Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Migut.D01034 Erythranthe guttata HOM05D004642 ORTHO05D005466 1.2e-255 886.7 735 100.0
SGA_v2.0_scaffold4G01996 Striga asiatica HOM05D004642 ORTHO05D005466 2.1e-82 311.2 728 45.5
Nitab4.5_0005851g0030 Nicotiana tabacum HOM05D004642 ORTHO05D005466 8.5e-76 289.3 695 45.5
Nitab4.5_0000671g0060 Nicotiana tabacum HOM05D004642 ORTHO05D005466 1.2e-66 258.8 693 41.3
SalBow2G0306 Salvia bowleyana HOM05D004642 ORTHO05D005466 3.3e-64 250.8 726 40.5
vmacro18915 Vaccinium macrocarpon HOM05D004642 ORTHO05D005466 9.4e-59 232.6 688 34.3
Oeu033484.1 Olea europaea HOM05D004642 ORTHO05D005466 3.6e-58 230.7 498 49.4
Cc04_g03480 Coffea canephora HOM05D004642 ORTHO05D005466 2.3e-57 228.0 692 33.4
Rhsim08G0221000 Rhododendron simsii HOM05D004642 ORTHO05D005466 9.7e-56 222.6 696 42.0
Prupe.3G071700 Prunus persica HOM05D004642 ORTHO05D005466 2.8e-55 221.1 696 30.3
QL05p024308 Quercus lobata HOM05D004642 ORTHO05D005466 1.1e-54 219.2 670 40.7
Haze_16437 Corylus avellana HOM05D004642 ORTHO05D005466 6.5e-52 209.9 601 42.3
SalBow2G2616 Salvia bowleyana HOM05D004642 ORTHO05D005466 1.2e-50 205.7 748 45.5
unitig_578.g16688 Utricularia gibba HOM05D004642 ORTHO05D005466 1.2e-45 189.1 757 34.3
Lj3g0008789 Lotus japonicus HOM05D004642 ORTHO05D005466 2.0e-45 188.3 685 43.2
TAR626G0806 Trochodendron aralioides HOM05D004642 ORTHO05D005466 5.9e-45 186.8 650 39.4
PSO782G0786 Papaver somniferum HOM05D004642 ORTHO05D005466 1.3e-44 185.7 734 30.8
Lalb_Chr14g0373421 Lupinus albus HOM05D004642 ORTHO05D005466 2.3e-44 184.9 641 32.8
Potri.001G179600 Populus trichocarpa HOM05D004642 ORTHO05D005466 2.9e-44 184.5 691 30.5
unitig_744.g24335 Utricularia gibba HOM05D004642 ORTHO05D005466 2.9e-44 184.5 735 38.2
Thecc.06G086400 Theobroma cacao HOM05D004642 ORTHO05D005466 8.6e-44 183.0 583 42.7
Dinv30514 Davidia involucrata HOM05D004642 ORTHO05D005466 3.3e-43 181.0 582 47.3
Cfa002061 Carpinus fangiana HOM05D004642 ORTHO05D005466 1.6e-42 178.7 678 36.4
Sopen03g039110 Solanum pennellii HOM05D004642 ORTHO05D005466 2.1e-42 178.3 720 37.2
Hma1.2p1_0323F.1_g125210 Hydrangea macrophylla HOM05D004642 ORTHO05D005466 3.6e-42 177.6 747 45.0
AUR62016441 Chenopodium quinoa HOM05D004642 ORTHO05D005466 4.7e-42 177.2 653 34.9
Glyma.12G087100 Glycine max HOM05D004642 ORTHO05D005466 8.0e-42 176.4 739 35.3
PGSC0003DMG400002564 Solanum tuberosum HOM05D004642 ORTHO05D005466 1.4e-41 175.6 682 37.5
MSTRG.9454 Avicennia marina HOM05D004642 ORTHO05D005466 2.3e-41 174.9 516 54.1
Gohir.A05G129515 Gossypium hirsutum HOM05D004642 ORTHO05D005466 5.7e-40 170.2 540 36.3
Solyc03g120230.3 Solanum lycopersicum HOM05D004642 ORTHO05D005466 5.7e-40 170.2 720 37.2
Sed0016127 Sechium edule HOM05D004642 ORTHO05D005466 1.7e-39 168.7 579 38.2
Sabra01G0147200 Salix brachista HOM05D004642 ORTHO05D005466 2.2e-39 168.3 598 41.3
Gorai.009G133100 Gossypium raimondii HOM05D004642 ORTHO05D005466 1.2e-37 162.5 532 35.7
CiPaw.02G151400 Carya illinoinensis HOM05D004642 ORTHO05D005466 1.6e-37 162.2 572 42.7
