Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Migut.D01747 Erythranthe guttata HOM05D030605 ORTHO05D018532 4.0e-254 880.9 444 100.0
MSTRG.4447 Avicennia marina HOM05D001536 ORTHO05D018532 1.9e-62 244.2 650 36.6
SalBow7G0805 Salvia bowleyana HOM05D001536 ORTHO05D018532 1.3e-47 194.9 626 33.9
MSTRG.9614 Avicennia marina HOM05D001536 ORTHO05D018532 3.1e-41 173.7 546 33.3
Oeu047264.1 Olea europaea HOM05D001536 ORTHO05D001442 1.9e-30 137.9 627 29.2
SGA_v2.0_scaffold114G31920 Striga asiatica HOM05D030605 ORTHO05D018532 2.4e-25 120.9 500 29.4
unitig_744.g24323 Utricularia gibba HOM05D030605 ORTHO05D018532 2.7e-24 117.5 479 30.1
unitig_21.g20531 Utricularia gibba HOM05D030605 ORTHO05D018532 2.9e-23 114.0 513 31.4
Nitab4.5_0003021g0030 Nicotiana tabacum HOM05D001536 ORTHO05D001442 3.7e-18 97.1 499 28.1
Dinv38761 Davidia involucrata HOM05D001536 ORTHO05D001442 2.3e-15 87.8 121 47.9
Rhsim08G0149900 Rhododendron simsii HOM05D001536 ORTHO05D001442 2.3e-15 87.8 494 27.9
Nitab4.5_0006673g0020 Nicotiana tabacum HOM05D001536 ORTHO05D001442 1.1e-14 85.5 499 27.3
CSS0049375 Camellia sinensis var. sinensis HOM05D001536 ORTHO05D001442 5.2e-12 76.6 283 29.7
CSS0037922 Camellia sinensis var. sinensis HOM05D001536 ORTHO05D001442 1.2e-11 75.5 206 34.5
CSS0012767 Camellia sinensis var. sinensis HOM05D001536 ORTHO05D001442 3.4e-11 73.9 190 32.6
Dinv10677 Davidia involucrata HOM05D001536 ORTHO05D001442 3.4e-11 73.9 298 29.2
Nn4g23320 Nelumbo nucifera HOM05D001536 ORTHO05D001442 5.8e-11 73.2 214 33.6
TPR.G34059 Trifolium pratense HOM05D001536 ORTHO05D001442 4.9e-10 70.1 217 32.7
GSVIVG01012173001 Vitis vinifera HOM05D001536 ORTHO05D001442 4.9e-10 70.1 184 34.2
Phvul.009G184400 Phaseolus vulgaris HOM05D001536 ORTHO05D001442 6.4e-10 69.7 240 31.7
Ciclev10030574m.g Citrus clementina HOM05D001536 ORTHO05D001442 8.3e-10 69.3 231 30.7
Phvul.002G069600 Phaseolus vulgaris HOM05D001536 ORTHO05D001442 8.3e-10 69.3 125 40.0
Peaxi162Scf00013g00051 Petunia axillaris HOM05D001536 ORTHO05D001442 1.1e-09 68.9 585 25.3
Sc04g0002960 Simmondsia chinensis HOM05D001536 ORTHO05D001442 1.1e-09 68.9 163 35.0
MELO3C011433.2 Cucumis melo HOM05D001536 ORTHO05D001442 1.4e-09 68.6 329 28.0
Oeu021094.1 Olea europaea HOM05D001536 ORTHO05D001442 1.4e-09 68.6 111 40.5
VMungo1215G2164 Vigna mungo HOM05D001536 ORTHO05D001442 1.4e-09 68.6 117 42.7
Peaxi162Scf00274g00008 Petunia axillaris HOM05D001536 ORTHO05D001442 2.4e-09 67.8 125 40.8
CSS0003937 Camellia sinensis var. sinensis HOM05D001536 ORTHO05D001442 3.2e-09 67.4 167 34.1
Cc04_g13290 Coffea canephora HOM05D001536 ORTHO05D001442 3.2e-09 67.4 217 35.0
