Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Migut.D01264 Erythranthe guttata HOM05D004927 ORTHO05D005798 2.6e-78 295.4 163 100.0
MSTRG.4598 Avicennia marina HOM05D004927 ORTHO05D005798 1.0e-50 203.8 166 71.1
MSTRG.11279 Avicennia marina HOM05D004927 ORTHO05D005798 8.5e-45 184.1 172 65.1
Dinv11165 Davidia involucrata HOM05D004927 ORTHO05D005798 1.8e-42 176.4 168 61.9
Dinv23136 Davidia involucrata HOM05D004927 ORTHO05D005798 2.3e-42 176.0 169 62.1
SalBow1G5982 Salvia bowleyana HOM05D004927 ORTHO05D005798 7.5e-41 171.0 164 67.7
SGA_v2.0_scaffold215G42324 Striga asiatica HOM05D004927 ORTHO05D005798 4.8e-40 168.3 161 65.8
CSS0046411 Camellia sinensis var. sinensis HOM05D004927 ORTHO05D005798 8.3e-40 167.5 164 62.2
Actinidia25582 Actinidia chinensis HOM05D004927 ORTHO05D005798 2.7e-38 162.5 150 62.7
Oeu056013.1 Olea europaea HOM05D004927 ORTHO05D005798 2.7e-38 162.5 169 57.4
Actinidia08867 Actinidia chinensis HOM05D004927 ORTHO05D005798 3.8e-37 158.7 168 56.0
SalBow1G7483 Salvia bowleyana HOM05D004927 ORTHO05D005798 6.5e-37 157.9 199 55.8
Actinidia33102 Actinidia chinensis HOM05D004927 ORTHO05D005798 9.4e-36 154.1 168 57.1
vmacro19200 Vaccinium macrocarpon HOM05D004927 ORTHO05D005798 1.2e-35 153.7 154 57.8
Oeu018539.1 Olea europaea HOM05D004927 ORTHO05D005798 1.6e-35 153.3 156 62.2
Solyc03g111270.2 Solanum lycopersicum HOM05D004927 ORTHO05D005798 1.6e-35 153.3 160 53.1
Sopen03g030400 Solanum pennellii HOM05D004927 ORTHO05D005798 1.6e-35 153.3 160 53.1
Nitab4.5_0003005g0020 Nicotiana tabacum HOM05D004927 ORTHO05D005798 2.1e-35 152.9 151 57.0
Lsat_1_v5_gn_1_29040 Lactuca sativa HOM05D004927 ORTHO05D005798 4.7e-35 151.8 168 55.4
PGR083G0131 Punica granatum HOM05D004927 ORTHO05D005798 4.7e-35 151.8 159 57.2
SGA_v2.0_scaffold161G37795 Striga asiatica HOM05D004927 ORTHO05D005798 1.0e-34 150.6 205 50.2
TWI23G0043 Tripterygium wilfordii HOM05D004927 ORTHO05D005798 1.4e-34 150.2 160 58.8
GSVIVG01008533001 Vitis vinifera HOM05D004927 ORTHO05D005798 4.0e-34 148.7 164 56.1
CANSAT80G0771 Cannabis sativa HOM05D004927 ORTHO05D005798 5.2e-34 148.3 168 55.4
CiPaw.11G008400 Carya illinoinensis HOM05D004927 ORTHO05D005798 5.2e-34 148.3 167 52.7
MD06G1142800 Malus domestica HOM05D004927 ORTHO05D005798 5.2e-34 148.3 163 57.7
Cc04_g10030 Coffea canephora HOM05D004927 ORTHO05D005798 6.8e-34 147.9 168 56.0
Potri.012G096900 Populus trichocarpa HOM05D004927 ORTHO05D005798 1.2e-33 147.1 165 58.8
THA.LOC104798947 Tarenaya hassleriana HOM05D004927 ORTHO05D005798 4.4e-33 145.2 155 58.1
ECA247G2750 Erigeron canadensis HOM05D004927 ORTHO05D005798 9.8e-33 144.1 151 57.0
HanXRQChr09g0273101 Helianthus annuus HOM05D004927 ORTHO05D005798 2.2e-32 142.9 154 54.5
Prupe.5G152100 Prunus persica HOM05D004927 ORTHO05D005798 2.2e-32 142.9 161 56.5
TWI39G0602 Tripterygium wilfordii HOM05D004927 ORTHO05D005798 3.7e-32 142.1 155 56.1
AT5G63460 Arabidopsis thaliana HOM05D004927 ORTHO05D005798 4.8e-32 141.7 157 56.1
Gohir.A11G036100 Gossypium hirsutum HOM05D004927 ORTHO05D005798 4.8e-32 141.7 144 61.8
