Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Migut.D00960 Erythranthe guttata HOM05D003238 ORTHO05D003571 2.6e-40 168.3 89 100.0
MSTRG.4775 Avicennia marina HOM05D003238 ORTHO05D003571 9.1e-17 90.1 76 65.8
Sed0010916 Sechium edule HOM05D003238 ORTHO05D003571 1.6e-16 89.4 75 61.3
Potri.004G095300 Populus trichocarpa HOM05D003238 ORTHO05D003571 1.0e-15 86.7 89 53.9
CiPaw.02G138700 Carya illinoinensis HOM05D003238 ORTHO05D003571 1.9e-14 82.4 61 63.9
TAR362G1092 Trochodendron aralioides HOM05D003238 ORTHO05D003571 1.9e-14 82.4 53 69.8
TAR624G0020 Trochodendron aralioides HOM05D003238 ORTHO05D003571 1.9e-14 82.4 51 72.5
Oeu004201.1 Olea europaea HOM05D003238 ORTHO05D003571 3.3e-14 81.6 65 60.0
TWI63G0468 Tripterygium wilfordii HOM05D003238 ORTHO05D003571 3.3e-14 81.6 78 51.3
Medtr2g039890 Medicago truncatula HOM05D003238 ORTHO05D003571 7.2e-14 80.5 90 50.0
arahy.Tifrunner.gnm1.ann1.57GLQM Arachis hypogaea HOM05D003238 ORTHO05D003571 2.1e-13 79.0 72 55.6
BraA10t43522Z Brassica rapa HOM05D003238 ORTHO05D003571 3.6e-13 78.2 69 55.1
Prupe.3G046400 Prunus persica HOM05D003238 ORTHO05D003571 4.7e-13 77.8 70 60.0
THA.LOC104813494 Tarenaya hassleriana HOM05D003238 ORTHO05D003571 4.7e-13 77.8 75 54.7
Ca_26161_v3 Cicer arietinum L. HOM05D003238 ORTHO05D003571 1.8e-12 75.9 89 44.9
Ciclev10009462m.g Citrus clementina HOM05D003238 ORTHO05D003571 1.8e-12 75.9 67 59.7
MD09G1190500 Malus domestica HOM05D003238 ORTHO05D003571 1.8e-12 75.9 61 62.3
CANSAT56G2721 Cannabis sativa HOM05D003238 ORTHO05D003571 2.3e-12 75.5 67 58.2
PGSC0003DMG400000275 Solanum tuberosum HOM05D003238 ORTHO05D003571 2.3e-12 75.5 88 50.0
SGA_v2.0_scaffold10G05235 Striga asiatica HOM05D002348 ORTHO05D002512 2.3e-12 75.5 90 48.9
Carub.0002s1954 Capsella rubella HOM05D003238 ORTHO05D003571 3.0e-12 75.1 76 51.3
Eucgr.C00871 Eucalyptus grandis HOM05D003238 ORTHO05D003571 5.2e-12 74.3 88 47.7
Thhalv10014757m.g Eutrema salsugineum HOM05D003238 ORTHO05D003571 5.2e-12 74.3 60 60.0
Phvul.009G231100 Phaseolus vulgaris HOM05D003238 ORTHO05D003571 5.2e-12 74.3 88 47.7
TAR375G0996 Trochodendron aralioides HOM05D003238 ORTHO05D003571 6.8e-12 73.9 51 64.7
SalBow7G1866 Salvia bowleyana HOM05D003238 ORTHO05D003571 8.9e-12 73.6 92 55.4
Solyc12g008950.2 Solanum lycopersicum HOM05D003238 ORTHO05D003571 1.5e-11 72.8 88 50.0
Sopen12g003880 Solanum pennellii HOM05D003238 ORTHO05D003571 1.5e-11 72.8 88 50.0
Thhalv10019375m.g Eutrema salsugineum HOM05D003238 ORTHO05D003571 2.0e-11 72.4 92 51.1
BcaB05g22307 Brassica carinata HOM05D003238 ORTHO05D003571 2.6e-11 72.0 79 45.6
HanXRQChr04g0126171 Helianthus annuus HOM05D003238 ORTHO05D003571 2.6e-11 72.0 80 50.0
