Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Migut.D01626 Erythranthe guttata HOM05D004908 ORTHO05D006418 9.6e-178 626.7 314 100.0
MSTRG.9592 Avicennia marina HOM05D004908 ORTHO05D006418 1.7e-118 429.9 336 69.0
SGA_v2.0_scaffold51G18774 Striga asiatica HOM05D004908 ORTHO05D006418 2.8e-113 412.5 352 63.9
Oeu032097.2 Olea europaea HOM05D004908 ORTHO05D006418 1.4e-99 367.1 369 58.5
Cc00_g03370 Coffea canephora HOM05D004908 ORTHO05D006418 5.8e-90 335.1 331 58.6
Peaxi162Scf01223g00009 Petunia axillaris HOM05D004908 ORTHO05D006418 3.2e-88 329.3 288 61.1
unitig_699.g19027 Utricularia gibba HOM05D004908 ORTHO05D006418 4.7e-84 315.5 298 57.7
Hma1.2p1_0060F.1_g032940 Hydrangea macrophylla HOM05D004908 ORTHO05D006418 1.1e-83 314.3 347 53.9
Sopen12g018880 Solanum pennellii HOM05D004908 ORTHO05D006418 1.4e-83 313.9 327 55.0
Dinv17436 Davidia involucrata HOM05D004908 ORTHO05D006418 3.1e-83 312.8 293 58.7
Cfa019355 Carpinus fangiana HOM05D004908 ORTHO05D006418 1.2e-82 310.8 313 56.2
CiPaw.12G009100 Carya illinoinensis HOM05D004908 ORTHO05D006418 2.6e-82 309.7 302 55.6
Thecc.03G001900 Theobroma cacao HOM05D004908 ORTHO05D006418 4.9e-81 305.4 315 54.9
Haze_07746 Corylus avellana HOM05D004908 ORTHO05D006418 2.4e-80 303.1 210 70.5
Cpa.g.sc94.75 Carica papaya HOM05D004908 ORTHO05D006418 3.2e-80 302.8 223 67.7
GSVIVG01008119001 Vitis vinifera HOM05D004908 ORTHO05D006418 4.1e-80 302.4 245 64.5
Lsat_1_v5_gn_5_22901 Lactuca sativa HOM05D004908 ORTHO05D006418 5.4e-80 302.0 212 68.4
Eucgr.B00624 Eucalyptus grandis HOM05D004908 ORTHO05D006418 9.2e-80 301.2 222 67.1
HanXRQChr05g0153521 Helianthus annuus HOM05D004908 ORTHO05D006418 9.2e-80 301.2 259 58.3
CSS0022679 Camellia sinensis var. sinensis HOM05D004908 ORTHO05D006418 1.2e-79 300.8 317 53.6
RcHm_v2.0_Chr7g0183321 Rosa chinensis HOM05D004908 ORTHO05D006418 1.2e-79 300.8 347 50.1
QL10p019966 Quercus lobata HOM05D004908 ORTHO05D006418 2.1e-79 300.1 303 54.1
SalBow7G1843 Salvia bowleyana HOM05D004908 ORTHO05D006418 1.3e-78 297.4 331 51.4
ECA246G3883 Erigeron canadensis HOM05D004908 ORTHO05D006418 1.7e-78 297.0 230 65.2
Prupe.5G207300 Prunus persica HOM05D004908 ORTHO05D006418 1.7e-78 297.0 302 54.3
Atru.chr9.517 Acer truncatum HOM05D004908 ORTHO05D006418 6.6e-78 295.0 303 53.5
Lj9C439G11 Lonicera japonica HOM05D004908 ORTHO05D006418 6.6e-78 295.0 213 69.0
Potri.006G227300 Populus trichocarpa HOM05D004908 ORTHO05D006418 8.6e-78 294.7 275 58.2
MD14G1214000 Malus domestica HOM05D004908 ORTHO05D006418 1.9e-77 293.5 301 54.2
