Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Migut.D01994 Erythranthe guttata HOM05D008378 ORTHO05D010346 7.3e-66 253.8 136 100.0
SalBow6G1615 Salvia bowleyana HOM05D008378 ORTHO05D010346 6.5e-22 107.8 94 66.0
MSTRG.23165 Avicennia marina HOM05D008378 ORTHO05D010346 1.1e-21 107.1 131 51.1
SalBow5G0298 Salvia bowleyana HOM05D008378 ORTHO05D010346 1.8e-19 99.8 98 56.1
SalBow5G3471 Salvia bowleyana HOM05D008378 ORTHO05D010346 2.3e-19 99.4 98 55.1
Migut.O00155 Erythranthe guttata HOM05D008378 ORTHO05D010346 3.9e-19 98.6 122 52.5
ECA247G3718 Erigeron canadensis HOM05D000048 ORTHO05D000207 6.3e-17 91.3 76 68.4
Lj5A129G68 Lonicera japonica HOM05D003772 ORTHO05D010346 8.2e-17 90.9 79 69.6
Rhsim08G0177400 Rhododendron simsii HOM05D008378 ORTHO05D010346 1.4e-16 90.1 85 64.7
QL10p006910 Quercus lobata HOM05D008378 ORTHO05D010346 9.1e-16 87.4 128 49.2
Cfa019213 Carpinus fangiana HOM05D008378 ORTHO05D010346 1.5e-15 86.7 79 64.6
Haze_07583 Corylus avellana HOM05D008378 ORTHO05D010346 1.5e-15 86.7 73 68.5
CiPaw.11G020600 Carya illinoinensis HOM05D008378 ORTHO05D010346 2.6e-15 85.9 94 58.5
Dinv38528 Davidia involucrata HOM05D008378 ORTHO05D010346 2.6e-15 85.9 70 72.9
TWI14G0631 Tripterygium wilfordii HOM05D008378 ORTHO05D010346 3.4e-15 85.5 79 67.1
HanXRQChr02g0035801 Helianthus annuus HOM05D008378 ORTHO05D010346 7.7e-15 84.3 82 61.0
Hma1.2p1_0046F.1_g027100 Hydrangea macrophylla HOM05D003772 ORTHO05D010346 7.7e-15 84.3 77 63.6
Prupe.8G004000 Prunus persica HOM05D008378 ORTHO05D010346 1.3e-14 83.6 110 47.3
vmacro19302 Vaccinium macrocarpon HOM05D008378 ORTHO05D010346 3.8e-14 82.0 113 50.4
DCAR_021586 Daucus carota HOM05D003772 ORTHO05D004509 1.1e-13 80.5 107 51.4
EL10Ac5g10649 Beta vulgaris HOM05D008378 ORTHO05D010346 4.2e-13 78.6 74 55.4
AUR62028720 Chenopodium quinoa HOM05D008378 ORTHO05D010346 5.5e-13 78.2 74 56.8
Lsat_1_v5_gn_1_27801 Lactuca sativa HOM05D000048 ORTHO05D000207 5.5e-13 78.2 76 57.9
AUR62008138 Chenopodium quinoa HOM05D008378 ORTHO05D010346 1.6e-12 76.6 74 55.4
Cc04_g11560 Coffea canephora HOM05D008378 ORTHO05D010346 2.1e-12 76.3 62 64.5
Peaxi162Scf00089g01344 Petunia axillaris HOM05D000048 ORTHO05D000207 4.7e-12 75.1 78 55.1
Peaxi162Scf00057g00012 Petunia axillaris HOM05D008378 ORTHO05D010346 6.1e-12 74.7 78 56.4
THA.LOC104809774 Tarenaya hassleriana HOM05D008378 ORTHO05D010346 6.1e-12 74.7 74 56.8
RcHm_v2.0_Chr6g0249651 Rosa chinensis HOM05D008378 ORTHO05D010346 7.9e-12 74.3 111 44.1
CsaV3_1G001040 Cucumis sativus L. HOM05D000048 ORTHO05D010346 1.0e-11 73.9 72 58.3
Dinv16953 Davidia involucrata HOM05D008378 ORTHO05D010346 2.3e-11 72.8 85 54.1
Nitab4.5_0000003g0800 Nicotiana tabacum HOM05D008378 ORTHO05D010346 3.9e-11 72.0 65 56.9
HanXRQChr05g0154181 Helianthus annuus HOM05D008378 ORTHO05D010346 1.5e-10 70.1 76 52.6
