Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Migut.D01101 Erythranthe guttata HOM05D007920 ORTHO05D009993 3.3e-56 221.5 113 100.0
MSTRG.9407 Avicennia marina HOM05D007920 ORTHO05D009993 6.8e-41 170.6 117 75.2
SalBow6G4591 Salvia bowleyana HOM05D007920 ORTHO05D009993 1.5e-40 169.5 117 76.1
SalBow6G6899 Salvia bowleyana HOM05D007920 ORTHO05D009993 2.0e-40 169.1 117 74.4
SGA_v2.0_scaffold117G32314 Striga asiatica HOM05D007920 ORTHO05D009993 7.7e-37 157.1 116 68.1
Sopen03g035960 Solanum pennellii HOM05D007920 ORTHO05D009993 1.3e-36 156.4 115 70.4
Lj5C79G1 Lonicera japonica HOM05D007920 ORTHO05D009993 2.1e-34 149.1 115 67.8
PGSC0003DMG400014190 Solanum tuberosum HOM05D007920 ORTHO05D009993 2.8e-34 148.7 115 66.1
Nitab4.5_0012943g0020 Nicotiana tabacum HOM05D007920 ORTHO05D009993 1.0e-33 146.7 115 66.1
Oeu060125.1 Olea europaea HOM05D007920 ORTHO05D009993 5.2e-33 144.4 117 65.0
Hma1.2p1_0109F.1_g052370 Hydrangea macrophylla HOM05D007920 ORTHO05D009993 2.6e-32 142.1 116 67.2
MD17G1221700 Malus domestica HOM05D007920 ORTHO05D009993 2.8e-31 138.7 113 58.4
Nitab4.5_0001454g0110 Nicotiana tabacum HOM05D001080 ORTHO05D009993 2.8e-31 138.7 112 62.5
Actinidia36878 Actinidia chinensis HOM05D007920 ORTHO05D009993 3.7e-31 138.3 114 63.2
Lsat_1_v5_gn_4_87000 Lactuca sativa HOM05D007920 ORTHO05D009993 6.3e-31 137.5 116 63.8
Rhsim12G0188100 Rhododendron simsii HOM05D007920 ORTHO05D009993 6.3e-31 137.5 115 63.5
Prupe.3G096700 Prunus persica HOM05D007920 ORTHO05D009993 7.8e-29 130.6 113 55.8
Cpa.g.sc10.92 Carica papaya HOM05D007920 ORTHO05D009993 2.3e-28 129.0 109 61.5
HanXRQChr09g0274501 Helianthus annuus HOM05D007920 ORTHO05D009993 2.3e-28 129.0 94 69.1
Nn8g39812 Nelumbo nucifera HOM05D007920 ORTHO05D009993 2.3e-28 129.0 99 62.6
Cc04_g04970 Coffea canephora HOM05D007920 ORTHO05D009993 2.9e-28 128.6 118 58.5
CSS0007854 Camellia sinensis var. sinensis HOM05D007920 ORTHO05D009993 1.1e-27 126.7 104 66.3
QL05p035351 Quercus lobata HOM05D007920 ORTHO05D009993 1.1e-27 126.7 111 60.4
HanXRQChr05g0154421 Helianthus annuus HOM05D007920 ORTHO05D009993 7.3e-27 124.0 94 68.1
RcHm_v2.0_Chr2g0133221 Rosa chinensis HOM05D007920 ORTHO05D009993 1.6e-26 122.9 113 52.2
Sp1g14205 Schrenkiella parvula HOM05D007920 ORTHO05D009993 3.6e-26 121.7 105 60.0
TAR383G1062 Trochodendron aralioides HOM05D007920 ORTHO05D009993 3.6e-26 121.7 90 65.6
FAN09G3519 Fragaria x ananassa HOM05D007920 ORTHO05D009993 4.7e-26 121.3 113 52.2
THA.LOC104808181 Tarenaya hassleriana HOM05D007920 ORTHO05D009993 4.7e-26 121.3 105 58.1