CSS0031318 Camellia sinensis var. sinensis HOM05D001536 ORTHO05D001442 4.1e-09 67.0 210 30.0
CSS0031748 Camellia sinensis var. sinensis HOM05D001536 ORTHO05D001442 4.1e-09 67.0 210 30.0
Dinv33801 Davidia involucrata HOM05D001536 ORTHO05D001442 4.1e-09 67.0 106 41.5
Glyma.02G113300 Glycine max HOM05D001536 ORTHO05D001442 4.1e-09 67.0 117 39.3
Ca_25949_v3 Cicer arietinum L. HOM05D001536 ORTHO05D001442 5.4e-09 66.6 234 29.1
arahy.Tifrunner.gnm1.ann1.PQMP7V Arachis hypogaea HOM05D001536 ORTHO05D001442 7.1e-09 66.2 197 33.0
Cpa.g.sc13.308 Carica papaya HOM05D001536 ORTHO05D001442 7.1e-09 66.2 120 43.3
Prupe.1G281700 Prunus persica HOM05D001536 ORTHO05D001442 7.1e-09 66.2 234 28.2
Cfa019289 Carpinus fangiana HOM05D001536 ORTHO05D001442 9.2e-09 65.9 115 38.3
Duzib068G0802 Durio zibethinus HOM05D001536 ORTHO05D001442 9.2e-09 65.9 91 46.2
MELO3C012134.2 Cucumis melo HOM05D001536 ORTHO05D001442 1.2e-08 65.5 212 32.1
arahy.Tifrunner.gnm1.ann1.B15RMV Arachis hypogaea HOM05D001536 ORTHO05D001442 1.6e-08 65.1 206 32.0
Lalb_Chr17g0340961 Lupinus albus HOM05D001536 ORTHO05D001442 1.6e-08 65.1 102 40.2
MD13G1066200 Malus domestica HOM05D001536 ORTHO05D001442 1.6e-08 65.1 284 28.5
TWI79G1594 Tripterygium wilfordii HOM05D001536 ORTHO05D001442 1.6e-08 65.1 287 26.8
Haze_11937 Corylus avellana HOM05D001536 ORTHO05D001442 2.1e-08 64.7 204 29.9
MBI19_g16681_MAGBIO Magnolia biondii HOM05D001536 ORTHO05D001442 2.7e-08 64.3 122 41.0
Haze_07670 Corylus avellana HOM05D001536 ORTHO05D001442 3.5e-08 63.9 117 38.5
PSO017G3159 Papaver somniferum HOM05D001536 ORTHO05D001442 3.5e-08 63.9 217 30.9
Psat4g048920 Pisum sativum HOM05D001536 ORTHO05D001442 3.5e-08 63.9 235 29.8
VMungo1309G1429 Vigna mungo HOM05D001536 ORTHO05D001442 3.5e-08 63.9 205 31.7
Actinidia19923 Actinidia chinensis HOM05D001536 ORTHO05D001442 4.6e-08 63.5 209 30.1
Glyma.06G198000 Glycine max HOM05D001536 ORTHO05D001442 4.6e-08 63.5 206 31.6
Lalb_Chr05g0220121 Lupinus albus HOM05D001536 ORTHO05D001442 4.6e-08 63.5 202 31.2
Manes.05G107500 Manihot esculenta HOM05D001536 ORTHO05D001442 4.6e-08 63.5 199 31.7
PGR102G1162 Punica granatum HOM05D001536 ORTHO05D001442 4.6e-08 63.5 272 25.4
Sabra08G0069600 Salix brachista HOM05D001536 ORTHO05D001442 6.0e-08 63.2 215 29.8
CAN.G587.18 Capsicum annuum HOM05D001536 ORTHO05D001442 7.8e-08 62.8 99 42.4
Glyma.07G227100 Glycine max HOM05D001536 ORTHO05D001442 7.8e-08 62.8 123 37.4
Medtr4g082510 Medicago truncatula HOM05D001536 ORTHO05D001442 7.8e-08 62.8 217 30.4
SGA_v2.0_scaffold36G14432 Striga asiatica HOM05D001536 ORTHO05D001442 7.8e-08 62.8 236 28.8
Cc11_g12410 Coffea canephora HOM05D001536 ORTHO05D001442 1.0e-07 62.4 120 38.3
