Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Migut.D01657 Erythranthe guttata HOM05D004985 ORTHO05D005912 7.2e-167 590.5 296 100.0
MSTRG.9599 Avicennia marina HOM05D004985 ORTHO05D005912 1.5e-132 476.5 299 79.6
SalBow4G0956 Salvia bowleyana HOM05D004985 ORTHO05D005912 2.8e-131 472.2 299 79.6
MSTRG.15338 Avicennia marina HOM05D004985 ORTHO05D005912 1.7e-128 463.0 303 77.6
Oeu014411.1 Olea europaea HOM05D004985 ORTHO05D005912 2.8e-126 455.7 299 74.9
SGA_v2.0_scaffold42G16037 Striga asiatica HOM05D004985 ORTHO05D005912 3.6e-126 455.3 299 76.6
Oeu042721.3 Olea europaea HOM05D004985 ORTHO05D005912 4.7e-126 454.9 299 76.3
Hma1.2p1_0060F.1_g033100 Hydrangea macrophylla HOM05D004985 ORTHO05D005912 3.7e-123 445.3 294 74.8
CSS0016421 Camellia sinensis var. sinensis HOM05D004985 ORTHO05D005912 8.3e-123 444.1 299 74.9
CSS0040501 Camellia sinensis var. sinensis HOM05D004985 ORTHO05D005912 8.3e-123 444.1 299 74.9
Atru.chr9.579 Acer truncatum HOM05D004985 ORTHO05D005912 2.7e-121 439.1 299 75.6
Actinidia04825 Actinidia chinensis HOM05D004985 ORTHO05D004228 2.3e-120 436.0 301 73.1
Ciclev10021430m.g Citrus clementina HOM05D004985 ORTHO05D005912 2.5e-119 432.6 299 75.3
CAN.G394.86 Capsicum annuum HOM05D004985 ORTHO05D005912 7.3e-119 431.0 299 74.2
PGSC0003DMG400030337 Solanum tuberosum HOM05D004985 ORTHO05D005912 7.3e-119 431.0 298 73.5
vmacro17610 Vaccinium macrocarpon HOM05D004985 ORTHO05D005912 7.3e-119 431.0 300 73.0
GSVIVG01007867001 Vitis vinifera HOM05D004985 ORTHO05D005912 1.4e-117 426.8 298 72.8
Dinv22782 Davidia involucrata HOM05D004985 ORTHO05D005912 3.1e-117 425.6 287 75.3
QL10p019503 Quercus lobata HOM05D004985 ORTHO05D005912 1.2e-116 423.7 298 72.1
Cc09_g09310 Coffea canephora HOM05D004985 ORTHO05D005912 2.0e-116 422.9 299 72.2
Solyc06g076510.3 Solanum lycopersicum HOM05D004985 ORTHO05D005912 2.6e-116 422.5 285 74.7
Peaxi162Scf00481g00631 Petunia axillaris HOM05D004985 ORTHO05D005912 4.4e-116 421.8 299 72.6
Potri.012G066200 Populus trichocarpa HOM05D004985 ORTHO05D005912 5.8e-116 421.4 299 70.9
Sopen06g032910 Solanum pennellii HOM05D004985 ORTHO05D005912 9.8e-116 420.6 285 74.0
Eucgr.K02531 Eucalyptus grandis HOM05D004985 ORTHO05D005912 1.7e-115 419.9 250 83.2
Nitab4.5_0000116g0440 Nicotiana tabacum HOM05D004985 ORTHO05D005912 2.9e-115 419.1 298 72.5
Duzib205G0214 Durio zibethinus HOM05D004985 ORTHO05D005912 3.2e-114 415.6 299 70.9
PGR044G1445 Punica granatum HOM05D004985 ORTHO05D005912 3.2e-114 415.6 294 70.1
COL.COLO4_06857 Corchorus olitorius HOM05D004985 ORTHO05D005912 4.1e-114 415.2 299 69.9
Manes.14G085700 Manihot esculenta HOM05D004985 ORTHO05D005912 4.1e-114 415.2 299 70.6
