Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Migut.D01962 Erythranthe guttata HOM05D005107 ORTHO05D006200 2.1e-178 629.0 338 100.0
Migut.O00123 Erythranthe guttata HOM05D005107 ORTHO05D006200 9.5e-107 391.0 341 61.6
SalBow6G4644 Salvia bowleyana HOM05D005107 ORTHO05D006200 2.8e-106 389.4 343 61.2
MSTRG.23144 Avicennia marina HOM05D005107 ORTHO05D006200 3.1e-105 386.0 343 60.9
SalBow5G2679 Salvia bowleyana HOM05D005107 ORTHO05D006200 2.1e-101 373.2 345 59.4
Dinv20630 Davidia involucrata HOM05D005107 ORTHO05D006200 1.0e-92 344.4 343 55.1
CSS0000196 Camellia sinensis var. sinensis HOM05D005107 ORTHO05D006200 5.2e-89 332.0 343 51.9
PGSC0003DMG401018164 Solanum tuberosum HOM05D005107 ORTHO05D006200 3.8e-87 325.9 341 52.8
Oeu016417.1 Olea europaea HOM05D005107 ORTHO05D006200 1.1e-86 324.3 328 53.4
Sopen03g031750 Solanum pennellii HOM05D005107 ORTHO05D006200 3.2e-86 322.8 341 52.5
Nitab4.5_0001207g0070 Nicotiana tabacum HOM05D005107 ORTHO05D006200 1.7e-84 317.0 333 52.9
Hma1.2p1_0592F.1_g185565 Hydrangea macrophylla HOM05D005107 ORTHO05D006200 3.9e-84 315.8 343 52.5
CAN.G1166.21 Capsicum annuum HOM05D005107 ORTHO05D006200 1.1e-83 314.3 343 52.2
Solyc03g112670.3 Solanum lycopersicum HOM05D005107 ORTHO05D006200 1.5e-83 313.9 341 51.9
CSS0014290 Camellia sinensis var. sinensis HOM05D005107 ORTHO05D006200 2.1e-82 310.1 343 51.0
Cpa.g.sc153.5 Carica papaya HOM05D005107 ORTHO05D006200 2.8e-82 309.7 344 50.6
Peaxi162Scf00089g01740 Petunia axillaris HOM05D005107 ORTHO05D006200 1.4e-81 307.4 327 52.9
GSVIVG01007704001 Vitis vinifera HOM05D005107 ORTHO05D006200 6.9e-81 305.1 344 51.2
Hma1.2p1_0046F.1_g026720 Hydrangea macrophylla HOM05D005107 ORTHO05D006200 3.4e-80 302.8 343 48.7
Nitab4.5_0003229g0090 Nicotiana tabacum HOM05D005107 ORTHO05D006200 1.7e-79 300.4 324 52.2
MD14G1176600 Malus domestica HOM05D005107 ORTHO05D006200 8.4e-79 298.1 340 48.5
CSS0028022 Camellia sinensis var. sinensis HOM05D005107 ORTHO05D006200 2.7e-77 293.1 343 49.3
Thecc.03G018700 Theobroma cacao HOM05D005107 ORTHO05D006200 2.7e-77 293.1 344 47.4
Atru.chr9.2518 Acer truncatum HOM05D005107 ORTHO05D006200 3.5e-77 292.7 345 49.3
QL10p008945 Quercus lobata HOM05D005107 ORTHO05D006200 2.3e-76 290.0 346 48.3
Prupe.5G170500 Prunus persica HOM05D005107 ORTHO05D006200 3.9e-76 289.3 342 48.2
TAR374G1030 Trochodendron aralioides HOM05D005107 ORTHO05D006200 4.3e-75 285.8 344 47.1
Gorai.008G293700 Gossypium raimondii HOM05D005107 ORTHO05D006200 5.6e-75 285.4 344 46.8