RcHm_v2.0_Chr2g0144001 Rosa chinensis HOM05D003238 ORTHO05D003571 3.4e-11 71.6 50 66.0
A03p13050 Brassica napus HOM05D003238 ORTHO05D003571 4.4e-11 71.2 78 44.9
BraA03t10615Z Brassica rapa HOM05D003238 ORTHO05D003571 4.4e-11 71.2 78 44.9
GSVIVG01015179001 Vitis vinifera HOM05D003238 ORTHO05D003571 4.4e-11 71.2 57 56.1
Actinidia25242 Actinidia chinensis HOM05D003238 ORTHO05D003571 5.7e-11 70.9 74 47.3
BcaB08g36028 Brassica carinata HOM05D003238 ORTHO05D003571 5.7e-11 70.9 46 65.2
Lj4C292G2 Lonicera japonica HOM05D003238 ORTHO05D003571 5.7e-11 70.9 73 52.1
SalBow6G6091 Salvia bowleyana HOM05D003238 ORTHO05D003571 5.7e-11 70.9 62 56.5
MSTRG.6003 Avicennia marina HOM05D003238 ORTHO05D003571 7.5e-11 70.5 46 69.6
PGR142G0437 Punica granatum HOM05D003238 ORTHO05D003571 7.5e-11 70.5 60 56.7
QL05p009982 Quercus lobata HOM05D003238 ORTHO05D003571 7.5e-11 70.5 88 46.6
HPP92_006473 Vanilla planifolia HOM05D003238 ORTHO05D003571 7.5e-11 70.5 45 73.3
Glyma.15G170900 Glycine max HOM05D003238 ORTHO05D003571 9.8e-11 70.1 71 52.1
FAN14G3690 Fragaria x ananassa HOM05D003238 ORTHO05D003571 1.3e-10 69.7 52 67.3
COL.COLO4_18181 Corchorus olitorius HOM05D003238 ORTHO05D003571 2.2e-10 68.9 59 57.6
FvH4_6g33970 Fragaria vesca HOM05D003238 ORTHO05D003571 2.2e-10 68.9 48 68.8
FAN09G2388 Fragaria x ananassa HOM05D003238 ORTHO05D003571 2.2e-10 68.9 48 68.8
CiPaw.03G213000 Carya illinoinensis HOM05D003238 ORTHO05D003571 2.8e-10 68.6 58 53.4
Peaxi162Scf00498g00436 Petunia axillaris HOM05D003238 ORTHO05D003571 3.7e-10 68.2 79 49.4
FAN05G5076 Fragaria x ananassa HOM05D003238 ORTHO05D003571 4.9e-10 67.8 48 66.7
Lalb_Chr08g0232341 Lupinus albus HOM05D003238 ORTHO05D003571 4.9e-10 67.8 89 44.9
BcaC03g14186 Brassica carinata HOM05D003238 ORTHO05D003571 6.3e-10 67.4 82 43.9
Sp1g15630 Schrenkiella parvula HOM05D003238 ORTHO05D003571 6.3e-10 67.4 66 54.5
Lsat_1_v5_gn_1_35700 Lactuca sativa HOM05D003238 ORTHO05D003571 8.3e-10 67.0 76 48.7
Lj6g0026431 Lotus japonicus HOM05D003238 ORTHO05D003571 8.3e-10 67.0 82 47.6
Aa31LG7G2200 Aethionema arabicum HOM05D003238 ORTHO05D003571 1.1e-09 66.6 68 57.4
C09p48650 Brassica napus HOM05D003238 ORTHO05D003571 1.1e-09 66.6 62 53.2
DCAR_031341 Daucus carota HOM05D003238 ORTHO05D003571 1.1e-09 66.6 59 57.6
Psat1g140480 Pisum sativum HOM05D003238 ORTHO05D003571 1.1e-09 66.6 80 50.0
BcaC04g20028 Brassica carinata HOM05D003238 ORTHO05D003571 1.8e-09 65.9 64 51.6
BolC9t57711H Brassica oleracea HOM05D003238 ORTHO05D003571 1.8e-09 65.9 64 51.6
Lsat_1_v5_gn_8_86760 Lactuca sativa HOM05D003238 ORTHO05D003571 1.8e-09 65.9 53 62.3
Sp6g18700 Schrenkiella parvula HOM05D003238 ORTHO05D003571 1.8e-09 65.9 61 52.5