HanXRQChr07g0193231 Helianthus annuus HOM05D004927 ORTHO05D005798 6.3e-32 141.4 164 55.5
Gohir.D11G039650 Gossypium hirsutum HOM05D004927 ORTHO05D005798 8.3e-32 141.0 145 60.7
AL8G40520 Arabidopsis lyrata HOM05D004927 ORTHO05D005798 1.1e-31 140.6 157 56.7
Sp2g26540 Schrenkiella parvula HOM05D004927 ORTHO05D005798 1.4e-31 140.2 157 57.3
Potri.015G094600 Populus trichocarpa HOM05D004927 ORTHO05D005798 1.8e-31 139.8 170 53.5
Nn3g16487 Nelumbo nucifera HOM05D004927 ORTHO05D005798 2.4e-31 139.4 168 54.8
Rhsim08G0189300 Rhododendron simsii HOM05D004927 ORTHO05D005798 2.4e-31 139.4 184 48.9
Glyma.05G047500 Glycine max HOM05D004927 ORTHO05D005798 4.1e-31 138.7 150 57.3
unitig_61.g26197 Utricularia gibba HOM05D004927 ORTHO05D005798 4.1e-31 138.7 175 52.6
Duzib068G0304 Durio zibethinus HOM05D004927 ORTHO05D005798 5.4e-31 138.3 148 58.8
Thecc.03G128000 Theobroma cacao HOM05D004927 ORTHO05D005798 5.4e-31 138.3 150 58.0
Carub.0008s2416 Capsella rubella HOM05D004927 ORTHO05D005798 7.0e-31 137.9 157 57.3
Thhalv10005047m.g Eutrema salsugineum HOM05D004927 ORTHO05D005798 7.0e-31 137.9 157 56.1
CsaV3_1G000620 Cucumis sativus L. HOM05D004927 ORTHO05D005798 9.1e-31 137.5 159 56.0
CiPaw.12G042500 Carya illinoinensis HOM05D004927 ORTHO05D005798 1.2e-30 137.1 166 53.6
Glyma.17G129300 Glycine max HOM05D004927 ORTHO05D005798 1.2e-30 137.1 147 58.5
MELO3C026211.2 Cucumis melo HOM05D004927 ORTHO05D005798 1.6e-30 136.7 159 56.0
MBI07_g34620_MAGBIO Magnolia biondii HOM05D004927 ORTHO05D005798 1.6e-30 136.7 149 56.4
Sed0011812 Sechium edule HOM05D004927 ORTHO05D005798 2.7e-30 136.0 156 56.4
CARHR277310 Cardamine hirsuta HOM05D004927 ORTHO05D005798 3.5e-30 135.6 155 54.8
Dinv04882 Davidia involucrata HOM05D004927 ORTHO05D005798 3.5e-30 135.6 124 61.3
Duzib205G1407 Durio zibethinus HOM05D004927 ORTHO05D005798 3.5e-30 135.6 147 59.2
BcaC04g23330 Brassica carinata HOM05D004927 ORTHO05D005798 4.5e-30 135.2 157 54.8
THA.LOC104818187 Tarenaya hassleriana HOM05D004927 ORTHO05D005798 4.5e-30 135.2 145 58.6
Manes.14G051700 Manihot esculenta HOM05D004927 ORTHO05D005798 7.7e-30 134.4 166 51.8
MD14G1158000 Malus domestica HOM05D004927 ORTHO05D005798 1.3e-29 133.7 163 51.5
Phvul.003G210400 Phaseolus vulgaris HOM05D004927 ORTHO05D005798 2.3e-29 132.9 155 53.5
Aa31LG1G18580 Aethionema arabicum HOM05D004927 ORTHO05D005798 2.9e-29 132.5 154 54.5
Gorai.007G042600 Gossypium raimondii HOM05D004927 ORTHO05D005798 2.9e-29 132.5 149 57.7
Ciclev10022591m.g Citrus clementina HOM05D004927 ORTHO05D005798 1.5e-28 130.2 161 54.0
Manes.06G118800 Manihot esculenta HOM05D004927 ORTHO05D005798 1.5e-28 130.2 140 57.9
DCAR_026226 Daucus carota HOM05D004927 ORTHO05D005798 9.5e-28 127.5 151 53.6
A09p08260 Brassica napus HOM05D004927 ORTHO05D005798 2.8e-27 125.9 149 54.4
Atru.chr9.1061 Acer truncatum HOM05D004927 ORTHO05D005798 3.6e-27 125.6 166 53.6
FvH4_5g08180 Fragaria vesca HOM05D004927 ORTHO05D005798 1.8e-26 123.2 158 53.8
Lsat_1_v5_gn_4_80380 Lactuca sativa HOM05D004927 ORTHO05D005798 2.3e-26 122.9 156 48.7