Gohir.D12G273300 Gossypium hirsutum HOM05D005107 ORTHO05D006200 7.4e-75 285.0 344 46.8
MD06G1170900 Malus domestica HOM05D005107 ORTHO05D006200 9.6e-75 284.6 342 47.4
Gohir.A12G272600 Gossypium hirsutum HOM05D005107 ORTHO05D006200 6.2e-74 282.0 344 46.5
TWI23G1004 Tripterygium wilfordii HOM05D005107 ORTHO05D006200 1.1e-73 281.2 343 46.4
Cc06_g17290 Coffea canephora HOM05D005107 ORTHO05D006200 1.8e-73 280.4 335 49.9
FvH4_5g05630 Fragaria vesca HOM05D005107 ORTHO05D006200 1.8e-73 280.4 342 47.4
Sc22g0001200 Simmondsia chinensis HOM05D005107 ORTHO05D006200 1.2e-72 277.7 341 46.0
RcHm_v2.0_Chr7g0193181 Rosa chinensis HOM05D005107 ORTHO05D006200 4.5e-72 275.8 350 46.3
Peaxi162Scf00255g00912 Petunia axillaris HOM05D005107 ORTHO05D006200 5.8e-72 275.4 344 47.1
Duzib205G0074 Durio zibethinus HOM05D005107 ORTHO05D006200 1.3e-71 274.2 336 46.1
Sabra12G0063800 Salix brachista HOM05D005107 ORTHO05D006200 2.9e-71 273.1 344 45.6
Manes.06G107100 Manihot esculenta HOM05D005107 ORTHO05D006200 3.8e-71 272.7 345 49.3
Gorai.001G071700 Gossypium raimondii HOM05D005107 ORTHO05D006200 6.4e-71 271.9 345 45.8
COL.COLO4_30099 Corchorus olitorius HOM05D005107 ORTHO05D006200 1.4e-70 270.8 344 45.3
TAR622G1391 Trochodendron aralioides HOM05D005107 ORTHO05D006200 4.2e-70 269.2 344 47.1
Potri.012G088600 Populus trichocarpa HOM05D005107 ORTHO05D006200 5.5e-70 268.9 344 46.2
Gohir.D07G068200 Gossypium hirsutum HOM05D005107 ORTHO05D006200 9.3e-70 268.1 345 45.8
Potri.015G079700 Populus trichocarpa HOM05D005107 ORTHO05D006200 4.6e-69 265.8 345 45.2
Eucgr.B00249 Eucalyptus grandis HOM05D005107 ORTHO05D006200 6.0e-69 265.4 345 46.1
Gohir.A07G063500 Gossypium hirsutum HOM05D005107 ORTHO05D006200 2.3e-68 263.5 345 44.6
TWI14G0467 Tripterygium wilfordii HOM05D005107 ORTHO05D006200 2.3e-68 263.5 343 44.9
ClCG01G013290 Citrullus lanatus HOM05D005107 ORTHO05D006200 5.1e-68 262.3 342 45.3
AL8G40070 Arabidopsis lyrata HOM05D005107 ORTHO05D006200 4.3e-67 259.2 352 42.6
Thhalv10004512m.g Eutrema salsugineum HOM05D005107 ORTHO05D006200 9.6e-67 258.1 345 43.5
Sabra15G0104000 Salix brachista HOM05D005107 ORTHO05D006200 9.6e-67 258.1 355 43.7
Sp2g26180 Schrenkiella parvula HOM05D005107 ORTHO05D006200 1.3e-66 257.7 346 42.5
AT5G63050 Arabidopsis thaliana HOM05D005107 ORTHO05D006200 3.7e-66 256.1 352 41.8
Carub.0008s2376 Capsella rubella HOM05D005107 ORTHO05D006200 8.2e-66 255.0 352 41.8
CiPaw.11G023500 Carya illinoinensis HOM05D005107 ORTHO05D006200 1.4e-65 254.2 342 46.5