TAR371G0785 Trochodendron aralioides HOM05D004908 ORTHO05D006418 2.5e-77 293.1 235 64.7
Manes.14G087300 Manihot esculenta HOM05D004908 ORTHO05D006418 5.6e-77 292.0 222 65.3
TWI81G0201 Tripterygium wilfordii HOM05D004908 ORTHO05D006418 5.6e-77 292.0 296 54.4
Gorai.008G298500 Gossypium raimondii HOM05D004908 ORTHO05D006418 1.6e-76 290.4 211 68.2
Sabra06G0175900 Salix brachista HOM05D004908 ORTHO05D006418 1.6e-76 290.4 332 51.8
CARHR019220 Cardamine hirsuta HOM05D004908 ORTHO05D006418 2.1e-76 290.0 217 65.4
Thhalv10008142m.g Eutrema salsugineum HOM05D004908 ORTHO05D006418 4.7e-76 288.9 224 64.7
Gohir.D12G277800 Gossypium hirsutum HOM05D004908 ORTHO05D006418 6.2e-76 288.5 211 67.8
Phvul.003G183300 Phaseolus vulgaris HOM05D004908 ORTHO05D006418 6.2e-76 288.5 231 62.8
BcaC05g25755 Brassica carinata HOM05D004908 ORTHO05D006418 8.1e-76 288.1 214 65.4
C05p16860 Brassica napus HOM05D004908 ORTHO05D006418 8.1e-76 288.1 214 65.4
FvH4_5g13640 Fragaria vesca HOM05D004908 ORTHO05D006418 8.1e-76 288.1 299 56.5
Gohir.A12G276800 Gossypium hirsutum HOM05D004908 ORTHO05D006418 8.1e-76 288.1 254 61.0
Sp1g16570 Schrenkiella parvula HOM05D004908 ORTHO05D006418 8.1e-76 288.1 217 65.0
BcaB07g31879 Brassica carinata HOM05D004908 ORTHO05D006418 1.1e-75 287.7 217 65.0
Carub.0001s1823 Capsella rubella HOM05D004908 ORTHO05D006418 1.4e-75 287.3 224 64.7
AL1G31040 Arabidopsis lyrata HOM05D004908 ORTHO05D006418 1.8e-75 287.0 224 63.4
CsaV3_1G006120 Cucumis sativus L. HOM05D004908 ORTHO05D006418 3.1e-75 286.2 307 54.7
Glyma.05G019500 Glycine max HOM05D004908 ORTHO05D006418 3.1e-75 286.2 291 54.0
Ciclev10021158m.g Citrus clementina HOM05D004908 ORTHO05D006418 4.0e-75 285.8 220 65.9
Lj4g0028183 Lotus japonicus HOM05D004908 ORTHO05D006418 5.2e-75 285.4 268 56.3
A06p14680 Brassica napus HOM05D004908 ORTHO05D006418 6.8e-75 285.0 214 64.5
BolC5t30387H Brassica oleracea HOM05D004908 ORTHO05D006418 6.8e-75 285.0 214 64.5
BraA06t24593Z Brassica rapa HOM05D004908 ORTHO05D006418 6.8e-75 285.0 214 64.5
AT1G18600 Arabidopsis thaliana HOM05D004908 ORTHO05D006418 8.9e-75 284.6 224 62.9
Sed0013495 Sechium edule HOM05D004908 ORTHO05D006418 2.0e-74 283.5 221 66.5
Nn4g23471 Nelumbo nucifera HOM05D004908 ORTHO05D006418 7.6e-74 281.6 255 60.8
Ah.11g047620 Amaranthus hybridus HOM05D004908 ORTHO05D006418 1.3e-73 280.8 297 52.9
Nitab4.5_0001797g0080 Nicotiana tabacum HOM05D004908 ORTHO05D006418 1.3e-73 280.8 357 50.1
ClCG04G011680 Citrullus lanatus HOM05D004908 ORTHO05D006418 1.7e-73 280.4 307 54.1