Sabra12G0070900 Salix brachista HOM05D004927 ORTHO05D005798 2.3e-26 122.9 167 52.7
Lalb_Chr12g0202181 Lupinus albus HOM05D004927 ORTHO05D005798 3.0e-26 122.5 151 53.0
RcHm_v2.0_Chr7g0190331 Rosa chinensis HOM05D004927 ORTHO05D005798 3.0e-26 122.5 161 53.4
BcaB04g19918 Brassica carinata HOM05D004927 ORTHO05D005798 4.0e-26 122.1 150 52.0
Sc04g0000700 Simmondsia chinensis HOM05D004927 ORTHO05D005798 4.0e-26 122.1 166 48.2
HPP92_001413 Vanilla planifolia HOM05D004927 ORTHO05D005798 4.0e-26 122.1 152 52.0
C09p09350 Brassica napus HOM05D000789 ORTHO05D005798 5.2e-26 121.7 149 53.0
BolC9t53847H Brassica oleracea HOM05D000789 ORTHO05D005798 5.2e-26 121.7 149 53.0
Lj4g0014142 Lotus japonicus HOM05D004927 ORTHO05D005798 6.8e-26 121.3 152 51.3
TAR622G0157 Trochodendron aralioides HOM05D004927 ORTHO05D005798 6.8e-26 121.3 153 52.9
CDE02G1054 Ceratophyllum demersum HOM05D004927 ORTHO05D005798 1.2e-25 120.6 141 51.1
Haze_07225 Corylus avellana HOM05D004927 ORTHO05D005798 1.5e-25 120.2 115 59.1
VMungo1215G0874 Vigna mungo HOM05D004927 ORTHO05D005798 2.0e-25 119.8 139 55.4
Lalb_Chr13g0297281 Lupinus albus HOM05D004927 ORTHO05D005798 4.4e-25 118.6 147 51.7
arahy.Tifrunner.gnm1.ann1.9DG48R Arachis hypogaea HOM05D004927 ORTHO05D005798 3.7e-24 115.5 134 55.2
arahy.Tifrunner.gnm1.ann1.PKYK26 Arachis hypogaea HOM05D004927 ORTHO05D005798 3.7e-24 115.5 134 55.2
BraA09t36477Z Brassica rapa HOM05D004927 ORTHO05D005798 3.7e-24 115.5 162 50.0
Gorai.006G271700 Gossypium raimondii HOM05D004927 ORTHO05D005798 3.2e-23 112.5 148 51.4
FAN18G3853 Fragaria x ananassa HOM05D004927 ORTHO05D005798 4.1e-23 112.1 150 53.3
Nitab4.5_0016919g0010 Nicotiana tabacum HOM05D004927 ORTHO05D005798 4.1e-23 112.1 109 55.0
PSO063G5502 Papaver somniferum HOM05D004927 ORTHO05D005798 4.1e-23 112.1 161 46.6
Aqoxy3G01521 Aquilegia oxysepala HOM05D004927 ORTHO05D005798 5.4e-23 111.7 157 47.1
FAN13G0393 Fragaria x ananassa HOM05D004927 ORTHO05D005798 7.0e-23 111.3 150 53.3
FAN04G0012 Fragaria x ananassa HOM05D004927 ORTHO05D005798 1.2e-22 110.5 156 51.3
AagrBONN_evm.TU.Sc2ySwM_344.432 Anthoceros agrestis HOM05D004927 ORTHO05D005798 1.6e-22 110.2 147 47.6
Zm00001eb169640 Zea mays HOM05D004927 ORTHO05D005798 1.6e-22 110.2 160 48.8
Os11g0483600 Oryza sativa ssp. japonica HOM05D004927 ORTHO05D005798 2.0e-22 109.8 172 45.3
FAN08G3438 Fragaria x ananassa HOM05D004927 ORTHO05D005798 2.7e-22 109.4 150 52.7
Migut.I00501 Erythranthe guttata HOM05D004927 ORTHO05D005798 4.5e-22 108.6 114 57.9
Gohir.A09G247250 Gossypium hirsutum HOM05D004927 ORTHO05D005798 4.5e-22 108.6 140 53.6
Sabra15G0116000 Salix brachista HOM05D004927 ORTHO05D005798 5.9e-22 108.2 185 44.9
vmacro16676 Vaccinium macrocarpon HOM05D004927 ORTHO05D005798 1.0e-21 107.5 113 56.6
PGSC0003DMG400015243 Solanum tuberosum HOM05D004927 ORTHO05D005798 1.3e-21 107.1 164 43.3
Medtr4g103580 Medicago truncatula HOM05D004927 ORTHO05D005798 5.0e-21 105.1 153 49.7
QL10p003733 Quercus lobata HOM05D004927 ORTHO05D005798 5.0e-21 105.1 125 49.6
