Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Migut.D01615 Erythranthe guttata HOM05D005253 ORTHO05D006058 3.5e-154 548.5 328 100.0
MSTRG.9581 Avicennia marina HOM05D005253 ORTHO05D006058 4.1e-107 392.1 343 72.6
SGA_v2.0_scaffold65G22104 Striga asiatica HOM05D005253 ORTHO05D006058 1.3e-95 354.0 328 66.5
SalBow7G2030 Salvia bowleyana HOM05D005253 ORTHO05D006058 3.4e-93 345.9 346 63.0
Oeu014427.1 Olea europaea HOM05D005253 ORTHO05D006058 5.5e-83 312.0 327 66.4
unitig_578.g15937 Utricularia gibba HOM05D005253 ORTHO05D006058 2.1e-79 300.1 341 58.4
unitig_8.g4498 Utricularia gibba HOM05D005253 ORTHO05D006058 3.1e-78 296.2 341 60.7
TWI60G1362 Tripterygium wilfordii HOM05D005253 ORTHO05D006058 4.2e-75 285.8 338 58.3
Sopen03g033840 Solanum pennellii HOM05D005253 ORTHO05D006058 6.0e-74 282.0 343 60.3
Solyc03g114760.3 Solanum lycopersicum HOM05D005253 ORTHO05D006058 1.8e-73 280.4 343 59.5
PGSC0003DMG400024524 Solanum tuberosum HOM05D005253 ORTHO05D006058 1.1e-72 277.7 343 60.6
GSVIVG01008154001 Vitis vinifera HOM05D005253 ORTHO05D006058 9.6e-72 274.6 344 59.0
Peaxi162Scf00017g03254 Petunia axillaris HOM05D005253 ORTHO05D006058 1.3e-71 274.2 347 59.7
Cfa017731 Carpinus fangiana HOM05D005253 ORTHO05D006058 1.6e-71 273.9 337 57.6
Haze_18511 Corylus avellana HOM05D005253 ORTHO05D006058 2.1e-71 273.5 338 56.8
Nitab4.5_0002467g0110 Nicotiana tabacum HOM05D005253 ORTHO05D006058 2.1e-71 273.5 346 58.7
Nitab4.5_0005994g0050 Nicotiana tabacum HOM05D005253 ORTHO05D006058 3.1e-70 269.6 344 60.5
Nitab4.5_0002041g0040 Nicotiana tabacum HOM05D005253 ORTHO05D006058 9.0e-70 268.1 347 56.5
Dinv38642 Davidia involucrata HOM05D005253 ORTHO05D006058 2.0e-69 266.9 346 56.1
Gohir.A09G243900 Gossypium hirsutum HOM05D005253 ORTHO05D006058 4.5e-69 265.8 333 55.0
Rhsim08G0142100 Rhododendron simsii HOM05D005253 ORTHO05D006058 1.4e-67 260.8 347 51.6
Peaxi162Scf00365g00114 Petunia axillaris HOM05D005253 ORTHO05D006058 4.2e-67 259.2 338 50.6
Lsat_1_v5_gn_5_23380 Lactuca sativa HOM05D005253 ORTHO05D006058 5.5e-67 258.8 348 54.3
TWI81G0215 Tripterygium wilfordii HOM05D005253 ORTHO05D006058 7.2e-67 258.5 338 55.6
Gohir.D07G063700 Gossypium hirsutum HOM05D005253 ORTHO05D006058 1.2e-66 257.7 338 53.8
vmacro17641 Vaccinium macrocarpon HOM05D005253 ORTHO05D006058 1.2e-66 257.7 362 47.8
Gorai.006G268700 Gossypium raimondii HOM05D005253 ORTHO05D006058 2.1e-66 256.9 333 56.8
Ciclev10020920m.g Citrus clementina HOM05D005253 ORTHO05D006058 7.9e-66 255.0 340 52.4