Peaxi162Scf00089g01325 Petunia axillaris HOM05D008378 ORTHO05D010346 1.5e-10 70.1 72 56.9
MELO3C029768.2 Cucumis melo HOM05D008378 ORTHO05D010346 2.6e-10 69.3 76 57.9
Sed0014985 Sechium edule HOM05D008378 ORTHO05D010346 2.6e-10 69.3 76 55.3
ClCG06G017410 Citrullus lanatus HOM05D008378 ORTHO05D010346 4.4e-10 68.6 75 57.3
Sc10g0010230 Simmondsia chinensis HOM05D008378 ORTHO05D010346 5.7e-10 68.2 76 57.9
PGSC0003DMG400027074 Solanum tuberosum HOM05D008378 ORTHO05D010346 7.4e-10 67.8 65 55.4
Nitab4.5_0001683g0020 Nicotiana tabacum HOM05D008378 ORTHO05D010346 1.3e-09 67.0 78 47.4
Nitab4.5_0013669g0010 Nicotiana tabacum HOM05D008378 ORTHO05D010346 1.3e-09 67.0 78 53.8
PGSC0003DMG400018121 Solanum tuberosum HOM05D008378 ORTHO05D010346 1.3e-09 67.0 87 51.7
PGR083G1326 Punica granatum HOM05D008378 ORTHO05D010346 2.2e-09 66.2 76 55.3
Sopen06g028050 Solanum pennellii HOM05D008378 ORTHO05D010346 2.2e-09 66.2 65 56.9
Aqoxy5G03757 Aquilegia oxysepala HOM05D008378 ORTHO05D010346 2.8e-09 65.9 74 52.7
TAR624G0900 Trochodendron aralioides HOM05D003772 ORTHO05D004509 8.2e-09 64.3 64 59.4
Aqoxy1G02411 Aquilegia oxysepala HOM05D003772 ORTHO05D004509 1.1e-08 63.9 72 50.0
Lj4g0016291 Lotus japonicus HOM05D020160 ORTHO05D010346 1.1e-08 63.9 77 53.2
Potri.015G083900 Populus trichocarpa HOM05D008378 ORTHO05D010346 1.8e-08 63.2 50 66.0
Solyc06g071760.1 Solanum lycopersicum HOM05D008378 ORTHO05D010346 1.8e-08 63.2 65 55.4
CARHR258450 Cardamine hirsuta HOM05D008378 ORTHO05D010346 2.4e-08 62.8 108 41.7
HPP92_021377 Vanilla planifolia HOM05D003772 ORTHO05D004509 2.4e-08 62.8 72 54.2
TAR629G1107 Trochodendron aralioides HOM05D003772 ORTHO05D004509 3.1e-08 62.4 61 62.3
Cc05_g07210 Coffea canephora HOM05D003772 ORTHO05D004509 5.3e-08 61.6 82 46.3
COL.COLO4_30203 Corchorus olitorius HOM05D003772 ORTHO05D004509 7.0e-08 61.2 88 47.7
Migut.F01269 Erythranthe guttata HOM05D003772 ORTHO05D004509 9.1e-08 60.8 88 44.3
CAN.G248.1 Capsicum annuum HOM05D003772 ORTHO05D004509 1.2e-07 60.5 82 46.3
Duzib132G0444 Durio zibethinus HOM05D003772 ORTHO05D004509 1.2e-07 60.5 88 47.7
Glyma.17G084800 Glycine max HOM05D020160 ORTHO05D010346 1.2e-07 60.5 76 52.6
HPP92_020246 Vanilla planifolia HOM05D003772 ORTHO05D004509 1.2e-07 60.5 72 54.2
Peaxi162Scf00059g00193 Petunia axillaris HOM05D003772 ORTHO05D004509 2.0e-07 59.7 88 44.3
Peaxi162Scf00132g00006 Petunia axillaris HOM05D003772 ORTHO05D004509 2.0e-07 59.7 88 43.2
Nitab4.5_0014741g0030 Nicotiana tabacum HOM05D003772 ORTHO05D004509 2.6e-07 59.3 88 44.3
Oeu036503.1 Olea europaea HOM05D008378 ORTHO05D010346 2.6e-07 59.3 59 54.2
TAR626G1598 Trochodendron aralioides HOM05D003772 ORTHO05D004509 2.6e-07 59.3 72 51.4
BcaC01g04828 Brassica carinata HOM05D008378 ORTHO05D010346 3.4e-07 58.9 108 42.6
Duzib248G0440 Durio zibethinus HOM05D003772 ORTHO05D004509 3.4e-07 58.9 88 46.6