Gorai.004G275800 Gossypium raimondii HOM05D004927 ORTHO05D005798 1.9e-20 103.2 148 48.6
Os12g0442900 Oryza sativa ssp. japonica HOM05D004927 ORTHO05D005798 1.9e-20 103.2 161 45.3
PSO478G0696 Papaver somniferum HOM05D004927 ORTHO05D005798 2.5e-20 102.8 159 43.4
CDE05G1557 Ceratophyllum demersum HOM05D004927 ORTHO05D005798 2.1e-19 99.8 112 54.5
Psat0s2546g0040 Pisum sativum HOM05D004927 ORTHO05D005798 2.1e-19 99.8 146 47.3
Gohir.D08G258600 Gossypium hirsutum HOM05D004927 ORTHO05D005798 4.7e-19 98.6 135 49.6
PSO017G7268 Papaver somniferum HOM05D004927 ORTHO05D005798 6.1e-19 98.2 182 39.6
ClCG06G017840 Citrullus lanatus HOM05D004927 ORTHO05D005798 8.0e-19 97.8 101 60.4
Lj9A478G96 Lonicera japonica HOM05D004927 ORTHO05D005798 1.0e-18 97.4 143 44.1
PSO782G2667 Papaver somniferum HOM05D004927 ORTHO05D005798 2.3e-18 96.3 155 43.9
EL10As4g23391 Beta vulgaris HOM05D004927 ORTHO05D005798 6.8e-18 94.7 145 44.8
TPR.G19215 Trifolium pratense HOM05D004927 ORTHO05D005798 6.8e-18 94.7 151 41.7
Eucgr.B00112 Eucalyptus grandis HOM05D004927 ORTHO05D005798 1.7e-16 90.1 154 42.9
Pp3c8_10310 Physcomitrium patens HOM05D004927 ORTHO05D005798 4.9e-16 88.6 153 43.1
CBR_g36334 Chara braunii HOM05D004927 ORTHO05D005798 1.9e-15 86.7 169 41.4
ATR0561G036 Amborella trichopoda HOM05D004927 ORTHO05D005798 2.4e-15 86.3 68 66.2
CBR_g27958 Chara braunii HOM05D004927 ORTHO05D005798 2.4e-15 86.3 162 42.6
CAN.G352.25 Capsicum annuum HOM05D004927 ORTHO05D005798 4.1e-15 85.5 83 51.8
Lsat_1_v5_gn_5_95420 Lactuca sativa HOM05D004927 ORTHO05D005798 3.5e-14 82.4 101 47.5
Gohir.A09G246700 Gossypium hirsutum HOM05D004927 ORTHO05D005798 1.7e-13 80.1 86 55.8
BolC2t12346H Brassica oleracea HOM05D001512 ORTHO05D001574 1.5e-12 77.0 116 47.4
SMO334G0034 Selaginella moellendorffii HOM05D004927 ORTHO05D005798 1.9e-12 76.6 141 40.4
C02p62750 Brassica napus HOM05D001512 ORTHO05D001574 7.3e-12 74.7 116 46.6
HPP92_001420 Vanilla planifolia HOM05D004927 ORTHO05D005798 1.2e-11 73.9 84 51.2
Hma1.2p1_2767F.1_g328170 Hydrangea macrophylla HOM05D004927 ORTHO05D005798 1.6e-11 73.6 81 55.6
Mapoly0121s0035 Marchantia polymorpha HOM05D004927 ORTHO05D005798 5.2e-10 68.6 107 43.9
BcaC03g18207 Brassica carinata HOM05D004927 ORTHO05D005798 6.8e-10 68.2 148 39.9
COL.COLO4_28098 Corchorus olitorius HOM05D004927 ORTHO05D005798 3.4e-09 65.9 94 50.0
Oeu037712.1 Olea europaea HOM05D004927 ORTHO05D005798 2.2e-08 63.2 56 58.9
Cfa018832 Carpinus fangiana HOM05D004927 ORTHO05D005798 5.4e-07 58.5 84 46.4
ECA232G0032 Erigeron canadensis HOM05D004927 ORTHO05D005798 1.2e-06 57.4 95 43.2
Gohir.D09G248000 Gossypium hirsutum HOM05D004927 ORTHO05D005798 2.7e-06 56.2 75 48.0
Gohir.D01G081600 Gossypium hirsutum HOM05D004927 ORTHO05D005798 3.5e-06 55.8 58 56.9
Gorai.007G057300 Gossypium raimondii HOM05D004927 ORTHO05D005798 3.5e-06 55.8 58 56.9
Gohir.D07G062100 Gossypium hirsutum HOM05D004927 ORTHO05D005798 4.6e-06 55.5 58 56.9


User provided reference genes

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