Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Migut.D01400 Erythranthe guttata HOM05D007952 ORTHO05D009823 3.5e-61 238.0 115 100.0
Lsat_1_v5_gn_4_63021 Lactuca sativa HOM05D007952 ORTHO05D009823 4.4e-48 194.5 158 65.8
Lsat_1_v5_gn_4_99801 Lactuca sativa HOM05D007952 ORTHO05D009823 5.6e-35 151.0 72 100.0
MBI08_g48227_MAGBIO Magnolia biondii HOM05D007952 ORTHO05D009823 5.6e-35 151.0 72 100.0
Peaxi162Scf00987g00215 Petunia axillaris HOM05D007952 ORTHO05D009823 5.6e-35 151.0 72 100.0
PGSC0003DMG400028997 Solanum tuberosum HOM05D007952 ORTHO05D009823 5.6e-35 151.0 72 100.0
PGSC0003DMG400035391 Solanum tuberosum HOM05D007952 ORTHO05D009823 5.6e-35 151.0 72 100.0
unitig_87.g27919 Utricularia gibba HOM05D007952 ORTHO05D009823 5.6e-35 151.0 72 100.0
unitig_87.g28035 Utricularia gibba HOM05D007952 ORTHO05D009823 5.6e-35 151.0 72 100.0
unitig_91.g26519 Utricularia gibba HOM05D007952 ORTHO05D009823 5.6e-35 151.0 72 100.0
CSS0039937 Camellia sinensis var. sinensis HOM05D007952 ORTHO05D009823 2.1e-34 149.1 72 98.6
Nn029s41587 Nelumbo nucifera HOM05D007952 ORTHO05D009823 2.8e-34 148.7 72 98.6
Nn064s42224 Nelumbo nucifera HOM05D007952 ORTHO05D009823 2.8e-34 148.7 72 98.6
Nn206s45068 Nelumbo nucifera HOM05D007952 ORTHO05D009823 2.8e-34 148.7 72 98.6
Nn219s45283 Nelumbo nucifera HOM05D007952 ORTHO05D009823 2.8e-34 148.7 72 98.6
Nn5g29057 Nelumbo nucifera HOM05D007952 ORTHO05D009823 2.8e-34 148.7 72 98.6
Oeu020621.1 Olea europaea HOM05D007952 ORTHO05D009823 2.8e-34 148.7 72 97.2
Lj2C1239G84 Lonicera japonica HOM05D007952 ORTHO05D009823 8.1e-34 147.1 72 98.6
EL10As10g23962 Beta vulgaris HOM05D007952 ORTHO05D009823 1.4e-33 146.4 72 98.6
ECA247G0757 Erigeron canadensis HOM05D000006 ORTHO05D000001 3.1e-33 145.2 89 82.0
Medtr0002s0270 Medicago truncatula HOM05D007952 ORTHO05D009823 5.3e-33 144.4 72 95.8
Sc01g0006530 Simmondsia chinensis HOM05D007952 ORTHO05D009823 6.9e-33 144.1 72 95.8
Atru.chr9.365 Acer truncatum HOM05D007952 ORTHO05D009823 1.5e-32 142.9 72 94.4
BcaB02g11353 Brassica carinata HOM05D007952 ORTHO05D009823 1.5e-32 142.9 67 100.0
Atru.chr13.2454 Acer truncatum HOM05D007952 ORTHO05D009823 5.8e-32 141.0 66 100.0
Sc23g0003910 Simmondsia chinensis HOM05D007952 ORTHO05D009823 7.1e-30 134.0 72 90.3
SEGI_38349 Sequoiadendron giganteum HOM05D007952 ORTHO05D009823 6.7e-28 127.5 72 87.5
Sc04g0003580 Simmondsia chinensis HOM05D007952 ORTHO05D009823 1.5e-27 126.3 67 91.0
EL10Ac6g15366 Beta vulgaris HOM05D007952 ORTHO05D009823 3.3e-27 125.2 78 79.5
ECA246G1432 Erigeron canadensis HOM05D007952 ORTHO05D009823 5.7e-27 124.4 72 87.5
SEGI_08440 Sequoiadendron giganteum HOM05D007952 ORTHO05D009823 5.7e-27 124.4 72 86.1
SEGI_09919 Sequoiadendron giganteum HOM05D007952 ORTHO05D009823 5.7e-27 124.4 72 86.1
SEGI_21867 Sequoiadendron giganteum HOM05D007952 ORTHO05D009823 5.7e-27 124.4 72 86.1
Nn6g32821 Nelumbo nucifera HOM05D007952 ORTHO05D009823 1.6e-26 122.9 60 96.7
Nn6g32826 Nelumbo nucifera HOM05D007952 ORTHO05D009823 1.6e-26 122.9 60 96.7
arahy.Tifrunner.gnm1.ann1.J5KLX8 Arachis hypogaea HOM05D007952 ORTHO05D009823 8.2e-26 120.6 70 81.4