Sed0023471 Sechium edule HOM05D005253 ORTHO05D006058 7.9e-66 255.0 352 54.5
Dinv17459 Davidia involucrata HOM05D005253 ORTHO05D006058 3.9e-65 252.7 317 58.0
Prupe.5G210000 Prunus persica HOM05D005253 ORTHO05D006058 9.7e-64 248.1 340 56.8
Duzib068G0534 Durio zibethinus HOM05D005253 ORTHO05D006058 1.6e-63 247.3 339 54.6
MBI14_g08108_MAGBIO Magnolia biondii HOM05D005253 ORTHO05D006058 2.2e-63 246.9 344 51.7
Duzib205G1609 Durio zibethinus HOM05D005253 ORTHO05D006058 2.8e-63 246.5 336 49.1
CSS0036905 Camellia sinensis var. sinensis HOM05D005253 ORTHO05D006058 3.7e-63 246.1 343 55.7
Gohir.D09G244600 Gossypium hirsutum HOM05D005253 ORTHO05D006058 1.8e-62 243.8 333 52.0
arahy.Tifrunner.gnm1.ann1.TSF3K2 Arachis hypogaea HOM05D005253 ORTHO05D006058 4.1e-62 242.7 344 53.2
arahy.Tifrunner.gnm1.ann1.399KXC Arachis hypogaea HOM05D005253 ORTHO05D006058 1.0e-60 238.0 344 54.4
MD06G1205700 Malus domestica HOM05D005253 ORTHO05D006058 1.4e-59 234.2 338 53.6
Gohir.A07G058832 Gossypium hirsutum HOM05D005253 ORTHO05D006058 1.9e-59 233.8 340 51.2
Lj4g0025893 Lotus japonicus HOM05D005253 ORTHO05D006058 1.9e-59 233.8 304 53.0
FAN13G1214 Fragaria x ananassa HOM05D005253 ORTHO05D006058 2.5e-59 233.4 331 55.0
FvH4_5g13401 Fragaria vesca HOM05D005253 ORTHO05D006058 4.2e-59 232.6 331 55.3
Glyma.17G081700 Glycine max HOM05D005253 ORTHO05D006058 4.2e-59 232.6 338 52.1
Cc04_g08280 Coffea canephora HOM05D005253 ORTHO05D006058 5.5e-59 232.3 346 49.1
TPR.G1989 Trifolium pratense HOM05D005253 ORTHO05D006058 5.5e-59 232.3 333 46.5
FAN08G1625 Fragaria x ananassa HOM05D005253 ORTHO05D006058 7.2e-59 231.9 331 56.2
Gorai.001G067300 Gossypium raimondii HOM05D005253 ORTHO05D006058 9.4e-59 231.5 338 50.0
Glyma.05G018200 Glycine max HOM05D005253 ORTHO05D006058 1.2e-58 231.1 338 50.9
FAN18G4071 Fragaria x ananassa HOM05D005253 ORTHO05D006058 1.6e-58 230.7 342 53.8
CAN.G982.39 Capsicum annuum HOM05D005253 ORTHO05D006058 7.9e-58 228.4 425 44.9
Medtr4g109960 Medicago truncatula HOM05D005253 ORTHO05D006058 1.8e-57 227.3 338 45.3
Potri.004G107000 Populus trichocarpa HOM05D005253 ORTHO05D006058 2.3e-57 226.9 342 50.0
MD14G1216600 Malus domestica HOM05D005253 ORTHO05D006058 3.9e-57 226.1 342 50.0
ECA246G0831 Erigeron canadensis HOM05D005253 ORTHO05D006058 8.8e-57 224.9 342 48.2
THA.LOC104818357 Tarenaya hassleriana HOM05D005253 ORTHO05D006058 2.0e-56 223.8 330 53.0
TAR371G0033 Trochodendron aralioides HOM05D005253 ORTHO05D006058 2.6e-56 223.4 345 53.0
