Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Migut.D01375 Erythranthe guttata HOM05D000445 ORTHO05D000314 1.7e-57 225.7 110 100.0
BraSC143t45644Z Brassica rapa HOM05D000445 ORTHO05D000314 1.2e-21 106.7 72 80.6
Migut.D01405 Erythranthe guttata HOM05D000445 ORTHO05D000314 2.0e-21 105.9 131 50.4
Migut.D01323 Erythranthe guttata HOM05D000445 ORTHO05D000314 4.9e-20 101.3 171 39.8
PGSC0003DMG400015064 Solanum tuberosum HOM05D000445 ORTHO05D000314 2.4e-19 99.0 198 35.4
PGSC0003DMG400020533 Solanum tuberosum HOM05D000445 ORTHO05D000314 2.4e-19 99.0 198 35.4
PGSC0003DMG400046719 Solanum tuberosum HOM05D000445 ORTHO05D000314 2.4e-19 99.0 198 35.4
PGSC0003DMG402024143 Solanum tuberosum HOM05D000445 ORTHO05D000314 2.4e-19 99.0 198 35.4
HanXRQChr00c0634g0576591 Helianthus annuus HOM05D000445 ORTHO05D000314 3.2e-19 98.6 166 38.0
Solyc00g500037.1 Solanum lycopersicum HOM05D000445 ORTHO05D000314 4.1e-19 98.2 198 34.8
Solyc00g500046.1 Solanum lycopersicum HOM05D000445 ORTHO05D000314 4.1e-19 98.2 198 34.8
Solyc00g500081.1 Solanum lycopersicum HOM05D000445 ORTHO05D000314 4.1e-19 98.2 198 34.8
Solyc00g500128.1 Solanum lycopersicum HOM05D000445 ORTHO05D000314 4.1e-19 98.2 198 34.8
Solyc00g500198.1 Solanum lycopersicum HOM05D000445 ORTHO05D000314 4.1e-19 98.2 198 34.8
Solyc00g500327.1 Solanum lycopersicum HOM05D000445 ORTHO05D000314 4.1e-19 98.2 198 34.8
Sopen10g008920 Solanum pennellii HOM05D000445 ORTHO05D000314 4.1e-19 98.2 198 34.8
CAN.G745.36 Capsicum annuum HOM05D000445 ORTHO05D000314 2.7e-18 95.5 202 34.2
CARHR282560 Cardamine hirsuta HOM05D000445 ORTHO05D000314 7.8e-18 94.0 199 35.2
Dinv09726 Davidia involucrata HOM05D000445 ORTHO05D000314 1.0e-17 93.6 199 35.7
BNapus_Darmor_BZH_scaffold_287p00320 Brassica napus HOM05D000445 ORTHO05D000314 1.7e-17 92.8 199 35.7
C06p21350 Brassica napus HOM05D000445 ORTHO05D000314 1.7e-17 92.8 199 35.7
BraSC25t45894Z Brassica rapa HOM05D000445 ORTHO05D000314 1.7e-17 92.8 199 35.7
CAN.G1875.2 Capsicum annuum HOM05D000445 ORTHO05D000314 1.7e-17 92.8 202 33.7
DCAR_032529 Daucus carota HOM05D000445 ORTHO05D000314 1.7e-17 92.8 200 33.5
DCAR_032547 Daucus carota HOM05D000445 ORTHO05D000314 1.7e-17 92.8 200 33.5
Ah.10g029020 Amaranthus hybridus HOM05D000445 ORTHO05D000314 2.3e-17 92.4 148 37.8
CAN.G547.16 Capsicum annuum HOM05D000445 ORTHO05D000314 3.0e-17 92.0 201 34.8
Hma1.2p1_0192F.1_g083680 Hydrangea macrophylla HOM05D000445 ORTHO05D000314 3.0e-17 92.0 109 48.6
Hma1.2p1_0192F.1_g083690 Hydrangea macrophylla HOM05D000445 ORTHO05D000314 3.0e-17 92.0 109 48.6
