 1.0e-10 71.6 46 73.9
CBR_g23735 Chara braunii HOM05D003763 ORTHO05D004315 4.4e-09 66.2 203 26.1
Glyma.11G138967 Glycine max HOM05D005444 ORTHO05D006773 1.8e-07 60.8 73 46.6
SMO356G0021 Selaginella moellendorffii HOM05D003763 ORTHO05D004315 1.8e-07 60.8 188 27.7
BcaB01g04587 Brassica carinata HOM05D000021 ORTHO05D000010 2.4e-07 60.5 39 76.9
Zm00001eb065010 Zea mays HOM05D003763 ORTHO05D004315 4.1e-07 59.7 174 29.3
SEGI_18243 Sequoiadendron giganteum HOM05D003763 ORTHO05D004315 7.7e-06 55.5 198 24.7


User provided reference genes

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