VMungo1215G2693 Vigna mungo HOM05D004908 ORTHO05D006418 2.2e-73 280.0 211 65.9
Nitab4.5_0006506g0020 Nicotiana tabacum HOM05D004908 ORTHO05D006418 2.9e-73 279.6 212 68.4
Duzib068G0428 Durio zibethinus HOM05D004908 ORTHO05D006418 4.9e-73 278.9 219 65.3
Hund02570 Selenicereus undatus HOM05D004908 ORTHO05D006418 4.9e-73 278.9 212 65.1
THA.LOC104808039 Tarenaya hassleriana HOM05D004908 ORTHO05D006418 2.4e-72 276.6 229 61.1
arahy.Tifrunner.gnm1.ann1.J6BFMQ Arachis hypogaea HOM05D004908 ORTHO05D006418 9.2e-72 274.6 315 52.1
arahy.Tifrunner.gnm1.ann1.PAN20U Arachis hypogaea HOM05D004908 ORTHO05D006418 9.2e-72 274.6 315 52.1
CANSAT80G1354 Cannabis sativa HOM05D004908 ORTHO05D006418 4.6e-71 272.3 345 47.8
Rhsim08G0143800 Rhododendron simsii HOM05D004908 ORTHO05D006418 1.3e-70 270.8 262 54.2
Aqoxy3G03654 Aquilegia oxysepala HOM05D004908 ORTHO05D006418 1.7e-70 270.4 208 64.4
EL10Ac5g11159 Beta vulgaris HOM05D004908 ORTHO05D006418 2.3e-70 270.0 230 61.7
Aa31LG7G3360 Aethionema arabicum HOM05D004908 ORTHO05D006418 3.0e-70 269.6 216 59.7
Prupe.5G207200 Prunus persica HOM05D004908 ORTHO05D006418 1.1e-69 267.7 343 46.1
TPR.G1983 Trifolium pratense HOM05D004908 ORTHO05D006418 2.5e-69 266.5 299 52.2
Medtr4g109700 Medicago truncatula HOM05D004908 ORTHO05D006418 5.6e-69 265.4 309 48.9
AUR62039652 Chenopodium quinoa HOM05D004908 ORTHO05D006418 2.1e-68 263.5 299 51.2
Lalb_Chr07g0178341 Lupinus albus HOM05D004908 ORTHO05D006418 1.4e-67 260.8 285 51.9
PSO478G4625 Papaver somniferum HOM05D004908 ORTHO05D006418 2.4e-67 260.0 198 66.2
AUR62021531 Chenopodium quinoa HOM05D004908 ORTHO05D006418 5.2e-67 258.8 301 49.5
MBI16_g10851_MAGBIO Magnolia biondii HOM05D004908 ORTHO05D006418 2.9e-65 253.1 315 48.3
DCAR_011562 Daucus carota HOM05D004908 ORTHO05D006418 8.4e-65 251.5 288 52.1
Duzib205G0531 Durio zibethinus HOM05D004908 ORTHO05D006418 3.9e-62 242.7 239 52.3
Manes.14G087101 Manihot esculenta HOM05D004908 ORTHO05D006418 3.9e-62 242.7 285 48.8
MELO3C002041.2 Cucumis melo HOM05D004908 ORTHO05D006418 5.1e-62 242.3 286 52.1
CDE07G0469 Ceratophyllum demersum HOM05D004908 ORTHO05D006418 2.0e-58 230.3 302 45.4
SHI17490 Sapria himalayana HOM05D004908 ORTHO05D006418 4.4e-58 229.2 214 58.4
PSO017G6704 Papaver somniferum HOM05D004908 ORTHO05D006418 5.8e-58 228.8 300 45.0
PSO017G5063 Papaver somniferum HOM05D004908 ORTHO05D006418 1.3e-57 227.6 300 44.7
SalBow7G4422 Salvia bowleyana HOM05D004908 ORTHO05D006418 3.8e-57 226.1 347 45.0
Os01g0763100 Oryza sativa ssp. japonica HOM05D004908 ORTHO05D006418 4.2e-56 222.6 201 56.7