Hma1.2p1_1244F.1_g270040 Hydrangea macrophylla HOM05D000445 ORTHO05D000314 3.0e-17 92.0 109 48.6
Hma1.2p1_4210F.1_g338452 Hydrangea macrophylla HOM05D000445 ORTHO05D000314 3.0e-17 92.0 109 48.6
Peaxi162Scf00163g00089 Petunia axillaris HOM05D000445 ORTHO05D000314 3.0e-17 92.0 104 51.9
C09p24760 Brassica napus HOM05D000445 ORTHO05D000314 3.9e-17 91.7 105 52.4
BolSC47t61071H Brassica oleracea HOM05D000445 ORTHO05D000314 3.9e-17 91.7 105 52.4
Sopen02g009120 Solanum pennellii HOM05D000445 ORTHO05D000314 3.9e-17 91.7 132 43.2
LjContig00489g0008652 Lotus japonicus HOM05D000445 ORTHO05D000314 5.1e-17 91.3 107 48.6
Potri.013G143400 Populus trichocarpa HOM05D000445 ORTHO05D000314 5.1e-17 91.3 108 50.9
PGR111G0085 Punica granatum HOM05D000445 ORTHO05D000314 5.1e-17 91.3 106 51.9
PGR111G0100 Punica granatum HOM05D000445 ORTHO05D000314 5.1e-17 91.3 106 51.9
SabraPtG0004600 Salix brachista HOM05D000445 ORTHO05D000314 5.1e-17 91.3 108 50.9
SabraPtG0006900 Salix brachista HOM05D000445 ORTHO05D000314 5.1e-17 91.3 108 50.9
ATCG00860 Arabidopsis thaliana HOM05D000445 ORTHO05D000314 6.6e-17 90.9 199 34.7
ATCG01280 Arabidopsis thaliana HOM05D000445 ORTHO05D000314 6.6e-17 90.9 199 34.7
Nitab4.5_0001946g0030 Nicotiana tabacum HOM05D000445 ORTHO05D000314 1.5e-16 89.7 135 42.2
Gorai.002G166000 Gossypium raimondii HOM05D000445 ORTHO05D000314 1.9e-16 89.4 170 37.6
AL9U12050 Arabidopsis lyrata HOM05D000445 ORTHO05D000314 2.5e-16 89.0 135 41.5
Ah.10g028850 Amaranthus hybridus HOM05D000445 ORTHO05D000314 4.3e-16 88.2 175 33.7
Gohir.D02G117422 Gossypium hirsutum HOM05D000445 ORTHO05D000314 4.3e-16 88.2 135 41.5
Nitab4.5_0000223g0170 Nicotiana tabacum HOM05D000445 ORTHO05D000314 4.3e-16 88.2 110 48.2
HanXRQChr00c0533g0575541 Helianthus annuus HOM05D000445 ORTHO05D000314 7.3e-16 87.4 121 43.8
SalBow1G2507 Salvia bowleyana HOM05D000445 ORTHO05D000314 7.3e-16 87.4 135 41.5
Solyc00g500239.1 Solanum lycopersicum HOM05D000445 ORTHO05D000314 1.2e-15 86.7 135 41.5
Solyc00g500304.1 Solanum lycopersicum HOM05D000445 ORTHO05D000314 1.2e-15 86.7 135 41.5
Solyc11g063577.1 Solanum lycopersicum HOM05D000445 ORTHO05D000314 1.2e-15 86.7 135 41.5
Cfa015164 Carpinus fangiana HOM05D000445 ORTHO05D000314 1.6e-15 86.3 200 35.0
Gorai.009G345600 Gossypium raimondii HOM05D000445 ORTHO05D000314 1.6e-15 86.3 121 43.0
Solyc11g062050.1 Solanum lycopersicum HOM05D000445 ORTHO05D000314 2.1e-15 85.9 41 95.1
Gohir.D01G101865 Gossypium hirsutum HOM05D000445 ORTHO05D000314 2.8e-15 85.5 186 34.4
Gohir.D05G322050 Gossypium hirsutum HOM05D000445 ORTHO05D000314 2.8e-15 85.5 121 42.1