MELO3C024228.2 Cucumis melo HOM05D004642 ORTHO05D005466 2.0e-37 161.8 437 34.8
vmacro16950 Vaccinium macrocarpon HOM05D004642 ORTHO05D005466 3.5e-37 161.0 249 43.0
Duzib235G0715 Durio zibethinus HOM05D004642 ORTHO05D005466 4.5e-37 160.6 583 39.6
Gohir.D05G129000 Gossypium hirsutum HOM05D004642 ORTHO05D005466 1.0e-36 159.5 532 36.3
ClCG09G002170 Citrullus lanatus HOM05D004642 ORTHO05D005466 1.3e-36 159.1 538 42.2
MD17G1195700 Malus domestica HOM05D004642 ORTHO05D005466 5.0e-36 157.1 670 26.3
AUR62011627 Chenopodium quinoa HOM05D004642 ORTHO05D005466 6.6e-36 156.8 653 35.7
Atru.chr1.3266 Acer truncatum HOM05D004642 ORTHO05D005466 1.9e-35 155.2 283 41.0
Lsat_1_v5_gn_4_103580 Lactuca sativa HOM05D004642 ORTHO05D005466 1.2e-34 152.5 751 32.6
Ah.01g021290 Amaranthus hybridus HOM05D004642 ORTHO05D005466 1.6e-34 152.1 695 37.0
CsaV3_7G033140 Cucumis sativus L. HOM05D004642 ORTHO05D005466 1.6e-34 152.1 700 40.3
Actinidia24760 Actinidia chinensis HOM05D004642 ORTHO05D005466 2.8e-34 151.4 538 34.2
Lalb_Chr04g0262651 Lupinus albus HOM05D004642 ORTHO05D005466 3.6e-34 151.0 648 35.6
Gorai.006G098800 Gossypium raimondii HOM05D004642 ORTHO05D005466 1.0e-33 149.4 428 31.1
Actinidia08974 Actinidia chinensis HOM05D004642 ORTHO05D005466 1.4e-33 149.1 694 31.8
Aa31LG8G3170 Aethionema arabicum HOM05D004642 ORTHO05D005466 1.5e-32 145.6 364 41.5
Gohir.D09G083200 Gossypium hirsutum HOM05D004642 ORTHO05D005466 3.4e-32 144.4 417 30.9
TAR636G0382 Trochodendron aralioides HOM05D004642 ORTHO05D005466 2.2e-31 141.7 267 39.0
Ca_19383_v3 Cicer arietinum L. HOM05D004642 ORTHO05D005466 3.7e-31 141.0 646 43.8
Gohir.A09G083200 Gossypium hirsutum HOM05D004642 ORTHO05D005466 1.1e-30 139.4 417 29.0
Peaxi162Scf00015g00335 Petunia axillaris HOM05D004642 ORTHO05D005466 1.4e-30 139.0 692 37.7
PGR102G3321 Punica granatum HOM05D004642 ORTHO05D005466 2.4e-30 138.3 418 40.0
MD09G1213800 Malus domestica HOM05D004642 ORTHO05D005466 5.4e-30 137.1 695 34.7
Aqoxy7G01787 Aquilegia oxysepala HOM05D004642 ORTHO05D005466 9.2e-30 136.3 373 43.7
CSS0030593 Camellia sinensis var. sinensis HOM05D004642 ORTHO05D005466 9.2e-30 136.3 573 38.2
Medtr4g054960 Medicago truncatula HOM05D004642 ORTHO05D005466 2.7e-29 134.8 640 39.8
VMungo1127G1134 Vigna mungo HOM05D004642 ORTHO05D005466 6.0e-29 133.7 659 38.5
SGA_v2.0_scaffold37G14818 Striga asiatica HOM05D004642 ORTHO05D005466 1.3e-28 132.5 736 40.8
Thhalv10020153m.g Eutrema salsugineum HOM05D004642 ORTHO05D005466 2.3e-28 131.7 640 32.0
COL.COLO4_30362 Corchorus olitorius HOM05D004642 ORTHO05D005466 5.0e-28 130.6 457 44.4
EL10Ac9g21996 Beta vulgaris HOM05D004642 ORTHO05D005466 8.6e-28 129.8 203 43.8
TWI75G1656 Tripterygium wilfordii HOM05D004642 ORTHO05D005466 1.1e-27 129.4 255 37.3
Duzib192G0922 Durio zibethinus HOM05D004642 ORTHO05D005466 1.2e-26 125.9 442 39.8
Phvul.011G092000 Phaseolus vulgaris HOM05D004642 ORTHO05D005466 5.2e-25 120.6 658 38.3
Glyma.11G187500 Glycine max HOM05D004642 ORTHO05D005466 6.8e-25 120.2 683 28.8
arahy.Tifrunner.gnm1.ann1.D5EQ93 Arachis hypogaea HOM05D004642 ORTHO05D005466 1.5e-24 119.0 202 41.6