COL.COLO4_27938 Corchorus olitorius HOM05D001536 ORTHO05D001442 1.0e-07 62.4 195 32.3
Glyma.04G165100 Glycine max HOM05D001536 ORTHO05D001442 1.0e-07 62.4 209 30.6
CsaV3_6G032450 Cucumis sativus L. HOM05D001536 ORTHO05D001442 1.3e-07 62.0 321 26.5
Potri.008G092800 Populus trichocarpa HOM05D001536 ORTHO05D001442 1.3e-07 62.0 215 29.8
TAR629G1896 Trochodendron aralioides HOM05D001536 ORTHO05D001442 1.3e-07 62.0 113 40.7
Cfa008911 Carpinus fangiana HOM05D001536 ORTHO05D001442 1.7e-07 61.6 196 31.1
Psat7g134840 Pisum sativum HOM05D001536 ORTHO05D001442 1.7e-07 61.6 209 28.2
TAR622G0794 Trochodendron aralioides HOM05D001536 ORTHO05D001442 1.7e-07 61.6 94 44.7
Lj4g0002221 Lotus japonicus HOM05D001536 ORTHO05D001442 2.3e-07 61.2 252 29.0
PSO478G3214 Papaver somniferum HOM05D001536 ORTHO05D001442 2.3e-07 61.2 223 30.0
PSO478G3501 Papaver somniferum HOM05D001536 ORTHO05D001442 2.3e-07 61.2 213 30.0
Thecc.03G095800 Theobroma cacao HOM05D001536 ORTHO05D001442 2.3e-07 61.2 88 46.6
TWI75G0091 Tripterygium wilfordii HOM05D001536 ORTHO05D001442 2.3e-07 61.2 318 26.1
MD16G1065200 Malus domestica HOM05D001536 ORTHO05D001442 3.0e-07 60.8 288 28.1
RcHm_v2.0_Chr4g0438891 Rosa chinensis HOM05D001536 ORTHO05D001442 3.0e-07 60.8 126 36.5
CANSAT50G0006 Cannabis sativa HOM05D001536 ORTHO05D001442 3.9e-07 60.5 121 38.8
DCAR_026027 Daucus carota HOM05D001536 ORTHO05D018532 3.9e-07 60.5 336 28.0
Duzib205G0516 Durio zibethinus HOM05D001536 ORTHO05D001442 3.9e-07 60.5 157 34.4
FAN07G0538 Fragaria x ananassa HOM05D001536 ORTHO05D001442 3.9e-07 60.5 126 38.1
FAN22G0581 Fragaria x ananassa HOM05D001536 ORTHO05D001442 3.9e-07 60.5 126 38.1
arahy.Tifrunner.gnm1.ann1.PU8JJL Arachis hypogaea HOM05D001536 ORTHO05D001442 5.1e-07 60.1 244 28.7
ClCG08G010250 Citrullus lanatus HOM05D001536 ORTHO05D001442 5.1e-07 60.1 219 29.7
FAN17G0931 Fragaria x ananassa HOM05D001536 ORTHO05D001442 5.1e-07 60.1 126 38.1
Gohir.A03G068500 Gossypium hirsutum HOM05D001536 ORTHO05D001442 5.1e-07 60.1 185 32.4
PGR119G0403 Punica granatum HOM05D001536 ORTHO05D001442 5.1e-07 60.1 210 31.9
arahy.Tifrunner.gnm1.ann1.I4K7T0 Arachis hypogaea HOM05D001536 ORTHO05D001442 6.6e-07 59.7 185 31.9
CsaV3_5G033140 Cucumis sativus L. HOM05D001536 ORTHO05D001442 6.6e-07 59.7 212 31.1
Gohir.D12G165600 Gossypium hirsutum HOM05D001536 ORTHO05D001442 6.6e-07 59.7 124 38.7
Gorai.008G178300 Gossypium raimondii HOM05D001536 ORTHO05D001442 6.6e-07 59.7 124 38.7
Nitab4.5_0001211g0060 Nicotiana tabacum HOM05D001536 ORTHO05D001442 6.6e-07 59.7 127 40.2
Oeu028260.1 Olea europaea HOM05D001536 ORTHO05D001442 6.6e-07 59.7 226 27.9