HanXRQChr00c0349g0573991 Helianthus annuus HOM05D000445 ORTHO05D000314 2.8e-15 85.5 200 31.5
HanXRQChr00c0451g0574821 Helianthus annuus HOM05D000445 ORTHO05D000314 2.8e-15 85.5 200 31.5
HanXRQChr01g0020161 Helianthus annuus HOM05D000445 ORTHO05D000314 2.8e-15 85.5 200 31.5
HanXRQChr05g0152341 Helianthus annuus HOM05D000445 ORTHO05D000314 2.8e-15 85.5 200 31.5
HanXRQChr05g0152501 Helianthus annuus HOM05D000445 ORTHO05D000314 2.8e-15 85.5 200 31.5
HanXRQChr10g0284471 Helianthus annuus HOM05D000445 ORTHO05D000314 2.8e-15 85.5 200 31.5
HanXRQChr11g0321171 Helianthus annuus HOM05D000445 ORTHO05D000314 2.8e-15 85.5 200 31.5
HanXRQChr11g0327091 Helianthus annuus HOM05D000445 ORTHO05D000314 2.8e-15 85.5 200 31.5
HanXRQChr11g0333801 Helianthus annuus HOM05D000445 ORTHO05D000314 2.8e-15 85.5 200 31.5
HanXRQChr12g0369911 Helianthus annuus HOM05D000445 ORTHO05D000314 2.8e-15 85.5 200 31.5
HanXRQChr13g0416591 Helianthus annuus HOM05D000445 ORTHO05D000314 2.8e-15 85.5 200 31.5
HanXRQChr15g0474951 Helianthus annuus HOM05D000445 ORTHO05D000314 2.8e-15 85.5 200 31.5
HanXRQChr17g0569651 Helianthus annuus HOM05D000445 ORTHO05D000314 2.8e-15 85.5 200 31.5
HanXRQCPg0580251 Helianthus annuus HOM05D000445 ORTHO05D000314 2.8e-15 85.5 200 31.5
HanXRQCPg0580471 Helianthus annuus HOM05D000445 ORTHO05D000314 2.8e-15 85.5 200 31.5
Nitab4.5_0011099g0040 Nicotiana tabacum HOM05D000445 ORTHO05D036881 2.8e-15 85.5 41 97.6
Sed0022464 Sechium edule HOM05D000445 ORTHO05D000314 2.8e-15 85.5 135 40.7
Sed0004640 Sechium edule HOM05D000445 ORTHO05D000314 4.7e-15 84.7 125 43.2
RcHm_v2.0_CPg0501801 Rosa chinensis HOM05D000445 ORTHO05D000314 6.2e-15 84.3 197 34.0
RcHm_v2.0_CPg0502611 Rosa chinensis HOM05D000445 ORTHO05D000314 6.2e-15 84.3 197 34.0
ECA074G0010 Erigeron canadensis HOM05D000445 ORTHO05D000314 8.1e-15 84.0 106 44.3
ECA169G0002 Erigeron canadensis HOM05D000445 ORTHO05D000314 8.1e-15 84.0 106 44.3
HanXRQChr00c0434g0574671 Helianthus annuus HOM05D000445 ORTHO05D000314 8.1e-15 84.0 134 40.3
Lalb_Chr01g0014981 Lupinus albus HOM05D000445 ORTHO05D000314 1.4e-14 83.2 135 40.0
Lalb_Chr12g0206621 Lupinus albus HOM05D000445 ORTHO05D000314 1.4e-14 83.2 135 40.0
HanXRQChr00c0572g0575981 Helianthus annuus HOM05D000445 ORTHO05D000314 1.8e-14 82.8 135 39.3
HanXRQChr10g0317961 Helianthus annuus HOM05D000445 ORTHO05D000314 1.8e-14 82.8 135 39.3
Nn031s41601 Nelumbo nucifera HOM05D000445 ORTHO05D000314 2.4e-14 82.4 41 92.7
Nn233s45563 Nelumbo nucifera HOM05D000445 ORTHO05D000314 2.4e-14 82.4 41 92.7