SalBow7G0217 Salvia bowleyana HOM05D004908 ORTHO05D006418 4.6e-55 219.2 350 44.6
Sc04g0004310 Simmondsia chinensis HOM05D004908 ORTHO05D006418 3.0e-54 216.5 327 41.6
PGR083G2541 Punica granatum HOM05D004908 ORTHO05D006418 5.6e-53 212.2 261 46.7
vmacro17622 Vaccinium macrocarpon HOM05D004908 ORTHO05D006418 9.6e-53 211.5 210 56.2
FAN08G1663 Fragaria x ananassa HOM05D004908 ORTHO05D006418 3.6e-52 209.5 340 41.5
FAN13G1921 Fragaria x ananassa HOM05D004908 ORTHO05D006418 1.4e-51 207.6 338 42.3
HPP92_019201 Vanilla planifolia HOM05D004908 ORTHO05D006418 6.9e-51 205.3 202 52.0
FAN13G3071 Fragaria x ananassa HOM05D004908 ORTHO05D006418 2.0e-50 203.8 222 50.0
ATR0827G189 Amborella trichopoda HOM05D004908 ORTHO05D006418 3.4e-50 203.0 196 55.1
FAN08G0411 Fragaria x ananassa HOM05D004908 ORTHO05D006418 4.9e-49 199.1 199 52.8
FAN13G1644 Fragaria x ananassa HOM05D004908 ORTHO05D006418 4.2e-48 196.1 208 51.0
Pp3c22_7870 Physcomitrium patens HOM05D004908 ORTHO05D006418 1.2e-47 194.5 218 49.1
FAN18G1888 Fragaria x ananassa HOM05D004908 ORTHO05D006418 1.6e-47 194.1 297 41.4
PSO017G2617 Papaver somniferum HOM05D004908 ORTHO05D006418 2.7e-47 193.4 198 53.0
SalBow7G4769 Salvia bowleyana HOM05D004908 ORTHO05D006418 3.5e-47 193.0 344 42.7
Zm00001eb370410 Zea mays HOM05D004908 ORTHO05D006418 3.7e-44 183.0 257 44.0
AL2G34040 Arabidopsis lyrata HOM05D004908 ORTHO05D006418 4.8e-44 182.6 251 43.8
AT1G74130 Arabidopsis thaliana HOM05D004908 ORTHO05D006418 9.0e-43 178.3 221 44.3
Solyc12g038600.2 Solanum lycopersicum HOM05D004908 ORTHO05D006418 1.2e-42 177.9 136 65.4
Mapoly0086s0048 Marchantia polymorpha HOM05D004908 ORTHO05D006418 2.6e-42 176.8 275 40.0
AagrBONN_evm.TU.Sc2ySwM_368.1628 Anthoceros agrestis HOM05D004908 ORTHO05D006418 3.4e-42 176.4 191 48.2
Gohir.D10G255500 Gossypium hirsutum HOM05D004908 ORTHO05D006418 5.8e-42 175.6 131 68.7
Carub.0002s2094 Capsella rubella HOM05D004908 ORTHO05D006418 1.3e-41 174.5 220 45.0
A07p40020 Brassica napus HOM05D003320 ORTHO05D003941 4.2e-40 169.5 216 44.4
BraA07t31547Z Brassica rapa HOM05D003320 ORTHO05D003941 4.2e-40 169.5 216 44.9
Psat0s3566g0040 Pisum sativum HOM05D004908 ORTHO05D006418 1.2e-39 167.9 232 45.7
RcHm_v2.0_Chr1g0346931 Rosa chinensis HOM05D004908 ORTHO05D006418 1.2e-39 167.9 146 60.3
FvH4_5g13620 Fragaria vesca HOM05D004908 ORTHO05D006418 2.1e-39 167.2 191 49.7
Carub.0002s2095 Capsella rubella HOM05D004908 ORTHO05D006418 6.0e-39 165.6 223 44.8
CARHR067290 Cardamine hirsuta HOM05D004908 ORTHO05D006418 7.9e-39 165.2 249 41.0