FAN04G1011 Fragaria x ananassa HOM05D005107 ORTHO05D006200 1.4e-65 254.2 342 45.3
BolC9t53818H Brassica oleracea HOM05D005107 ORTHO05D006200 2.4e-65 253.4 347 42.9
CANSAT80G2623 Cannabis sativa HOM05D005107 ORTHO05D006200 3.1e-65 253.1 342 44.4
FAN18G1528 Fragaria x ananassa HOM05D005107 ORTHO05D006200 3.1e-65 253.1 342 45.0
CARHR276850 Cardamine hirsuta HOM05D005107 ORTHO05D006200 5.3e-65 252.3 352 41.2
Nn4g22685 Nelumbo nucifera HOM05D005107 ORTHO05D006200 9.0e-65 251.5 338 42.3
Nn4g22690 Nelumbo nucifera HOM05D005107 ORTHO05D006200 9.0e-65 251.5 338 42.3
unitig_26.g9615 Utricularia gibba HOM05D005107 ORTHO05D006200 2.0e-64 250.4 329 43.8
Glyma.04G185700 Glycine max HOM05D005107 ORTHO05D006200 2.6e-64 250.0 344 44.2
Nn2g12593 Nelumbo nucifera HOM05D005107 ORTHO05D006200 2.6e-64 250.0 343 42.6
A09p08000 Brassica napus HOM05D005107 ORTHO05D006200 1.3e-63 247.7 338 42.6
Sed0009116 Sechium edule HOM05D005107 ORTHO05D006200 2.2e-63 246.9 342 42.7
FAN08G1807 Fragaria x ananassa HOM05D005107 ORTHO05D006200 3.8e-63 246.1 343 44.9
C09p09050 Brassica napus HOM05D005107 ORTHO05D006200 4.9e-63 245.7 338 42.9
Lalb_Chr08g0236621 Lupinus albus HOM05D005107 ORTHO05D006200 4.9e-63 245.7 340 43.2
VMungo1309G0437 Vigna mungo HOM05D005107 ORTHO05D006200 4.9e-63 245.7 346 42.8
Ciclev10021009m.g Citrus clementina HOM05D005107 ORTHO05D006200 1.9e-62 243.8 346 44.5
Glyma.06G180400 Glycine max HOM05D005107 ORTHO05D006200 1.9e-62 243.8 346 42.2
Haze_07542 Corylus avellana HOM05D005107 ORTHO05D006200 2.5e-62 243.4 291 49.5
Ca_21938_v3 Cicer arietinum L. HOM05D005107 ORTHO05D006200 4.2e-62 242.7 340 42.6
Lj1g0017341 Lotus japonicus HOM05D005107 ORTHO05D006200 5.5e-62 242.3 338 41.1
MELO3C002281.2 Cucumis melo HOM05D005107 ORTHO05D006200 1.2e-61 241.1 341 42.5
Lj4g0022030 Lotus japonicus HOM05D005107 ORTHO05D006200 1.2e-61 241.1 338 40.8
Phvul.009G176100 Phaseolus vulgaris HOM05D005107 ORTHO05D006200 4.6e-61 239.2 346 41.0
Aa31LG11G620 Aethionema arabicum HOM05D005107 ORTHO05D006200 6.0e-61 238.8 337 40.4
Medtr4g105500 Medicago truncatula HOM05D005107 ORTHO05D006200 6.0e-61 238.8 331 43.2
Psat4g058600 Pisum sativum HOM05D005107 ORTHO05D006200 1.8e-60 237.3 338 40.8
TPR.G37531 Trifolium pratense HOM05D005107 ORTHO05D006200 1.1e-59 234.6 340 42.4
MBI10_g44387_MAGBIO Magnolia biondii HOM05D005107 ORTHO05D006200 3.3e-59 233.0 320 43.8
PGR083G1692 Punica granatum HOM05D005107 ORTHO05D006200 5.7e-59 232.3 346 40.2
AUR62018143 Chenopodium quinoa HOM05D005107 ORTHO05D006200 6.3e-58 228.8 306 44.8