Aqoxy7G03460 Aquilegia oxysepala HOM05D007920 ORTHO05D009993 8.0e-26 120.6 91 65.9
FAN05G5030 Fragaria x ananassa HOM05D007920 ORTHO05D009993 1.0e-25 120.2 113 51.3
BraA06t24364Z Brassica rapa HOM05D000537 ORTHO05D000415 1.8e-25 119.4 97 59.8
FvH4_6g28800 Fragaria vesca HOM05D007920 ORTHO05D009993 1.8e-25 119.4 113 52.2
MELO3C017832.2 Cucumis melo HOM05D007920 ORTHO05D009993 3.0e-25 118.6 101 62.4
FAN02G0847 Fragaria x ananassa HOM05D007920 ORTHO05D009993 4.0e-25 118.2 113 50.4
ATR0559G078 Amborella trichopoda HOM05D007920 ORTHO05D009993 5.2e-25 117.9 113 52.2
Gohir.D09G090800 Gossypium hirsutum HOM05D007920 ORTHO05D009993 5.2e-25 117.9 111 56.8
C05p14120 Brassica napus HOM05D000537 ORTHO05D000415 1.2e-24 116.7 97 58.8
BolC5t30143H Brassica oleracea HOM05D000537 ORTHO05D000415 1.2e-24 116.7 97 58.8
unitig_736.g22804 Utricularia gibba HOM05D000537 ORTHO05D000776 1.5e-24 116.3 93 60.2
AL1G28072 Arabidopsis lyrata HOM05D007920 ORTHO05D009993 2.0e-24 115.9 90 63.3
Aa31LG7G480 Aethionema arabicum HOM05D007920 ORTHO05D009993 2.6e-24 115.5 105 57.1
A06p11940 Brassica napus HOM05D000537 ORTHO05D000415 2.6e-24 115.5 97 57.7
CsaV3_4G002040 Cucumis sativus L. HOM05D001994 ORTHO05D001954 2.6e-24 115.5 103 59.2
CARHR016410 Cardamine hirsuta HOM05D007920 ORTHO05D009993 3.4e-24 115.2 90 62.2
Thhalv10009838m.g Eutrema salsugineum HOM05D007920 ORTHO05D009993 3.4e-24 115.2 105 57.1
Potri.001G046900 Populus trichocarpa HOM05D007920 ORTHO05D009993 3.4e-24 115.2 108 57.4
ClCG00G003920 Citrullus lanatus HOM05D007920 ORTHO05D009993 4.4e-24 114.8 97 61.9
ClCG07G012110 Citrullus lanatus HOM05D007920 ORTHO05D009993 4.4e-24 114.8 97 61.9
Gorai.006G107000 Gossypium raimondii HOM05D007920 ORTHO05D009993 5.7e-24 114.4 111 56.8
CANSAT56G1317 Cannabis sativa HOM05D007920 ORTHO05D009993 7.5e-24 114.0 90 61.1
PGR031G3888 Punica granatum HOM05D007920 ORTHO05D009993 9.8e-24 113.6 93 63.4
AT1G15900 Arabidopsis thaliana HOM05D007920 ORTHO05D009993 2.9e-23 112.1 86 65.1
ECA232G4957 Erigeron canadensis HOM05D007920 ORTHO05D009993 3.7e-23 111.7 90 60.0
Duzib192G0651 Durio zibethinus HOM05D007920 ORTHO05D009993 4.9e-23 111.3 107 56.1
Sabra01G0032500 Salix brachista HOM05D001994 ORTHO05D001954 4.9e-23 111.3 109 56.0
Gohir.A09G090800 Gossypium hirsutum HOM05D007920 ORTHO05D009993 6.4e-23 110.9 113 52.2
Manes.11G065050 Manihot esculenta HOM05D007920 ORTHO05D009993 6.4e-23 110.9 105 57.1
SHI00232 Sapria himalayana HOM05D007920 ORTHO05D009993 6.4e-23 110.9 109 51.4
Thecc.06G039600 Theobroma cacao HOM05D007920 ORTHO05D009993 6.4e-23 110.9 89 61.8