Prupe.5G205100 Prunus persica HOM05D004985 ORTHO05D005912 2.7e-113 412.5 301 71.1
Thecc.03G101800 Theobroma cacao HOM05D004985 ORTHO05D005912 6.0e-113 411.4 299 70.2
Cpa.g.sc94.56 Carica papaya HOM05D004985 ORTHO05D005912 1.7e-112 409.8 289 71.3
TAR374G0278 Trochodendron aralioides HOM05D004985 ORTHO05D005912 3.0e-112 409.1 299 69.9
TWI31G1299 Tripterygium wilfordii HOM05D004985 ORTHO05D005912 3.9e-112 408.7 275 74.9
Hund02586 Selenicereus undatus HOM05D004985 ORTHO05D005912 8.6e-112 407.5 299 69.6
AUR62021560 Chenopodium quinoa HOM05D004985 ORTHO05D005912 1.5e-111 406.8 299 69.9
CiPaw.11G053300 Carya illinoinensis HOM05D004985 ORTHO05D005912 1.9e-111 406.4 299 69.2
CsaV3_1G002920 Cucumis sativus L. HOM05D004985 ORTHO05D005912 7.3e-111 404.4 299 69.2
Gorai.001G077300 Gossypium raimondii HOM05D004985 ORTHO05D005912 7.3e-111 404.4 301 70.1
ECA232G4926 Erigeron canadensis HOM05D004985 ORTHO05D005912 9.5e-111 404.1 300 69.0
Gohir.A07G068600 Gossypium hirsutum HOM05D004985 ORTHO05D005912 9.5e-111 404.1 301 69.8
CSS0005049 Camellia sinensis var. sinensis HOM05D003672 ORTHO05D005912 1.6e-110 403.3 312 67.9
Gohir.D07G073100 Gossypium hirsutum HOM05D004985 ORTHO05D005912 1.6e-110 403.3 301 69.8
AUR62008533 Chenopodium quinoa HOM05D004985 ORTHO05D005912 2.8e-110 402.5 299 69.9
Nitab4.5_0004739g0030 Nicotiana tabacum HOM05D004985 ORTHO05D005912 4.7e-110 401.7 286 72.7
Aqoxy3G03694 Aquilegia oxysepala HOM05D004985 ORTHO05D005912 8.1e-110 401.0 301 68.4
Glyma.04G162700 Glycine max HOM05D004985 ORTHO05D005912 8.1e-110 401.0 245 79.6
Sabra12G0048600 Salix brachista HOM05D004985 ORTHO05D005912 1.8e-109 399.8 323 65.3
Glyma.06G203300 Glycine max HOM05D004985 ORTHO05D005912 6.8e-109 397.9 294 68.0
PSO017G5703 Papaver somniferum HOM05D004985 ORTHO05D005912 8.9e-109 397.5 299 66.2
Lsat_1_v5_gn_2_122560 Lactuca sativa HOM05D004985 ORTHO05D005912 1.5e-108 396.7 299 68.6
HanXRQChr09g0270221 Helianthus annuus HOM05D004985 ORTHO05D005912 2.6e-108 396.0 255 76.9
Manes.06G084800 Manihot esculenta HOM05D004985 ORTHO05D005912 9.8e-108 394.0 252 77.4
Sed0020095 Sechium edule HOM05D004985 ORTHO05D005912 1.3e-107 393.7 299 67.6
ClCG06G015640 Citrullus lanatus HOM05D004985 ORTHO05D005912 1.7e-107 393.3 314 65.9
RcHm_v2.0_Chr7g0183091 Rosa chinensis HOM05D004985 ORTHO05D005912 2.2e-107 392.9 300 67.3
FAN13G1687 Fragaria x ananassa HOM05D004985 ORTHO05D005912 3.7e-107 392.1 301 67.4
Phvul.010G007300 Phaseolus vulgaris HOM05D004985 ORTHO05D005912 6.4e-107 391.3 240 78.8
Psat5g208200 Pisum sativum HOM05D004985 ORTHO05D005912 6.4e-107 391.3 240 79.6