Phvul.002G167700 Phaseolus vulgaris HOM05D001536 ORTHO05D001442 6.6e-07 59.7 207 31.9
Aqoxy3G03549 Aquilegia oxysepala HOM05D001536 ORTHO05D001442 8.6e-07 59.3 204 30.9
CAN.G1340.15 Capsicum annuum HOM05D001536 ORTHO05D001442 8.6e-07 59.3 124 37.9
Gohir.A05G305900 Gossypium hirsutum HOM05D001536 ORTHO05D001442 8.6e-07 59.3 192 29.2
Gohir.D03G095100 Gossypium hirsutum HOM05D001536 ORTHO05D001442 8.6e-07 59.3 91 42.9
Gorai.003G099300 Gossypium raimondii HOM05D001536 ORTHO05D001442 8.6e-07 59.3 91 42.9
Sed0017185 Sechium edule HOM05D001536 ORTHO05D001442 8.6e-07 59.3 118 40.7
Thecc.02G336800 Theobroma cacao HOM05D001536 ORTHO05D001442 8.6e-07 59.3 95 42.1
vmacro01333 Vaccinium macrocarpon HOM05D001536 ORTHO05D001442 8.6e-07 59.3 227 30.4
DCAR_025403 Daucus carota HOM05D001536 ORTHO05D001442 1.1e-06 58.9 87 41.4
Nitab4.5_0002756g0060 Nicotiana tabacum HOM05D001536 ORTHO05D001442 1.1e-06 58.9 133 39.8
PSO017G1876 Papaver somniferum HOM05D001536 ORTHO05D001442 1.1e-06 58.9 272 27.9
Sopen05g007470 Solanum pennellii HOM05D001536 ORTHO05D001442 1.1e-06 58.9 209 30.1
Ca_04904_v3 Cicer arietinum L. HOM05D001536 ORTHO05D001442 1.5e-06 58.5 123 35.0
Dinv34112 Davidia involucrata HOM05D001536 ORTHO05D001442 1.5e-06 58.5 206 29.1
Sed0018687 Sechium edule HOM05D001536 ORTHO05D001442 1.5e-06 58.5 209 29.2
HPP92_017528 Vanilla planifolia HOM05D001536 ORTHO05D001442 1.5e-06 58.5 84 45.2
ClCG05G023880 Citrullus lanatus HOM05D001536 ORTHO05D001442 1.9e-06 58.2 212 31.1
Hma1.2p1_0354F.1_g133660 Hydrangea macrophylla HOM05D001536 ORTHO05D001442 1.9e-06 58.2 227 30.4
QL03p070806 Quercus lobata HOM05D001536 ORTHO05D001442 1.9e-06 58.2 214 28.0
Sabra10G0123100 Salix brachista HOM05D001536 ORTHO05D001442 1.9e-06 58.2 219 29.2
PGSC0003DMG402028385 Solanum tuberosum HOM05D001536 ORTHO05D001442 1.9e-06 58.2 108 40.7
THA.LOC104801814 Tarenaya hassleriana HOM05D001536 ORTHO05D001442 1.9e-06 58.2 91 38.5
Atru.chr9.313 Acer truncatum HOM05D001536 ORTHO05D001442 2.5e-06 57.8 103 41.7
CAN.G442.8 Capsicum annuum HOM05D001536 ORTHO05D001442 2.5e-06 57.8 227 30.4
Cpa.g.sc1.82 Carica papaya HOM05D001536 ORTHO05D001442 2.5e-06 57.8 126 34.9
Gohir.A12G162600 Gossypium hirsutum HOM05D001536 ORTHO05D001442 2.5e-06 57.8 124 37.9
Medtr5g043430 Medicago truncatula HOM05D001536 ORTHO05D001442 2.5e-06 57.8 98 39.8
VMungo0251G0497 Vigna mungo HOM05D001536 ORTHO05D001442 2.5e-06 57.8 203 29.1
Actinidia12316 Actinidia chinensis HOM05D001536 ORTHO05D001442 3.3e-06 57.4 122 36.1
Actinidia33240 Actinidia chinensis HOM05D001536 ORTHO05D001442 3.3e-06 57.4 113 38.9