Nn269s46007 Nelumbo nucifera HOM05D000445 ORTHO05D000314 2.4e-14 82.4 41 92.7
Nitab4.5_0000223g0180 Nicotiana tabacum HOM05D000445 ORTHO05D000314 2.4e-14 82.4 41 95.1
PSO548G0004 Papaver somniferum HOM05D000445 ORTHO05D000314 2.4e-14 82.4 41 92.7
PSO548G0115 Papaver somniferum HOM05D000445 ORTHO05D000314 2.4e-14 82.4 41 92.7
arahy.Tifrunner.gnm1.ann1.SV0IPA Arachis hypogaea HOM05D000445 ORTHO05D000314 5.2e-14 81.3 41 92.7
arahy.Tifrunner.gnm1.ann1.U896IL Arachis hypogaea HOM05D000445 ORTHO05D000314 5.2e-14 81.3 41 92.7
arahy.Tifrunner.gnm1.ann1.Z1U5RE Arachis hypogaea HOM05D000445 ORTHO05D000314 5.2e-14 81.3 41 92.7
Lalb_Chr07g0191931 Lupinus albus HOM05D000445 ORTHO05D000314 5.2e-14 81.3 41 92.7
HanXRQChr00c0454g0574911 Helianthus annuus HOM05D000445 ORTHO05D000314 6.9e-14 80.9 41 90.2
Nitab4.5_0004920g0020 Nicotiana tabacum HOM05D000445 ORTHO05D000314 6.9e-14 80.9 41 90.2
Sed0006678 Sechium edule HOM05D000445 ORTHO05D000314 6.9e-14 80.9 135 39.3
unitig_91.g26489 Utricularia gibba HOM05D000445 ORTHO05D000314 6.9e-14 80.9 103 49.5
unitig_91.g26516 Utricularia gibba HOM05D000445 ORTHO05D000314 6.9e-14 80.9 103 49.5
unitig_91.g26530 Utricularia gibba HOM05D000445 ORTHO05D000314 6.9e-14 80.9 103 49.5
Nitab4.5_0004929g0020 Nicotiana tabacum HOM05D000445 ORTHO05D000314 9.0e-14 80.5 39 94.9
ATR0258G003 Amborella trichopoda HOM05D000445 ORTHO05D000314 1.2e-13 80.1 41 92.7
arahy.Tifrunner.gnm1.ann1.0T2FMW Arachis hypogaea HOM05D000445 ORTHO05D000314 1.5e-13 79.7 131 39.7
C06p23170 Brassica napus HOM05D000445 ORTHO05D000314 1.5e-13 79.7 98 50.0
Lsat_1_v5_gn_0_15580 Lactuca sativa HOM05D000445 ORTHO05D000314 1.5e-13 79.7 200 30.5
Lsat_1_v5_gn_3_104600 Lactuca sativa HOM05D000445 ORTHO05D000314 1.5e-13 79.7 200 30.5
Lsat_1_v5_gn_7_920 Lactuca sativa HOM05D000445 ORTHO05D000314 1.5e-13 79.7 200 30.5
Lsat_1_v5_gn_8_26500 Lactuca sativa HOM05D000445 ORTHO05D000314 1.5e-13 79.7 200 30.5
arahy.Tifrunner.gnm1.ann1.9T9XDL Arachis hypogaea HOM05D000445 ORTHO05D000314 2.0e-13 79.3 41 90.2
LjContig00318g0022366 Lotus japonicus HOM05D000445 ORTHO05D000314 2.0e-13 79.3 135 38.5
LjContig00318g0026726 Lotus japonicus HOM05D000445 ORTHO05D000314 2.0e-13 79.3 135 38.5
LjContig00319g0026737 Lotus japonicus HOM05D000445 ORTHO05D000314 2.0e-13 79.3 135 38.5
Ah.10g027230 Amaranthus hybridus HOM05D000445 ORTHO05D000314 3.4e-13 78.6 200 29.5
Ah.10g027290 Amaranthus hybridus HOM05D000445 ORTHO05D000314 3.4e-13 78.6 200 29.5
Ah.10g027420 Amaranthus hybridus HOM05D000445 ORTHO05D000314 3.4e-13 78.6 200 29.5