Gohir.A03G156100 Gossypium hirsutum HOM05D003772 ORTHO05D004509 3.4e-07 58.9 97 44.3
Manes.06G110000 Manihot esculenta HOM05D008378 ORTHO05D010346 3.4e-07 58.9 85 43.5
Atru.chr9.2574 Acer truncatum HOM05D003157 ORTHO05D004447 4.5e-07 58.5 99 43.4
Gorai.005G201000 Gossypium raimondii HOM05D003772 ORTHO05D004509 4.5e-07 58.5 88 46.6
PSO675G9105 Papaver somniferum HOM05D003772 ORTHO05D004509 4.5e-07 58.5 82 43.9
Sabra15G0107100 Salix brachista HOM05D002488 ORTHO05D002613 4.5e-07 58.5 50 64.0
PGSC0003DMG400013145 Solanum tuberosum HOM05D003772 ORTHO05D004509 4.5e-07 58.5 88 43.2
Thecc.02G180700 Theobroma cacao HOM05D003772 ORTHO05D004509 4.5e-07 58.5 88 47.7
AT5G50175 Arabidopsis thaliana HOM05D008378 ORTHO05D010346 5.9e-07 58.2 58 58.6
A03p27680 Brassica napus HOM05D008378 ORTHO05D010346 5.9e-07 58.2 61 57.4
BraA03t11981Z Brassica rapa HOM05D008378 ORTHO05D010346 5.9e-07 58.2 61 57.4
Nn1g04097 Nelumbo nucifera HOM05D003772 ORTHO05D004509 5.9e-07 58.2 82 45.1
Nitab4.5_0000638g0260 Nicotiana tabacum HOM05D003772 ORTHO05D004509 5.9e-07 58.2 88 44.3
Solyc10g008310.1 Solanum lycopersicum HOM05D003772 ORTHO05D004509 5.9e-07 58.2 88 43.2
C03p33390 Brassica napus HOM05D008378 ORTHO05D010346 7.7e-07 57.8 108 41.7
BolC3t15661H Brassica oleracea HOM05D008378 ORTHO05D010346 7.7e-07 57.8 108 41.7
Cfa014621 Carpinus fangiana HOM05D003772 ORTHO05D004509 7.7e-07 57.8 88 45.5
Lsat_1_v5_gn_5_14380 Lactuca sativa HOM05D003772 ORTHO05D004509 7.7e-07 57.8 68 51.5
Solyc07g053930.1 Solanum lycopersicum HOM05D003772 ORTHO05D004509 7.7e-07 57.8 86 39.5
Sopen07g027910 Solanum pennellii HOM05D003772 ORTHO05D004509 7.7e-07 57.8 86 39.5
TWI59G0493 Tripterygium wilfordii HOM05D003772 ORTHO05D004509 7.7e-07 57.8 88 47.7
Actinidia11078 Actinidia chinensis HOM05D003772 ORTHO05D004509 1.0e-06 57.4 88 44.3
Carub.0008s1019 Capsella rubella HOM05D008378 ORTHO05D010346 1.0e-06 57.4 60 56.7
Gohir.D02G179200 Gossypium hirsutum HOM05D003772 ORTHO05D004509 1.0e-06 57.4 88 45.5
Lalb_Chr03g0029491 Lupinus albus HOM05D003772 ORTHO05D004509 1.0e-06 57.4 88 43.2
Phvul.003G204900 Phaseolus vulgaris HOM05D020160 ORTHO05D010346 1.0e-06 57.4 77 48.1
BcaB01g02914 Brassica carinata HOM05D008378 ORTHO05D010346 1.3e-06 57.0 61 57.4
Thhalv10015058m.g Eutrema salsugineum HOM05D008378 ORTHO05D010346 1.3e-06 57.0 109 39.4
Lj3g0023444 Lotus japonicus HOM05D003772 ORTHO05D004509 1.3e-06 57.0 82 45.1
PGR042G2646 Punica granatum HOM05D003772 ORTHO05D004509 1.3e-06 57.0 88 46.6
SGA_v2.0_scaffold109G31121 Striga asiatica HOM05D003772 ORTHO05D004509 1.3e-06 57.0 82 42.7
Haze_13171 Corylus avellana HOM05D003772 ORTHO05D004509 2.2e-06 56.2 88 44.3
Psat0s2365g0040 Pisum sativum HOM05D003772 ORTHO05D004509 2.2e-06 56.2 88 45.5
PGSC0003DMG400018339 Solanum tuberosum HOM05D003772 ORTHO05D004509 2.2e-06 56.2 82 41.5