arahy.Tifrunner.gnm1.ann1.B21894 Arachis hypogaea HOM05D004985 ORTHO05D005912 1.9e-106 389.8 301 66.4
DCAR_029981 Daucus carota HOM05D004985 ORTHO05D005912 3.2e-106 389.0 287 68.6
PSO478G5014 Papaver somniferum HOM05D004985 ORTHO05D005912 3.2e-106 389.0 301 65.1
FvH4_5g13840 Fragaria vesca HOM05D004985 ORTHO05D005912 4.1e-106 388.7 301 67.1
TWI79G1560 Tripterygium wilfordii HOM05D004985 ORTHO05D005912 4.1e-106 388.7 232 80.2
THA.LOC104812106 Tarenaya hassleriana HOM05D004985 ORTHO05D005912 5.4e-106 388.3 255 75.7
arahy.Tifrunner.gnm1.ann1.XT1KNI Arachis hypogaea HOM05D004985 ORTHO05D005912 9.2e-106 387.5 301 65.8
MBI19_g00634_MAGBIO Magnolia biondii HOM05D004985 ORTHO05D005912 9.2e-106 387.5 272 72.1
Rhsim08G0146000 Rhododendron simsii HOM05D004985 ORTHO05D005912 9.2e-106 387.5 370 58.1
MD14G1211600 Malus domestica HOM05D004985 ORTHO05D005912 1.2e-105 387.1 250 78.0
Ca_14341_v3 Cicer arietinum L. HOM05D004985 ORTHO05D005912 1.6e-105 386.7 239 78.2
MD06G1202500 Malus domestica HOM05D004985 ORTHO05D005912 3.5e-105 385.6 250 78.4
TPR.G12221 Trifolium pratense HOM05D004985 ORTHO05D005912 3.5e-105 385.6 232 80.2
MELO3C017224.2 Cucumis melo HOM05D004985 ORTHO05D005912 4.6e-105 385.2 334 62.6
Lj1g0020192 Lotus japonicus HOM05D004985 ORTHO05D005912 6.0e-105 384.8 296 66.9
VMungo0331G0044 Vigna mungo HOM05D004985 ORTHO05D005912 3.0e-104 382.5 240 77.5
Medtr3g025840 Medicago truncatula HOM05D004985 ORTHO05D005912 3.9e-104 382.1 239 76.6
Thhalv10008334m.g Eutrema salsugineum HOM05D004985 ORTHO05D005912 1.1e-103 380.6 255 74.1
AL1G31080 Arabidopsis lyrata HOM05D004985 ORTHO05D005912 5.6e-103 378.3 255 72.9
CANSAT35G1156 Cannabis sativa HOM05D004985 ORTHO05D005912 7.3e-103 377.9 250 76.8
TPR.G28540 Trifolium pratense HOM05D004985 ORTHO05D005912 1.6e-102 376.7 232 78.4
AT1G18640 Arabidopsis thaliana HOM05D004985 ORTHO05D005912 2.8e-102 375.9 255 72.5
unitig_60.g25411 Utricularia gibba HOM05D004985 ORTHO05D005912 3.6e-102 375.6 283 68.2
Sed0001113 Sechium edule HOM05D004985 ORTHO05D005912 4.7e-102 375.2 296 66.9
CARHR019270 Cardamine hirsuta HOM05D004985 ORTHO05D005912 1.4e-101 373.6 255 72.5
Sp1g16610 Schrenkiella parvula HOM05D004985 ORTHO05D005912 1.8e-101 373.2 255 72.2
A06p14760 Brassica napus HOM05D004985 ORTHO05D005912 4.0e-101 372.1 255 71.4
Lalb_Chr12g0197201 Lupinus albus HOM05D004985 ORTHO05D005912 6.8e-101 371.3 240 76.7
BcaC05g25759 Brassica carinata HOM05D004985 ORTHO05D005912 8.9e-101 370.9 255 71.0
C05p16910 Brassica napus HOM05D004985 ORTHO05D005912 8.9e-101 370.9 255 71.0
BolC5t30393H Brassica oleracea HOM05D004985 ORTHO05D005912 8.9e-101 370.9 255 71.0