Lalb_Chr13g0302681 Lupinus albus HOM05D005253 ORTHO05D006058 3.3e-56 223.0 302 52.6
RcHm_v2.0_Chr7g0183731 Rosa chinensis HOM05D005253 ORTHO05D006058 5.7e-56 222.2 332 54.8
PSO478G2666 Papaver somniferum HOM05D005253 ORTHO05D006058 9.7e-56 221.5 337 49.3
Hund09956 Selenicereus undatus HOM05D005253 ORTHO05D006058 1.7e-55 220.7 316 54.4
TPR.G2086 Trifolium pratense HOM05D005253 ORTHO05D006058 2.8e-55 219.9 303 46.5
Manes.14G089100 Manihot esculenta HOM05D005253 ORTHO05D006058 3.7e-55 219.5 343 50.7
AUR62039667 Chenopodium quinoa HOM05D005253 ORTHO05D006058 1.1e-54 218.0 281 60.5
PSO017G7367 Papaver somniferum HOM05D005253 ORTHO05D006058 1.4e-54 217.6 336 44.6
Thhalv10014100m.g Eutrema salsugineum HOM05D005253 ORTHO05D006058 1.5e-53 214.2 332 44.9
EL10Ac5g11189 Beta vulgaris HOM05D005253 ORTHO05D006058 2.0e-53 213.8 285 56.5
Manes.06G080800 Manihot esculenta HOM05D005253 ORTHO05D006058 2.0e-53 213.8 339 51.0
VMungo1215G3162 Vigna mungo HOM05D005253 ORTHO05D006058 2.0e-53 213.8 338 54.1
AT5G08120 Arabidopsis thaliana HOM05D005253 ORTHO05D006058 2.6e-53 213.4 328 48.8
AL6G18490 Arabidopsis lyrata HOM05D005253 ORTHO05D006058 5.9e-53 212.2 328 48.2
Ah.02g114240 Amaranthus hybridus HOM05D005253 ORTHO05D006058 5.0e-52 209.1 302 54.0
QL10p020742 Quercus lobata HOM05D005253 ORTHO05D006058 6.5e-52 208.8 507 40.6
COL.COLO4_27496 Corchorus olitorius HOM05D005253 ORTHO05D006058 3.2e-51 206.5 322 46.3
Phvul.003G182200 Phaseolus vulgaris HOM05D005253 ORTHO05D006058 5.5e-51 205.7 336 49.1
Hma1.2p1_0060F.1_g032740 Hydrangea macrophylla HOM05D005253 ORTHO05D006058 9.4e-51 204.9 381 41.2
Nn3g17535 Nelumbo nucifera HOM05D005253 ORTHO05D006058 9.4e-51 204.9 347 49.6
CANSAT80G0823 Cannabis sativa HOM05D005253 ORTHO05D006058 4.7e-50 202.6 343 46.6
Lj9C438G4 Lonicera japonica HOM05D005253 ORTHO05D006058 1.0e-49 201.4 282 58.9
SHI17413 Sapria himalayana HOM05D005253 ORTHO05D006058 2.3e-49 200.3 324 46.6
HanXRQChr02g0051141 Helianthus annuus HOM05D005253 ORTHO05D006058 3.9e-49 199.5 311 50.2
HanXRQChr05g0157441 Helianthus annuus HOM05D005253 ORTHO05D006058 3.9e-49 199.5 341 48.1
CARHR205070 Cardamine hirsuta HOM05D005253 ORTHO05D006058 1.3e-47 194.5 334 44.6
Cpa.g.sc3.232 Carica papaya HOM05D005253 ORTHO05D006058 2.2e-47 193.7 345 47.5
ClCG04G011560 Citrullus lanatus HOM05D005253 ORTHO05D006058 4.1e-46 189.5 352 40.3
PGR044G0085 Punica granatum HOM05D005253 ORTHO05D006058 4.1e-46 189.5 320 47.8
CDE05G1733 Ceratophyllum demersum HOM05D005253 ORTHO05D006058 1.2e-45 188.0 304 46.4