VMungo1127G0003 Vigna mungo HOM05D003772 ORTHO05D004509 2.2e-06 56.2 106 43.4
VMungo1215G1140 Vigna mungo HOM05D020160 ORTHO05D010346 2.2e-06 56.2 76 50.0
CSS0020254 Camellia sinensis var. sinensis HOM05D003772 ORTHO05D004509 2.9e-06 55.8 88 40.9
CSS0031333 Camellia sinensis var. sinensis HOM05D003772 ORTHO05D004509 2.9e-06 55.8 88 39.8
Gorai.002G018300 Gossypium raimondii HOM05D003772 ORTHO05D004509 2.9e-06 55.8 66 51.5
Medtr4g078240 Medicago truncatula HOM05D003772 ORTHO05D004509 2.9e-06 55.8 82 42.7
FAN02G3561 Fragaria x ananassa HOM05D003772 ORTHO05D004509 3.8e-06 55.5 82 45.1
Gohir.D01G016600 Gossypium hirsutum HOM05D003772 ORTHO05D004509 3.8e-06 55.5 66 51.5
MBI06_g33538_MAGBIO Magnolia biondii HOM05D003772 ORTHO05D004509 3.8e-06 55.5 75 49.3
Manes.12G089142 Manihot esculenta HOM05D003772 ORTHO05D004509 3.8e-06 55.5 88 45.5
Phvul.011G119000 Phaseolus vulgaris HOM05D003772 ORTHO05D004509 3.8e-06 55.5 106 42.5
Sed0018072 Sechium edule HOM05D003772 ORTHO05D004509 3.8e-06 55.5 88 46.6
Eucgr.A01826 Eucalyptus grandis HOM05D003772 ORTHO05D004509 5.0e-06 55.1 88 45.5
FvH4_6g26280 Fragaria vesca HOM05D003772 ORTHO05D004509 5.0e-06 55.1 88 44.3
FAN05G4300 Fragaria x ananassa HOM05D003772 ORTHO05D004509 5.0e-06 55.1 88 44.3
FAN09G0390 Fragaria x ananassa HOM05D003772 ORTHO05D004509 5.0e-06 55.1 88 44.3
Lj8P111T15 Lonicera japonica HOM05D003772 ORTHO05D004509 5.0e-06 55.1 82 43.9
PSO754G0065 Papaver somniferum HOM05D008378 ORTHO05D010346 5.0e-06 55.1 86 44.2
QL08p038995 Quercus lobata HOM05D003772 ORTHO05D004509 5.0e-06 55.1 88 42.0
Atru.chr6.2987 Acer truncatum HOM05D003772 ORTHO05D004509 6.5e-06 54.7 88 45.5
MSTRG.14329 Avicennia marina HOM05D003772 ORTHO05D004509 6.5e-06 54.7 88 42.0
MSTRG.14330 Avicennia marina HOM05D003772 ORTHO05D004509 6.5e-06 54.7 88 42.0
ClCG00G003560 Citrullus lanatus HOM05D003772 ORTHO05D004509 6.5e-06 54.7 119 38.7
ClCG07G002860 Citrullus lanatus HOM05D003772 ORTHO05D004509 6.5e-06 54.7 119 38.7
Duzib052G1162 Durio zibethinus HOM05D003772 ORTHO05D004509 6.5e-06 54.7 88 45.5
Glyma.13G296500 Glycine max HOM05D003772 ORTHO05D004509 6.5e-06 54.7 82 45.1
Gohir.A01G016500 Gossypium hirsutum HOM05D003772 ORTHO05D004509 6.5e-06 54.7 66 51.5
Oeu017493.1 Olea europaea HOM05D003772 ORTHO05D004509 6.5e-06 54.7 69 49.3
A08p20120 Brassica napus HOM05D003772 ORTHO05D004509 8.5e-06 54.3 82 41.5
BraA08t33971Z Brassica rapa HOM05D003772 ORTHO05D004509 8.5e-06 54.3 82 41.5
CSS0009217 Camellia sinensis var. sinensis HOM05D003772 ORTHO05D004509 8.5e-06 54.3 83 39.8
CSS0025212 Camellia sinensis var. sinensis HOM05D003772 ORTHO05D004509 8.5e-06 54.3 83 39.8
CiPaw.03G178000 Carya illinoinensis HOM05D003772 ORTHO05D004509 8.5e-06 54.3 88 43.2


User provided reference genes

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