Ah.10g027670 Amaranthus hybridus HOM05D000445 ORTHO05D000314 3.4e-13 78.6 200 29.5
Ah.10g027730 Amaranthus hybridus HOM05D000445 ORTHO05D000314 3.4e-13 78.6 200 29.5
HanXRQChr00c0593g0576451 Helianthus annuus HOM05D000445 ORTHO05D000314 3.4e-13 78.6 62 69.4
Nitab4.5_0000779g0100 Nicotiana tabacum HOM05D000445 ORTHO05D000314 3.4e-13 78.6 47 80.9
BolSC45t60924H Brassica oleracea HOM05D000445 ORTHO05D000314 5.8e-13 77.8 138 38.4
Lsat_1_v5_gn_9_18681 Lactuca sativa HOM05D000445 ORTHO05D000314 9.9e-13 77.0 127 37.8
Peaxi162Scf00603g00013 Petunia axillaris HOM05D000445 ORTHO05D000314 9.9e-13 77.0 41 90.2
DCAR_031999 Daucus carota HOM05D000445 ORTHO05D000314 1.3e-12 76.6 99 44.4
BolSC29t60492H Brassica oleracea HOM05D000445 ORTHO05D000314 2.2e-12 75.9 96 49.0
AUR62032991 Chenopodium quinoa HOM05D000445 ORTHO05D000314 2.2e-12 75.9 106 40.6
Nitab4.5_0008348g0020 Nicotiana tabacum HOM05D000445 ORTHO05D000314 3.8e-12 75.1 135 37.8
AUR62030850 Chenopodium quinoa HOM05D000445 ORTHO05D000314 4.9e-12 74.7 200 29.0
HanXRQChr13g0413621 Helianthus annuus HOM05D000445 ORTHO05D000314 4.9e-12 74.7 145 36.6
BolSC49t61212H Brassica oleracea HOM05D000445 ORTHO05D000314 6.4e-12 74.3 34 100.0
CAN.G219.11 Capsicum annuum HOM05D000445 ORTHO05D010400 6.4e-12 74.3 34 100.0
Peaxi162Scf00058g00822 Petunia axillaris HOM05D000445 ORTHO05D000314 6.4e-12 74.3 34 100.0
Solyc08g029410.1 Solanum lycopersicum HOM05D000445 ORTHO05D000314 6.4e-12 74.3 92 48.9
Ah.08g222970 Amaranthus hybridus HOM05D000445 ORTHO05D000314 8.4e-12 73.9 106 43.4
Ah.10g028580 Amaranthus hybridus HOM05D000445 ORTHO05D000314 8.4e-12 73.9 135 35.6
Oeu048725.1 Olea europaea HOM05D000445 ORTHO05D000314 8.4e-12 73.9 41 85.4
RcHm_v2.0_Chr2g0102151 Rosa chinensis HOM05D000445 ORTHO05D000314 8.4e-12 73.9 132 36.4
AUR62041554 Chenopodium quinoa HOM05D000445 ORTHO05D000314 1.9e-11 72.8 41 80.5
Nitab4.5_0001761g0110 Nicotiana tabacum HOM05D000445 ORTHO05D000314 2.4e-11 72.4 33 100.0
TAR383G0379 Trochodendron aralioides HOM05D000445 ORTHO05D000314 3.2e-11 72.0 128 37.5
CAN.G343.2 Capsicum annuum HOM05D000445 ORTHO05D010400 5.4e-11 71.2 34 97.1
Nitab4.5_0020415g0010 Nicotiana tabacum HOM05D001133 ORTHO05D000941 9.3e-11 70.5 32 100.0
VMungo0942G0001 Vigna mungo HOM05D000445 ORTHO05D000314 1.2e-10 70.1 41 80.5
VMungo0976G0001 Vigna mungo HOM05D000445 ORTHO05D000314 1.2e-10 70.1 41 80.5
Solyc00g500147.1 Solanum lycopersicum HOM05D000445 ORTHO05D000314 1.6e-10 69.7 187 31.6
CAN.G267.20 Capsicum annuum HOM05D000445 ORTHO05D000314 2.1e-10 69.3 34 91.2
Potri.019G028400 Populus trichocarpa HOM05D000445 ORTHO05D000314 4.6e-10 68.2 179 33.0