DCAR_010175 Daucus carota HOM05D005253 ORTHO05D006058 2.0e-45 187.2 350 43.1
Hund02544 Selenicereus undatus HOM05D005253 ORTHO05D006058 2.6e-45 186.8 303 50.2
Sc04g0003900 Simmondsia chinensis HOM05D005253 ORTHO05D006058 2.6e-45 186.8 300 43.3
ATR0691G224 Amborella trichopoda HOM05D005253 ORTHO05D006058 4.5e-45 186.0 309 41.7
AUR62032138 Chenopodium quinoa HOM05D005253 ORTHO05D006058 1.3e-44 184.5 258 58.9
Nitab4.5_0001797g0020 Nicotiana tabacum HOM05D005253 ORTHO05D006058 2.2e-44 183.7 249 54.6
BraA10t44904Z Brassica rapa HOM05D005253 ORTHO05D006058 4.7e-42 176.0 337 39.2
Glyma.04G159100 Glycine max HOM05D005253 ORTHO05D006058 4.7e-42 176.0 322 39.1
C09p68830 Brassica napus HOM05D005253 ORTHO05D006058 6.1e-42 175.6 335 39.4
Aqoxy3G03749 Aquilegia oxysepala HOM05D005253 ORTHO05D006058 1.0e-41 174.9 333 39.6
Ca_21755_v3 Cicer arietinum L. HOM05D005253 ORTHO05D006058 1.4e-41 174.5 333 39.3
BcaB08g37285 Brassica carinata HOM05D005253 ORTHO05D006058 1.8e-41 174.1 335 39.1
MELO3C002054.2 Cucumis melo HOM05D005253 ORTHO05D006058 2.3e-41 173.7 350 38.9
Lj1g0009577 Lotus japonicus HOM05D005253 ORTHO05D006058 2.3e-41 173.7 292 50.0
Carub.0006s0700 Capsella rubella HOM05D005253 ORTHO05D006058 4.8e-39 166.0 330 48.2
CiPaw.16G080100 Carya illinoinensis HOM05D005253 ORTHO05D006058 6.3e-39 165.6 258 56.6
PSO063G5368 Papaver somniferum HOM05D005253 ORTHO05D006058 6.3e-39 165.6 347 43.5
PSO782G3834 Papaver somniferum HOM05D005253 ORTHO05D006058 1.8e-38 164.1 347 39.8
Ah.11g047400 Amaranthus hybridus HOM05D005253 ORTHO05D006058 5.3e-38 162.5 281 44.5
CDE02G3817 Ceratophyllum demersum HOM05D005253 ORTHO05D006058 7.0e-38 162.2 301 40.9
Eucgr.K02550 Eucalyptus grandis HOM05D005253 ORTHO05D006058 3.5e-37 159.8 263 49.0
A10p28550 Brassica napus HOM05D005253 ORTHO05D006058 4.5e-37 159.5 336 37.8
Sp6g34840 Schrenkiella parvula HOM05D005253 ORTHO05D006058 1.3e-36 157.9 361 36.0
Thecc.03G108400 Theobroma cacao HOM05D005253 ORTHO05D006058 1.0e-33 148.3 211 53.6
CsaV3_1G006260 Cucumis sativus L. HOM05D005253 ORTHO05D006058 1.4e-33 147.9 191 52.9
BolC9t59630H Brassica oleracea HOM05D005253 ORTHO05D006058 1.8e-33 147.5 357 33.9
Atru.chr4.1592 Acer truncatum HOM05D005253 ORTHO05D006058 3.0e-33 146.7 346 43.9
Zm00001eb380690 Zea mays HOM05D005253 ORTHO05D006058 6.8e-33 145.6 297 36.4
HPP92_015550 Vanilla planifolia HOM05D005253 ORTHO05D006058 1.5e-32 144.4 295 34.6
Aa31LG3G18420 Aethionema arabicum HOM05D005253 ORTHO05D006058 2.6e-32 143.7 351 35.0