Duzib147G0949 Durio zibethinus HOM05D001536 ORTHO05D001442 3.3e-06 57.4 217 30.0
Duzib251G0780 Durio zibethinus HOM05D001536 ORTHO05D001442 3.3e-06 57.4 193 29.0
Thecc.04G089400 Theobroma cacao HOM05D001536 ORTHO05D001442 3.3e-06 57.4 93 39.8
vmacro16367 Vaccinium macrocarpon HOM05D001536 ORTHO05D001442 3.3e-06 57.4 221 29.0
vmacro17582 Vaccinium macrocarpon HOM05D001536 ORTHO05D001442 3.3e-06 57.4 200 32.0
MSTRG.7767 Avicennia marina HOM05D001536 ORTHO05D001442 4.3e-06 57.0 206 28.2
FvH4_4g30520 Fragaria vesca HOM05D001536 ORTHO05D001442 4.3e-06 57.0 126 36.5
FAN12G2957 Fragaria x ananassa HOM05D001536 ORTHO05D001442 4.3e-06 57.0 126 36.5
Nitab4.5_0000334g0200 Nicotiana tabacum HOM05D001536 ORTHO05D001442 4.3e-06 57.0 124 37.1
Actinidia01970 Actinidia chinensis HOM05D001536 ORTHO05D001442 5.6e-06 56.6 108 39.8
Ah.02g126590 Amaranthus hybridus HOM05D001536 ORTHO05D001442 5.6e-06 56.6 113 37.2
Lsat_1_v5_gn_3_56361 Lactuca sativa HOM05D001536 ORTHO05D001442 5.6e-06 56.6 126 31.0
Lj2g0017216 Lotus japonicus HOM05D001536 ORTHO05D001442 5.6e-06 56.6 194 30.9
Potri.010G162000 Populus trichocarpa HOM05D001536 ORTHO05D001442 5.6e-06 56.6 203 29.1
Sopen03g034580 Solanum pennellii HOM05D001536 ORTHO05D001442 5.6e-06 56.6 303 28.4
EL10Ac5g11082 Beta vulgaris HOM05D001536 ORTHO05D001442 7.3e-06 56.2 248 29.8
Medtr4g109190 Medicago truncatula HOM05D001536 ORTHO05D001442 7.3e-06 56.2 210 28.6
Solyc05g012650.4 Solanum lycopersicum HOM05D001536 ORTHO05D001442 7.3e-06 56.2 122 36.9
PGSC0003DMG400024659 Solanum tuberosum HOM05D001536 ORTHO05D001442 7.3e-06 56.2 307 27.0
TWI31G0752 Tripterygium wilfordii HOM05D001536 ORTHO05D001442 7.3e-06 56.2 202 29.7
TAR371G0889 Trochodendron aralioides HOM05D001536 ORTHO05D001442 7.3e-06 56.2 91 42.9
TAR374G1508 Trochodendron aralioides HOM05D001536 ORTHO05D001442 7.3e-06 56.2 271 27.7
COL.COLO4_12250 Corchorus olitorius HOM05D001536 ORTHO05D001442 9.5e-06 55.8 93 39.8
Dinv16701 Davidia involucrata HOM05D001536 ORTHO05D001442 9.5e-06 55.8 87 44.8
Glyma.20G027500 Glycine max HOM05D001536 ORTHO05D001442 9.5e-06 55.8 125 37.6
Gohir.D13G079500 Gossypium hirsutum HOM05D001536 ORTHO05D001442 9.5e-06 55.8 131 32.8
Gorai.009G325900 Gossypium raimondii HOM05D001536 ORTHO05D001442 9.5e-06 55.8 194 31.4
Lalb_Chr09g0329111 Lupinus albus HOM05D001536 ORTHO05D001442 9.5e-06 55.8 199 29.6
Hund05858 Selenicereus undatus HOM05D001536 ORTHO05D001442 9.5e-06 55.8 206 28.6
PGSC0003DMG400033051 Solanum tuberosum HOM05D001536 ORTHO05D001442 9.5e-06 55.8 92 41.3
PGSC0003DMG401028385 Solanum tuberosum HOM05D001536 ORTHO05D001442 9.5e-06 55.8 329 25.2


User provided reference genes

Program Settings