arahy.Tifrunner.gnm1.ann1.5ZHC49 Arachis hypogaea HOM05D000445 ORTHO05D000314 7.8e-10 67.4 113 38.9
Glyma.16G065300 Glycine max HOM05D000445 ORTHO05D000314 1.0e-09 67.0 42 78.6
HanXRQChr00c0585g0576211 Helianthus annuus HOM05D000445 ORTHO05D000314 1.0e-09 67.0 186 28.5
Lalb_Chr06g0166291 Lupinus albus HOM05D000445 ORTHO05D000314 1.0e-09 67.0 34 91.2
Lalb_Chr13g0292661 Lupinus albus HOM05D000445 ORTHO05D000314 1.0e-09 67.0 34 91.2
Phvul.007G139100 Phaseolus vulgaris HOM05D000445 ORTHO05D000314 3.0e-09 65.5 41 75.6
CAN.G1045.6 Capsicum annuum HOM05D000445 ORTHO05D000314 5.1e-09 64.7 127 35.4
Lsat_1_v5_gn_4_147941 Lactuca sativa HOM05D000445 ORTHO05D000314 6.6e-09 64.3 99 38.4
Solyc04g039780.1 Solanum lycopersicum HOM05D000445 ORTHO05D000314 8.7e-09 63.9 34 88.2
RcHm_v2.0_Chr2g0118431 Rosa chinensis HOM05D000445 ORTHO05D000314 1.5e-08 63.2 53 58.5
EL10As12g24038 Beta vulgaris HOM05D000445 ORTHO05D000314 2.5e-08 62.4 41 70.7
EL10As15g24112 Beta vulgaris HOM05D000445 ORTHO05D000314 5.6e-08 61.2 41 68.3
EL10As18g24166 Beta vulgaris HOM05D000445 ORTHO05D000314 5.6e-08 61.2 41 68.3
CsaV3_UNG209000 Cucumis sativus L. HOM05D000445 ORTHO05D000314 5.6e-08 61.2 43 74.4
FAN08G2610 Fragaria x ananassa HOM05D000445 ORTHO05D000314 1.3e-07 60.1 98 38.8
PGSC0003DMG400020691 Solanum tuberosum HOM05D000445 ORTHO05D000314 2.8e-07 58.9 117 35.9
Solyc03g058250.1 Solanum lycopersicum HOM05D000445 ORTHO05D000314 3.6e-07 58.5 42 66.7
CAN.G129.17 Capsicum annuum HOM05D008299 ORTHO05D010400 4.8e-07 58.2 28 92.9
Nitab4.5_0001379g0030 Nicotiana tabacum HOM05D000445 ORTHO05D000314 6.2e-07 57.8 47 70.2
CAN.G939.8 Capsicum annuum HOM05D000445 ORTHO05D000314 1.4e-06 56.6 120 34.2
DCAR_031660 Daucus carota HOM05D000445 ORTHO05D000314 1.4e-06 56.6 119 34.5
Medtr0689s0010 Medicago truncatula HOM05D000445 ORTHO05D000314 1.8e-06 56.2 120 34.2
Nitab4.5_0004573g0050 Nicotiana tabacum HOM05D000445 ORTHO05D000314 1.8e-06 56.2 77 46.8
Oeu011265.1 Olea europaea HOM05D000445 ORTHO05D000314 1.8e-06 56.2 26 100.0
Nitab4.5_0010831g0050 Nicotiana tabacum HOM05D000445 ORTHO05D000314 2.4e-06 55.8 24 100.0
Oeu012770.1 Olea europaea HOM05D000445 ORTHO05D000314 2.4e-06 55.8 30 80.0
SalBow1G2382 Salvia bowleyana HOM05D000445 ORTHO05D000314 3.1e-06 55.5 120 34.2
Lj4g0020232 Lotus japonicus HOM05D000445 ORTHO05D000314 4.0e-06 55.1 99 38.4
Solyc11g021080.3 Solanum lycopersicum HOM05D008299 ORTHO05D010400 6.9e-06 54.3 26 92.3


User provided reference genes

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