Ca_02733_v3 Cicer arietinum L. HOM05D008016 ORTHO05D009823 2.4e-25 119.0 146 52.1
ECA232G1868 Erigeron canadensis HOM05D000002 ORTHO05D002065 2.4e-25 119.0 57 94.7
Hma1.2p1_0594F.1_g185798 Hydrangea macrophylla HOM05D007952 ORTHO05D009823 4.1e-25 118.2 56 98.2
Nn6g33130 Nelumbo nucifera HOM05D007952 ORTHO05D009823 5.9e-24 114.4 55 98.2
arahy.Tifrunner.gnm1.ann1.0845WK Arachis hypogaea HOM05D007952 ORTHO05D009823 1.0e-23 113.6 51 100.0
arahy.Tifrunner.gnm1.ann1.88RRM9 Arachis hypogaea HOM05D007952 ORTHO05D009823 1.0e-23 113.6 51 100.0
arahy.Tifrunner.gnm1.ann1.GIFH8E Arachis hypogaea HOM05D007952 ORTHO05D009823 1.0e-23 113.6 51 100.0
arahy.Tifrunner.gnm1.ann1.RE2PS1 Arachis hypogaea HOM05D007952 ORTHO05D009823 1.0e-23 113.6 51 100.0
arahy.Tifrunner.gnm1.ann1.XUIM66 Arachis hypogaea HOM05D007952 ORTHO05D009823 1.0e-23 113.6 51 100.0
Oeu022560.1 Olea europaea HOM05D007952 ORTHO05D009823 1.0e-23 113.6 67 80.6
arahy.Tifrunner.gnm1.ann1.TT5YJH Arachis hypogaea HOM05D007952 ORTHO05D009823 2.2e-23 112.5 92 65.2
Nitab4.5_0004552g0010 Nicotiana tabacum HOM05D000796 ORTHO05D009823 6.5e-23 110.9 56 92.9
arahy.Tifrunner.gnm1.ann1.HDQ4NC Arachis hypogaea HOM05D007952 ORTHO05D009823 2.5e-22 109.0 51 96.1
Medtr3g035635 Medicago truncatula HOM05D007952 ORTHO05D009823 3.2e-22 108.6 51 96.1
Lj1g0013448 Lotus japonicus HOM05D007952 ORTHO05D009823 1.0e-20 103.6 83 65.1
Nitab4.5_0007400g0010 Nicotiana tabacum HOM05D007952 ORTHO05D009823 8.7e-20 100.5 72 70.8
Psat0ss8367g0160 Pisum sativum HOM05D001387 ORTHO05D001250 2.8e-18 95.5 52 82.7
BolSC44t60812H Brassica oleracea HOM05D007952 ORTHO05D009823 6.3e-18 94.4 42 100.0
arahy.Tifrunner.gnm1.ann1.PHD7EH Arachis hypogaea HOM05D007952 ORTHO05D009823 1.1e-17 93.6 51 82.4
Sc21g0004590 Simmondsia chinensis HOM05D007952 ORTHO05D009823 1.8e-17 92.8 64 71.9
Potri.005G037850 Populus trichocarpa HOM05D007952 ORTHO05D009823 3.1e-17 92.0 57 78.9
CBR_g12953 Chara braunii HOM05D000019 ORTHO05D000048 3.4e-16 88.6 55 76.4
Medtr4g006040 Medicago truncatula HOM05D008037 ORTHO05D009823 7.7e-16 87.4 83 59.0
BcaC04g20704 Brassica carinata HOM05D007952 ORTHO05D009823 1.7e-15 86.3 38 100.0
Migut.A01208 Erythranthe guttata HOM05D008016 ORTHO05D004271 2.2e-15 85.9 40 100.0
Gohir.1Z049482 Gossypium hirsutum HOM05D008016 ORTHO05D004271 1.1e-14 83.6 44 88.6
Sed0000469 Sechium edule HOM05D010190 ORTHO05D009823 1.1e-14 83.6 44 90.9
Sed0006309 Sechium edule HOM05D010190 ORTHO05D009823 1.1e-14 83.6 44 90.9
Sed0014465 Sechium edule HOM05D010190 ORTHO05D004271 1.1e-14 83.6 44 90.9
arahy.Tifrunner.gnm1.ann1.B37VQ6 Arachis hypogaea HOM05D007952 ORTHO05D009823 1.9e-14 82.8 76 57.9
C04p22520 Brassica napus HOM05D008016 ORTHO05D004271 1.9e-14 82.8 43 90.7
BolSC29t60557H Brassica oleracea HOM05D008016 ORTHO05D010588 1.9e-14 82.8 43 90.7
BolSC35t60714H Brassica oleracea HOM05D008016 ORTHO05D004271 1.9e-14 82.8 43 90.7
BolSC44t60833H Brassica oleracea HOM05D008016 ORTHO05D004271 1.9e-14 82.8 43 90.7
BolSC45t60920H Brassica oleracea HOM05D008016 ORTHO05D010588 1.9e-14 82.8 43 90.7
BolSC46t60968H Brassica oleracea HOM05D008016 ORTHO05D010588 1.9e-14 82.8 43 90.7