BcaB04g18872 Brassica carinata HOM05D004642 ORTHO05D005466 1.5e-24 119.0 669 42.0
ECA248G0988 Erigeron canadensis HOM05D004642 ORTHO05D005466 2.2e-23 115.2 239 38.5
CAN.G438.64 Capsicum annuum HOM05D004642 ORTHO05D005466 8.3e-23 113.2 530 40.8
CARHR091130 Cardamine hirsuta HOM05D004642 ORTHO05D005466 1.4e-22 112.5 692 31.4
Eucgr.F03012 Eucalyptus grandis HOM05D004642 ORTHO05D005466 1.4e-22 112.5 619 43.5
arahy.Tifrunner.gnm1.ann1.I53961 Arachis hypogaea HOM05D004642 ORTHO05D005466 1.9e-22 112.1 386 40.2
BcaB06g25698 Brassica carinata HOM05D004642 ORTHO05D005466 1.9e-22 112.1 196 38.3
Sed0016916 Sechium edule HOM05D004642 ORTHO05D005466 2.4e-22 111.7 646 32.5
HanXRQChr09g0275271 Helianthus annuus HOM05D004642 ORTHO05D005466 3.2e-22 111.3 217 39.6
Manes.11G047800 Manihot esculenta HOM05D004642 ORTHO05D005466 5.4e-22 110.5 735 37.6
CiPaw.01G239700 Carya illinoinensis HOM05D004642 ORTHO05D005466 9.2e-22 109.8 689 35.3
Ciclev10025273m.g Citrus clementina HOM05D004642 ORTHO05D005466 9.2e-22 109.8 573 36.3
Hma1.2p1_0323F.1_g125200 Hydrangea macrophylla HOM05D004642 ORTHO05D005466 1.2e-21 109.4 169 42.0
GSVIVG01017115001 Vitis vinifera HOM05D004642 ORTHO05D005466 1.2e-21 109.4 218 40.4
BcaB04g20887 Brassica carinata HOM05D004642 ORTHO05D005466 4.6e-21 107.5 670 29.7
Lj5A61G44 Lonicera japonica HOM05D004642 ORTHO05D005466 7.8e-21 106.7 677 31.3
TPR.G15588 Trifolium pratense HOM05D004642 ORTHO05D005466 7.8e-21 106.7 601 41.4
BcaC09g48580 Brassica carinata HOM05D004642 ORTHO05D005466 2.3e-20 105.1 688 24.0
THA.LOC104817998 Tarenaya hassleriana HOM05D004642 ORTHO05D005466 2.3e-20 105.1 239 38.9
A03p39630 Brassica napus HOM05D004642 ORTHO05D005466 3.0e-20 104.8 366 41.5
BraA03t13110Z Brassica rapa HOM05D004642 ORTHO05D005466 6.6e-20 103.6 424 39.2
PSO063G4770 Papaver somniferum HOM05D004642 ORTHO05D005466 8.6e-20 103.2 745 27.9
Sp3g14350 Schrenkiella parvula HOM05D004642 ORTHO05D005466 1.1e-19 102.8 225 36.4
BcaC01g03843 Brassica carinata HOM05D004642 ORTHO05D005466 4.3e-19 100.9 343 40.2
A05p33450 Brassica napus HOM05D004642 ORTHO05D005466 4.3e-19 100.9 200 37.0
C03p48030 Brassica napus HOM05D004642 ORTHO05D005466 4.3e-19 100.9 343 40.2
BolC3t17082H Brassica oleracea HOM05D004642 ORTHO05D005466 4.3e-19 100.9 343 40.2
MD09G1213500 Malus domestica HOM05D004642 ORTHO05D005466 4.3e-19 100.9 322 40.7
Zm00001eb283760 Zea mays HOM05D004642 ORTHO05D005466 4.3e-19 100.9 694 27.8
arahy.Tifrunner.gnm1.ann1.CA04QB Arachis hypogaea HOM05D004642 ORTHO05D005466 1.2e-18 99.4 647 38.0
arahy.Tifrunner.gnm1.ann1.Z6VQ0W Arachis hypogaea HOM05D004642 ORTHO05D005466 1.2e-18 99.4 647 38.0
Sc21g0005100 Simmondsia chinensis HOM05D004642 ORTHO05D005466 1.2e-18 99.4 654 43.3
Dinv38051 Davidia involucrata HOM05D004642 ORTHO05D005466 2.1e-18 98.6 274 32.5
BraA05t22169Z Brassica rapa HOM05D004642 ORTHO05D005466 3.6e-18 97.8 197 36.0
FAN09G1651 Fragaria x ananassa HOM05D004642 ORTHO05D005466 6.2e-18 97.1 246 33.7
Hund00614 Selenicereus undatus HOM05D004642 ORTHO05D005466 6.2e-18 97.1 625 32.3