VMungo1215G1987 Vigna mungo HOM05D005107 ORTHO05D006200 8.2e-58 228.4 344 41.9
Dinv38563 Davidia involucrata HOM05D003072 ORTHO05D008464 1.4e-57 227.6 259 51.7
BraA06t25929Z Brassica rapa HOM05D005107 ORTHO05D006200 2.4e-57 226.9 349 37.8
AUR62042560 Chenopodium quinoa HOM05D005107 ORTHO05D006200 3.1e-57 226.5 306 45.1
Phvul.003G202200 Phaseolus vulgaris HOM05D005107 ORTHO05D006200 5.3e-57 225.7 345 42.3
TWI39G0316 Tripterygium wilfordii HOM05D005107 ORTHO05D006200 5.3e-57 225.7 351 40.7
Aqoxy3G02846 Aquilegia oxysepala HOM05D005107 ORTHO05D006200 9.0e-57 224.9 344 41.9
arahy.Tifrunner.gnm1.ann1.5AH6W7 Arachis hypogaea HOM05D005107 ORTHO05D006200 1.5e-56 224.2 340 40.9
EL10Ac2g03054 Beta vulgaris HOM05D005107 ORTHO05D006200 1.5e-56 224.2 344 40.4
Lj9C446G12 Lonicera japonica HOM05D004430 ORTHO05D005088 2.0e-56 223.8 341 42.8
Ah.10g031930 Amaranthus hybridus HOM05D005107 ORTHO05D006200 2.6e-56 223.4 344 42.4
DCAR_016047 Daucus carota HOM05D005107 ORTHO05D006200 2.6e-56 223.4 341 39.9
BraA09t36452Z Brassica rapa HOM05D005107 ORTHO05D006200 4.5e-56 222.6 293 43.7
A06p29810 Brassica napus HOM05D005107 ORTHO05D006200 5.9e-56 222.2 350 37.4
THA.LOC104821481 Tarenaya hassleriana HOM05D005107 ORTHO05D006200 5.9e-56 222.2 344 39.2
THA.LOC104818212 Tarenaya hassleriana HOM05D005107 ORTHO05D006200 7.6e-56 221.9 344 39.5
arahy.Tifrunner.gnm1.ann1.6379ZA Arachis hypogaea HOM05D005107 ORTHO05D006200 1.0e-55 221.5 340 40.6
PSO063G3062 Papaver somniferum HOM05D005107 ORTHO05D006200 1.7e-55 220.7 348 42.5
Manes.14G063800 Manihot esculenta HOM05D005107 ORTHO05D006200 2.2e-55 220.3 307 45.9
Ca_16156_v3 Cicer arietinum L. HOM05D005107 ORTHO05D006200 5.0e-55 219.2 340 39.4
HanXRQChr08g0235041 Helianthus annuus HOM05D005107 ORTHO05D006200 5.0e-55 219.2 344 41.6
Sed0010155 Sechium edule HOM05D005107 ORTHO05D006200 6.5e-55 218.8 340 39.4
BcaB04g19949 Brassica carinata HOM05D005107 ORTHO05D006200 1.9e-54 217.2 291 44.0
HanXRQChr05g0154601 Helianthus annuus HOM05D005107 ORTHO05D006200 1.9e-54 217.2 349 42.1
BolC8t50877H Brassica oleracea HOM05D005107 ORTHO05D006200 1.2e-53 214.5 347 37.8
PSO832G2872 Papaver somniferum HOM05D005107 ORTHO05D006200 1.2e-53 214.5 348 42.2
ECA246G1934 Erigeron canadensis HOM05D005107 ORTHO05D006200 6.1e-53 212.2 337 41.8
Oeu024703.1 Olea europaea HOM05D005107 ORTHO05D006200 1.3e-52 211.1 199 55.3
BolC3t18614H Brassica oleracea HOM05D005107 ORTHO05D006200 3.0e-52 209.9 353 37.1