BraA06t24599Z Brassica rapa HOM05D004985 ORTHO05D005912 8.9e-101 370.9 255 71.0
Haze_18480 Corylus avellana HOM05D004985 ORTHO05D005912 8.9e-101 370.9 278 68.3
BcaB07g31884 Brassica carinata HOM05D004985 ORTHO05D005912 1.2e-100 370.5 255 71.0
Carub.0001s1827 Capsella rubella HOM05D004985 ORTHO05D005912 2.0e-100 369.8 255 71.8
Carub.0007s3048 Capsella rubella HOM05D004985 ORTHO05D005912 2.9e-99 365.9 250 71.6
Aa31LG7G3400 Aethionema arabicum HOM05D004985 ORTHO05D005912 1.9e-98 363.2 290 65.9
FAN08G1159 Fragaria x ananassa HOM05D004985 ORTHO05D005912 7.1e-98 361.3 301 64.8
Lj1g0027941 Lotus japonicus HOM05D004985 ORTHO05D005912 2.1e-97 359.8 294 64.3
A08p30280 Brassica napus HOM05D004985 ORTHO05D005912 3.5e-97 359.0 252 69.0
EL10Ac8g18666 Beta vulgaris HOM05D004985 ORTHO05D005912 6.0e-97 358.2 221 78.7
FAN18G1860 Fragaria x ananassa HOM05D004985 ORTHO05D005912 1.3e-96 357.1 301 62.8
AUR62008530 Chenopodium quinoa HOM05D004985 ORTHO05D005912 1.7e-96 356.7 299 64.2
BraA08t34961Z Brassica rapa HOM05D004985 ORTHO05D005912 2.3e-96 356.3 250 69.2
Nn4g23424 Nelumbo nucifera HOM05D004985 ORTHO05D005912 6.2e-94 348.2 288 64.9
ATR0681G325 Amborella trichopoda HOM05D004985 ORTHO05D005912 2.4e-93 346.3 224 76.3
Os11g0629500 Oryza sativa ssp. japonica HOM05D004985 ORTHO05D005912 2.4e-93 346.3 228 74.6
Os12g0502400 Oryza sativa ssp. japonica HOM05D004985 ORTHO05D005912 8.9e-93 344.4 252 67.1
C08p18810 Brassica napus HOM05D004985 ORTHO05D005912 2.0e-92 343.2 305 60.0
TAR622G1020 Trochodendron aralioides HOM05D004985 ORTHO05D005912 3.4e-92 342.4 301 61.8
Zm00001eb166440 Zea mays HOM05D004985 ORTHO05D005912 1.6e-89 333.6 259 66.0
Duzib084G0347 Durio zibethinus HOM05D004985 ORTHO05D005912 3.5e-89 332.4 299 59.9
Nn3g17450 Nelumbo nucifera HOM05D004985 ORTHO05D005912 1.0e-88 330.9 260 68.1
AagrBONN_evm.TU.Sc2ySwM_228.2773 Anthoceros agrestis HOM05D004985 ORTHO05D005912 2.4e-85 319.7 226 69.0
Cc11_g04830 Coffea canephora HOM05D004985 ORTHO05D005912 3.1e-85 319.3 262 66.0
BolC8t49507H Brassica oleracea HOM05D004985 ORTHO05D005912 7.6e-84 314.7 222 71.2
BcaC07g38933 Brassica carinata HOM05D004985 ORTHO05D005912 1.7e-83 313.5 219 71.7
Sc10g0009710 Simmondsia chinensis HOM05D004985 ORTHO05D005912 1.2e-81 307.4 217 71.4
Pp3c8_16890 Physcomitrium patens HOM05D004985 ORTHO05D005912 1.6e-81 307.0 250 61.2
AagrBONN_evm.TU.Sc2ySwM_117.3039 Anthoceros agrestis HOM05D004985 ORTHO05D005912 7.9e-81 304.7 213 70.9
SMO137G0315 Selaginella moellendorffii HOM05D004985 ORTHO05D005912 7.9e-81 304.7 225 64.9
CDE06G0240 Ceratophyllum demersum HOM05D004985 ORTHO05D005912 1.0e-80 304.3 204 73.5