CiPaw.01G253600 Carya illinoinensis HOM05D007920 ORTHO05D009993 8.3e-23 110.5 94 59.6
TWI12G0021 Tripterygium wilfordii HOM05D007920 ORTHO05D009993 8.3e-23 110.5 86 61.6
Carub.0001s1570 Capsella rubella HOM05D007920 ORTHO05D009993 1.8e-22 109.4 87 59.8
Cfa000225 Carpinus fangiana HOM05D007920 ORTHO05D009993 9.2e-22 107.1 82 63.4
Sed0007883 Sechium edule HOM05D001994 ORTHO05D001954 5.9e-21 104.4 100 57.0
Lalb_Chr24g0395321 Lupinus albus HOM05D007920 ORTHO05D009993 3.0e-20 102.1 101 54.5
Psat5g304800 Pisum sativum HOM05D007920 ORTHO05D009993 3.0e-20 102.1 105 52.4
Sc12g0008420 Simmondsia chinensis HOM05D007920 ORTHO05D009993 3.9e-20 101.7 109 49.5
FAN14G5942 Fragaria x ananassa HOM05D007920 ORTHO05D009993 8.6e-20 100.5 112 45.5
Ciclev10026801m.g Citrus clementina HOM05D007920 ORTHO05D009993 1.1e-19 100.1 105 52.4
Medtr2g104930 Medicago truncatula HOM05D007920 ORTHO05D009993 1.5e-19 99.8 97 51.5
HPP92_000037 Vanilla planifolia HOM05D001122 ORTHO05D001877 1.5e-19 99.8 90 54.4
Lalb_Chr14g0374051 Lupinus albus HOM05D007920 ORTHO05D009993 3.3e-19 98.6 100 54.0
arahy.Tifrunner.gnm1.ann1.D8WECR Arachis hypogaea HOM05D007920 ORTHO05D009993 7.3e-19 97.4 88 53.4
Ca_01022_v3 Cicer arietinum L. HOM05D007920 ORTHO05D009993 2.1e-18 95.9 86 54.7
Lj3g0004979 Lotus japonicus HOM05D007920 ORTHO05D009993 4.7e-18 94.7 88 53.4
VMungo1080G1626 Vigna mungo HOM05D007920 ORTHO05D009993 1.4e-17 93.2 117 46.2
SEGI_11378 Sequoiadendron giganteum HOM05D007920 ORTHO05D009993 4.0e-17 91.7 100 48.0
Phvul.005G182500 Phaseolus vulgaris HOM05D007920 ORTHO05D009993 5.2e-17 91.3 109 46.8
Glyma.15G004000 Glycine max HOM05D007920 ORTHO05D009993 1.2e-16 90.1 109 47.7
Zm00001eb278260 Zea mays HOM05D007920 ORTHO05D009993 2.0e-16 89.4 86 54.7
MD16G1196200 Malus domestica HOM05D007920 ORTHO05D009993 5.8e-16 87.8 83 50.6
Sc02g0006940 Simmondsia chinensis HOM05D007920 ORTHO05D009993 1.1e-14 83.6 88 48.9
Ah.01g006840 Amaranthus hybridus HOM05D007920 ORTHO05D009993 2.4e-14 82.4 90 45.6
Mapoly0046s0029 Marchantia polymorpha HOM05D007920 ORTHO05D009993 5.4e-14 81.3 88 51.1
COL.COLO4_26676 Corchorus olitorius HOM05D007920 ORTHO05D009993 3.5e-13 78.6 65 64.6
TPR.G36324 Trifolium pratense HOM05D007920 ORTHO05D009993 2.1e-10 69.3 77 48.1
Hma1.2p1_0586F.1_g183770 Hydrangea macrophylla HOM05D007920 ORTHO05D009993 1.2e-08 63.5 74 52.7
Lsat_1_v5_gn_2_132940 Lactuca sativa HOM05D007920 ORTHO05D009993 4.4e-08 61.6 89 44.9
Hma1.2p1_1595F.1_g292725 Hydrangea macrophylla HOM05D007920 ORTHO05D009993 4.1e-06 55.1 53 60.4


User provided reference genes

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