CsaV3_1G008660 Cucumis sativus L. HOM05D005107 ORTHO05D006200 6.7e-52 208.8 339 38.9
C08p32660 Brassica napus HOM05D005107 ORTHO05D006200 8.7e-52 208.4 340 37.6
FAN13G2858 Fragaria x ananassa HOM05D005107 ORTHO05D008464 7.4e-51 205.3 317 42.0
ClCG06G017120 Citrullus lanatus HOM05D005107 ORTHO05D006200 2.2e-50 203.8 339 39.8
FAN18G1595 Fragaria x ananassa HOM05D005107 ORTHO05D008464 4.8e-50 202.6 317 41.0
Medtr3g077490 Medicago truncatula HOM05D005107 ORTHO05D006200 1.4e-49 201.1 343 37.6
Actinidia19110 Actinidia chinensis HOM05D005107 ORTHO05D006200 2.4e-49 200.3 321 38.9
Psat5g115520 Pisum sativum HOM05D005107 ORTHO05D006200 4.5e-48 196.1 340 36.5
Lsat_1_v5_gn_5_15301 Lactuca sativa HOM05D005107 ORTHO05D006200 1.0e-47 194.9 342 38.6
Lj5A126T86 Lonicera japonica HOM05D005107 ORTHO05D006200 1.0e-47 194.9 291 43.3
CiPaw.12G028400 Carya illinoinensis HOM05D005107 ORTHO05D006200 2.2e-47 193.7 329 38.3
SGA_v2.0_scaffold90G27886 Striga asiatica HOM05D005107 ORTHO05D006200 6.5e-47 192.2 211 47.4
TPR.G14919 Trifolium pratense HOM05D005107 ORTHO05D006200 1.1e-46 191.4 338 36.4
MELO3C026284.2 Cucumis melo HOM05D005107 ORTHO05D006200 7.9e-45 185.3 322 37.3
BcaC01g02550 Brassica carinata HOM05D005107 ORTHO05D006200 2.3e-44 183.7 353 34.3
CDE05G1562 Ceratophyllum demersum HOM05D005107 ORTHO05D006200 2.8e-42 176.8 281 37.7
Eucgr.J01240 Eucalyptus grandis HOM05D005107 ORTHO05D006200 4.5e-40 169.5 137 56.9
ECA232G4933 Erigeron canadensis HOM05D005107 ORTHO05D006200 1.7e-39 167.5 332 36.1
Eucgr.C04410 Eucalyptus grandis HOM05D005107 ORTHO05D006200 6.5e-39 165.6 137 55.5
ECA232G2224 Erigeron canadensis HOM05D005107 ORTHO05D006200 1.1e-38 164.9 233 40.8
HPP92_001300 Vanilla planifolia HOM05D005107 ORTHO05D006200 9.4e-38 161.8 287 33.8
Eucgr.C03135 Eucalyptus grandis HOM05D005107 ORTHO05D006200 2.6e-35 153.7 129 54.3
C03p63570 Brassica napus HOM05D005107 ORTHO05D006200 1.8e-33 147.5 314 32.2
Hund13172 Selenicereus undatus HOM05D005107 ORTHO05D006200 3.5e-32 143.3 287 33.1
BcaC04g23368 Brassica carinata HOM05D005107 ORTHO05D006200 6.5e-31 139.0 103 59.2
BcaB02g09719 Brassica carinata HOM05D005107 ORTHO05D006200 2.5e-30 137.1 341 32.3
Lsat_1_v5_gn_1_28200 Lactuca sativa HOM05D005107 ORTHO05D006200 7.7e-24 115.5 334 31.4
HanXRQChr02g0035961 Helianthus annuus HOM05D005107 ORTHO05D006200 1.7e-18 97.8 293 30.0
Duzib068G0452 Durio zibethinus HOM05D005107 ORTHO05D006200 7.8e-08 62.4 133 36.8


User provided reference genes

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