BraSC103t45418Z Brassica rapa HOM05D008016 ORTHO05D010588 1.9e-14 82.8 43 90.7
BraSC103t45496Z Brassica rapa HOM05D008016 ORTHO05D004271 1.9e-14 82.8 43 90.7
BraSC25t45901Z Brassica rapa HOM05D008016 ORTHO05D010588 1.9e-14 82.8 43 90.7
BraSC25t45922Z Brassica rapa HOM05D008016 ORTHO05D010588 1.9e-14 82.8 43 90.7
BraSC59t46557Z Brassica rapa HOM05D008016 ORTHO05D004271 1.9e-14 82.8 43 90.7
Nitab4.5_0005831g0110 Nicotiana tabacum HOM05D008016 ORTHO05D011667 4.2e-14 81.6 95 50.5
Nitab4.5_0007400g0090 Nicotiana tabacum HOM05D008016 ORTHO05D004271 1.2e-13 80.1 89 51.7
Solyc06g043035.1 Solanum lycopersicum HOM05D008016 ORTHO05D004271 2.1e-13 79.3 43 88.4
SEGI_20804 Sequoiadendron giganteum HOM05D007952 ORTHO05D009823 4.6e-13 78.2 51 76.5
Nitab4.5_0007025g0020 Nicotiana tabacum HOM05D001226 ORTHO05D009823 1.0e-12 77.0 55 69.1
SEGI_02200 Sequoiadendron giganteum HOM05D007952 ORTHO05D009823 1.4e-12 76.6 51 74.5
BolSC91t61267H Brassica oleracea HOM05D007952 ORTHO05D009823 6.7e-12 74.3 52 78.8
Lalb_Chr15g0080721 Lupinus albus HOM05D008016 ORTHO05D004271 2.5e-11 72.4 40 87.5
Gohir.A09G103364 Gossypium hirsutum HOM05D008016 ORTHO05D004271 9.7e-11 70.5 36 88.9
Gohir.A13G086605 Gossypium hirsutum HOM05D008016 ORTHO05D004271 9.7e-11 70.5 36 88.9
Nitab4.5_0001170g0110 Nicotiana tabacum HOM05D008016 ORTHO05D004271 2.2e-10 69.3 44 75.0
Gohir.A09G101825 Gossypium hirsutum HOM05D008016 ORTHO05D004271 2.8e-10 68.9 36 86.1
RcHm_v2.0_Chr4g0392721 Rosa chinensis HOM05D008016 ORTHO05D004271 3.7e-10 68.6 44 77.3
Gohir.A07G174766 Gossypium hirsutum HOM05D008016 ORTHO05D004271 8.2e-10 67.4 36 86.1
Lalb_Chr03g0039361 Lupinus albus HOM05D008016 ORTHO05D004271 1.4e-09 66.6 36 88.9
ECA236G0169 Erigeron canadensis HOM05D000353 ORTHO05D000174 2.4e-09 65.9 62 59.7
Glyma.15G274900 Glycine max HOM05D008016 ORTHO05D004271 9.1e-09 63.9 36 83.3
SEGI_35056 Sequoiadendron giganteum HOM05D007952 ORTHO05D009823 9.1e-09 63.9 32 87.5
BraSC179t45783Z Brassica rapa HOM05D008016 ORTHO05D004271 2.6e-08 62.4 34 88.2
Gohir.1Z049580 Gossypium hirsutum HOM05D008016 ORTHO05D004271 2.6e-08 62.4 34 88.2
CAN.G262.4 Capsicum annuum HOM05D007952 ORTHO05D009823 4.5e-08 61.6 37 75.7
BolC6t36075H Brassica oleracea HOM05D000963 ORTHO05D009823 1.7e-07 59.7 29 86.2
Lj4g0016112 Lotus japonicus HOM05D007952 ORTHO05D009823 2.9e-07 58.9 25 100.0
Sed0021589 Sechium edule HOM05D008016 ORTHO05D004271 2.9e-07 58.9 33 87.9
RcHm_v2.0_Chr7g0221131 Rosa chinensis HOM05D008016 ORTHO05D004271 5.0e-07 58.2 36 80.6
CAN.G8.21 Capsicum annuum HOM05D000580 ORTHO05D001362 6.5e-07 57.8 80 41.2
Sopen11g014330 Solanum pennellii HOM05D000743 ORTHO05D000580 8.5e-07 57.4 34 79.4
Actinidia30703 Actinidia chinensis HOM05D001966 ORTHO05D009823 1.9e-06 56.2 65 52.3
BolSC35t60682H Brassica oleracea HOM05D008016 ORTHO05D010588 2.5e-06 55.8 65 56.9
DCAR_004958 Daucus carota HOM05D007952 ORTHO05D009823 2.5e-06 55.8 25 96.0
Peaxi162Scf00002g00723 Petunia axillaris HOM05D007952 ORTHO05D009823 2.5e-06 55.8 30 83.3
MD00G1140100 Malus domestica HOM05D008016 ORTHO05D004271 4.2e-06 55.1 35 77.1


User provided reference genes

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