FAN14G2337 Fragaria x ananassa HOM05D004642 ORTHO05D005466 8.1e-18 96.7 193 36.3
FvH4_6g31081 Fragaria vesca HOM05D004642 ORTHO05D005466 1.8e-17 95.5 235 34.0
AL3G28650 Arabidopsis lyrata HOM05D004642 ORTHO05D005466 8.9e-17 93.2 201 35.8
C01p48370 Brassica napus HOM05D004642 ORTHO05D005466 8.9e-17 93.2 169 39.1
BolC1t04795H Brassica oleracea HOM05D004642 ORTHO05D005466 8.9e-17 93.2 228 32.5
Nn2g11790 Nelumbo nucifera HOM05D004642 ORTHO05D005466 1.2e-16 92.8 704 26.1
CDE07G1358 Ceratophyllum demersum HOM05D004642 ORTHO05D005466 1.5e-16 92.4 190 34.7
C05p50450 Brassica napus HOM05D004642 ORTHO05D005466 2.6e-16 91.7 187 35.3
HPP92_020045 Vanilla planifolia HOM05D004642 ORTHO05D005466 2.6e-16 91.7 229 32.8
MD09G1212900 Malus domestica HOM05D004642 ORTHO05D005466 3.4e-16 91.3 149 43.0
RcHm_v2.0_Chr2g0137781 Rosa chinensis HOM05D004642 ORTHO05D005466 5.8e-16 90.5 184 41.8
CDE06G0246 Ceratophyllum demersum HOM05D004642 ORTHO05D005466 7.6e-16 90.1 194 33.0
Lalb_Chr01g0012651 Lupinus albus HOM05D004642 ORTHO05D005466 7.6e-16 90.1 629 34.0
BolC5t33791H Brassica oleracea HOM05D004642 ORTHO05D005466 9.9e-16 89.7 178 35.4
FAN05G5776 Fragaria x ananassa HOM05D004642 ORTHO05D005466 9.9e-16 89.7 225 33.3
AT3G16000 Arabidopsis thaliana HOM05D004642 ORTHO05D005466 1.3e-15 89.4 201 34.8
CANSAT56G1090 Cannabis sativa HOM05D004642 ORTHO05D005466 1.3e-15 89.4 158 39.2
Rhsim12G0197600 Rhododendron simsii HOM05D004642 ORTHO05D005466 3.7e-15 87.8 712 29.8
FAN02G1410 Fragaria x ananassa HOM05D004642 ORTHO05D005466 4.9e-15 87.4 241 33.2
Nn8g39228 Nelumbo nucifera HOM05D004642 ORTHO05D005466 6.4e-15 87.0 640 30.3
Psat7g189080 Pisum sativum HOM05D004642 ORTHO05D005466 1.4e-14 85.9 675 34.5
HPP92_019980 Vanilla planifolia HOM05D004642 ORTHO05D005466 1.4e-14 85.9 160 36.2
Carub.0003s1573 Capsella rubella HOM05D004642 ORTHO05D005466 4.1e-14 84.3 206 34.5
TAR624G0442 Trochodendron aralioides HOM05D004642 ORTHO05D005466 4.1e-14 84.3 92 54.3
ATR0037G055 Amborella trichopoda HOM05D004642 ORTHO05D005466 1.7e-12 79.0 630 39.0
Glyma.11G237600 Glycine max HOM05D004642 ORTHO05D005466 8.6e-12 76.6 104 44.2
HanXRQChr16g0500971 Helianthus annuus HOM05D004642 ORTHO05D005466 7.3e-11 73.6 698 31.4
Hund06610 Selenicereus undatus HOM05D004642 ORTHO05D005466 1.2e-10 72.8 709 22.6
MD09G1213300 Malus domestica HOM05D004642 ORTHO05D005466 1.6e-10 72.4 50 74.0
TAR624G1258 Trochodendron aralioides HOM05D004642 ORTHO05D005466 6.2e-10 70.5 51 72.5
CDE07G0399 Ceratophyllum demersum HOM05D004642 ORTHO05D005466 1.2e-08 66.2 155 31.0
AL776U10010 Arabidopsis lyrata HOM05D004642 ORTHO05D005466 1.5e-08 65.9 54 64.8
Zm00001eb122200 Zea mays HOM05D004642 ORTHO05D005466 7.6e-08 63.5 580 35.7
Os01g0180300 Oryza sativa ssp. japonica HOM05D004642 ORTHO05D005466 3.8e-07 61.2 120 35.0
Os05g0180400 Oryza sativa ssp. japonica HOM05D004642 ORTHO05D005466 1.9e-06 58.9 132 31.1
Oeu063962.1 Olea europaea HOM05D004642 ORTHO05D005466 3.2e-06 58.2 174 35.6


User provided reference genes

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