Prupe.8G074000 Prunus persica HOM05D005253 ORTHO05D006058 7.5e-32 142.1 212 45.3
HPP92_019902 Vanilla planifolia HOM05D005253 ORTHO05D006058 1.3e-31 141.4 284 37.7
Zm00001eb280850 Zea mays HOM05D005253 ORTHO05D006058 1.7e-31 141.0 296 36.1
Peaxi162Scf00091g00143 Petunia axillaris HOM05D005253 ORTHO05D006058 2.4e-30 137.1 228 43.0
Aqoxy3G00549 Aquilegia oxysepala HOM05D005253 ORTHO05D006058 8.5e-28 128.6 344 35.5
Psat4g046080 Pisum sativum HOM05D005253 ORTHO05D006058 8.5e-28 128.6 288 34.7
Sabra04G0074900 Salix brachista HOM05D005253 ORTHO05D006058 8.0e-26 122.1 281 38.1
Actinidia04794 Actinidia chinensis HOM05D005253 ORTHO05D006058 1.0e-25 121.7 121 64.5
Oeu014549.1 Olea europaea HOM05D005253 ORTHO05D006058 3.0e-25 120.2 108 62.0
Actinidia10441 Actinidia chinensis HOM05D005253 ORTHO05D006058 7.0e-22 109.0 131 56.5
arahy.Tifrunner.gnm1.ann1.U6KDHT Arachis hypogaea HOM05D005253 ORTHO05D006058 4.5e-21 106.3 286 36.4
arahy.Tifrunner.gnm1.ann1.4B3W67 Arachis hypogaea HOM05D005253 ORTHO05D006058 2.3e-20 104.0 286 34.6
Actinidia04795 Actinidia chinensis HOM05D005253 ORTHO05D006058 3.6e-18 96.7 178 39.3
Nn4g23537 Nelumbo nucifera HOM05D005253 ORTHO05D006058 8.0e-18 95.5 100 57.0
SEGI_36320 Sequoiadendron giganteum HOM05D005253 ORTHO05D006058 1.8e-17 94.4 369 33.3
Os09g0476000 Oryza sativa ssp. japonica HOM05D005253 ORTHO05D006058 2.3e-17 94.0 194 34.5
TPR.G28909 Trifolium pratense HOM05D005253 ORTHO05D006058 5.2e-17 92.8 95 56.8
Os06g0284800 Oryza sativa ssp. japonica HOM05D005253 ORTHO05D006058 6.8e-17 92.4 291 29.9
Zm00001eb315970 Zea mays HOM05D005253 ORTHO05D006058 1.7e-15 87.8 248 36.3
BcaB08g37286 Brassica carinata HOM05D005460 ORTHO05D006058 5.4e-14 82.8 271 29.2
TAR629G1609 Trochodendron aralioides HOM05D004464 ORTHO05D005135 5.9e-13 79.3 282 40.4
Oeu051243.1 Olea europaea HOM05D005253 ORTHO05D006058 8.6e-12 75.5 90 52.2
Nn4g23536 Nelumbo nucifera HOM05D005253 ORTHO05D006058 1.9e-11 74.3 91 52.7
Duzib132G0740 Durio zibethinus HOM05D005253 ORTHO05D006058 2.3e-09 67.4 75 52.0
SMO134G0145 Selaginella moellendorffii HOM05D025852 ORTHO05D006058 2.6e-08 63.9 357 28.9
CsaV3_2G035990 Cucumis sativus L. HOM05D000092 ORTHO05D020529 7.5e-08 62.4 46 60.9
BraA02t04942Z Brassica rapa HOM05D009919 ORTHO05D012044 1.7e-07 61.2 116 39.7
AagrBONN_evm.TU.Sc2ySwM_368.1809 Anthoceros agrestis HOM05D025852 ORTHO05D031190 6.4e-07 59.3 371 25.9


User provided reference genes

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