Mapoly0023s0019 Marchantia polymorpha HOM05D004985 ORTHO05D005912 4.0e-77 292.4 240 61.2
CDE07G0155 Ceratophyllum demersum HOM05D004985 ORTHO05D005912 1.3e-70 270.8 301 49.2
Actinidia16126 Actinidia chinensis HOM05D003322 ORTHO05D005912 2.0e-68 263.5 287 51.9
Nitab4.5_0000744g0020 Nicotiana tabacum HOM05D004985 ORTHO05D005912 9.3e-66 254.6 428 40.4
PRCOL_00003809 Prasinoderma coloniale HOM05D004985 ORTHO05D005912 2.5e-63 246.5 230 54.8
SGA_v2.0_scaffold3G01460 Striga asiatica HOM05D004985 ORTHO05D005912 2.5e-63 246.5 142 85.2
MCO16G297 Micromonas commoda HOM05D004985 ORTHO05D005912 2.0e-60 236.9 224 52.2
Lj7A653T48 Lonicera japonica HOM05D004985 ORTHO05D005912 7.6e-60 235.0 142 78.9
Nitab4.5_0002968g0050 Nicotiana tabacum HOM05D004985 ORTHO05D005912 1.9e-58 230.3 133 81.2
Cre04.g217955 Chlamydomonas reinhardtii HOM05D004985 ORTHO05D005912 1.8e-56 223.8 220 50.0
Cre04.g217959 Chlamydomonas reinhardtii HOM05D004985 ORTHO05D005912 1.8e-56 223.8 220 50.0
SGA_v2.0_scaffold1066G53824 Striga asiatica HOM05D004985 ORTHO05D005912 1.3e-54 217.6 167 67.7
Cre01.g053150 Chlamydomonas reinhardtii HOM05D004424 ORTHO05D005476 7.7e-52 208.4 250 44.4
Cre01.g053000 Chlamydomonas reinhardtii HOM05D004424 ORTHO05D005476 2.2e-51 206.8 273 41.0
Cre10.g421700 Chlamydomonas reinhardtii HOM05D004424 ORTHO05D005476 2.2e-51 206.8 282 41.5
HPP92_012184 Vanilla planifolia HOM05D004985 ORTHO05D005912 2.0e-47 193.7 145 64.8
Haze_07724 Corylus avellana HOM05D004985 ORTHO05D005912 9.7e-47 191.4 151 64.2
HPP92_012182 Vanilla planifolia HOM05D004985 ORTHO05D005912 3.2e-42 176.4 112 75.9
EL10Ac1g02367 Beta vulgaris HOM05D004985 ORTHO05D005912 6.1e-41 172.2 138 65.2
Gohir.A07G164340 Gossypium hirsutum HOM05D004985 ORTHO05D005912 8.5e-35 151.8 97 77.3
CBR_g37694 Chara braunii HOM05D004985 ORTHO05D005912 2.7e-33 146.7 109 61.5
SalBow5G1356 Salvia bowleyana HOM05D004985 ORTHO05D005912 6.1e-33 145.6 101 79.2
Gohir.A06G085600 Gossypium hirsutum HOM05D004985 ORTHO05D005912 1.4e-32 144.4 97 75.3
Peaxi162Scf00086g01110 Petunia axillaris HOM05D004985 ORTHO05D005912 2.2e-30 137.1 156 53.8
SEGI_10948 Sequoiadendron giganteum HOM05D004985 ORTHO05D005912 2.4e-29 133.7 81 77.8
Oeu014405.1 Olea europaea HOM05D004985 ORTHO05D005912 1.1e-26 124.8 92 70.7
Cfa004103 Carpinus fangiana HOM05D004985 ORTHO05D005912 2.7e-25 120.2 157 46.5
Haze_15308 Corylus avellana HOM05D004985 ORTHO05D005912 3.5e-20 103.2 67 76.1
SHI27080 Sapria himalayana HOM05D004985 ORTHO05D005912 1.5e-18 97.8 87 58.6
Cfa024059 Carpinus fangiana HOM05D004985 ORTHO05D005912 8.9e-08 62.0 177 33.3


User provided reference genes

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