Glyma.17G080300 Glycine max HOM05D004908 ORTHO05D006418 1.8e-38 164.1 170 52.4
BolC6t39860H Brassica oleracea HOM05D004908 ORTHO05D006418 1.8e-35 154.1 207 44.0
BcaC08g46817 Brassica carinata HOM05D004908 ORTHO05D006418 4.1e-35 152.9 242 39.3
MCO07G692 Micromonas commoda HOM05D004908 ORTHO05D006418 6.9e-35 152.1 233 37.8
Thhalv10019561m.g Eutrema salsugineum HOM05D004908 ORTHO05D006418 2.0e-34 150.6 216 44.9
SEGI_05482 Sequoiadendron giganteum HOM05D004908 ORTHO05D006418 2.9e-33 146.7 156 53.2
BcaC08g46813 Brassica carinata HOM05D004908 ORTHO05D006418 5.0e-33 146.0 206 42.7
Solyc12g038590.2 Solanum lycopersicum HOM05D004908 ORTHO05D006418 1.9e-32 144.1 196 47.4
C06p48280 Brassica napus HOM05D004908 ORTHO05D006418 5.5e-32 142.5 173 46.2
Prupe.3G124800 Prunus persica HOM05D004908 ORTHO05D006418 1.8e-30 137.5 225 40.4
AT1G74140 Arabidopsis thaliana HOM05D004908 ORTHO05D006418 3.0e-30 136.7 177 44.1
BcaC08g46846 Brassica carinata HOM05D003320 ORTHO05D003941 3.0e-30 136.7 223 38.6
C06p48290 Brassica napus HOM05D003320 ORTHO05D003941 6.7e-30 135.6 257 38.1
Actinidia13428 Actinidia chinensis HOM05D004908 ORTHO05D006418 1.1e-29 134.8 101 67.3
RcHm_v2.0_Chr6g0258631 Rosa chinensis HOM05D004908 ORTHO05D006418 9.7e-29 131.7 121 58.7
RcHm_v2.0_Chr7g0183341 Rosa chinensis HOM05D004908 ORTHO05D006418 6.9e-27 125.6 113 57.5
Actinidia04812 Actinidia chinensis HOM05D004908 ORTHO05D006418 3.4e-26 123.2 89 68.5
vmacro17623 Vaccinium macrocarpon HOM05D004908 ORTHO05D006418 2.2e-25 120.6 89 68.5
HPP92_019191 Vanilla planifolia HOM05D004908 ORTHO05D006418 9.4e-24 115.2 121 47.9
RcHm_v2.0_Chr6g0258651 Rosa chinensis HOM05D004908 ORTHO05D006418 1.6e-23 114.4 76 71.1
Gohir.A06G087200 Gossypium hirsutum HOM05D004908 ORTHO05D006418 1.0e-22 111.7 86 60.5
RcHm_v2.0_Chr1g0346941 Rosa chinensis HOM05D004908 ORTHO05D006418 3.7e-20 103.2 70 70.0
CBR_g24070 Chara braunii HOM05D000019 ORTHO05D000002 4.5e-18 96.3 100 42.0
BolC6t39863H Brassica oleracea HOM05D004908 ORTHO05D039080 1.1e-16 91.7 179 36.9
FvH4_5g13610 Fragaria vesca HOM05D004908 ORTHO05D006418 5.5e-16 89.4 73 63.0
Dinv17434 Davidia involucrata HOM05D004908 ORTHO05D006418 3.0e-14 83.6 84 54.8
BcaC08g46819 Brassica carinata HOM05D004908 ORTHO05D039080 9.7e-13 78.6 77 50.6
Gohir.A07G149500 Gossypium hirsutum HOM05D004908 ORTHO05D006418 2.2e-09 67.4 45 66.7
PRCOL_00000970 Prasinoderma coloniale HOM05D049057 ORTHO05D049180 2.3e-06 57.4 183 29.0


User provided reference genes

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