TWI32G0644 Tripterygium wilfordii HOM05D003238 ORTHO05D003571 1.8e-09 65.9 51 58.8
C02p14700 Brassica napus HOM05D003238 ORTHO05D003571 2.4e-09 65.5 82 42.7
BolC2t07595H Brassica oleracea HOM05D003238 ORTHO05D003571 2.4e-09 65.5 82 42.7
HanXRQChr02g0031751 Helianthus annuus HOM05D003238 ORTHO05D003571 2.4e-09 65.5 86 45.3
unitig_26.g9174 Utricularia gibba HOM05D003238 ORTHO05D003571 2.4e-09 65.5 88 47.7
arahy.Tifrunner.gnm1.ann1.ZSY109 Arachis hypogaea HOM05D003238 ORTHO05D003571 3.1e-09 65.1 72 50.0
A02p08810 Brassica napus HOM05D003238 ORTHO05D003571 3.1e-09 65.1 74 47.3
BraA02t05948Z Brassica rapa HOM05D003238 ORTHO05D003571 3.1e-09 65.1 74 47.3
RcHm_v2.0_Chr2g0093691 Rosa chinensis HOM05D003238 ORTHO05D003571 3.1e-09 65.1 74 47.3
Sabra04G0064600 Salix brachista HOM05D003238 ORTHO05D003571 3.1e-09 65.1 60 51.7
CARHR018090 Cardamine hirsuta HOM05D003238 ORTHO05D003571 4.1e-09 64.7 67 55.2
CARHR270740 Cardamine hirsuta HOM05D003238 ORTHO05D003571 4.1e-09 64.7 43 67.4
Migut.J00580 Erythranthe guttata HOM05D003238 ORTHO05D003571 4.1e-09 64.7 62 54.8
Os09g0363700 Oryza sativa ssp. japonica HOM05D003238 ORTHO05D003571 4.1e-09 64.7 78 47.4
RcHm_v2.0_Chr3g0459511 Rosa chinensis HOM05D003238 ORTHO05D003571 5.4e-09 64.3 50 64.0
ClCG05G000830 Citrullus lanatus HOM05D003238 ORTHO05D003571 7.0e-09 63.9 60 48.3
FAN26G0800 Fragaria x ananassa HOM05D003238 ORTHO05D003571 7.0e-09 63.9 87 48.3
FAN26G1453 Fragaria x ananassa HOM05D003238 ORTHO05D003571 7.0e-09 63.9 87 48.3
FAN28G2679 Fragaria x ananassa HOM05D003238 ORTHO05D003571 7.0e-09 63.9 87 48.3
FvH4_1g07820 Fragaria vesca HOM05D003238 ORTHO05D003571 9.2e-09 63.5 83 43.4
FAN19G2918 Fragaria x ananassa HOM05D003238 ORTHO05D003571 9.2e-09 63.5 83 43.4
Gohir.A10G058000 Gossypium hirsutum HOM05D003238 ORTHO05D003571 9.2e-09 63.5 88 42.0
Nitab4.5_0005918g0030 Nicotiana tabacum HOM05D003238 ORTHO05D003571 2.7e-08 62.0 89 43.8
HPP92_006471 Vanilla planifolia HOM05D003238 ORTHO05D003571 2.7e-08 62.0 36 80.6
DCAR_031339 Daucus carota HOM05D003238 ORTHO05D003571 3.5e-08 61.6 61 50.8
AL1G29780 Arabidopsis lyrata HOM05D003238 ORTHO05D003571 4.5e-08 61.2 75 48.0
BcaNung05566 Brassica carinata HOM05D003238 ORTHO05D003571 4.5e-08 61.2 66 54.5
C05p15920 Brassica napus HOM05D003238 ORTHO05D003571 4.5e-08 61.2 66 54.5
BolC5t30295H Brassica oleracea HOM05D003238 ORTHO05D003571 4.5e-08 61.2 66 54.5
FAN23G0786 Fragaria x ananassa HOM05D003238 ORTHO05D003571 4.5e-08 61.2 87 47.1
Gohir.D10G059800 Gossypium hirsutum HOM05D003238 ORTHO05D003571 4.5e-08 61.2 73 43.8
Gorai.011G063800 Gossypium raimondii HOM05D003238 ORTHO05D003571 4.5e-08 61.2 73 43.8
TAR624G1148 Trochodendron aralioides HOM05D003238 ORTHO05D003571 4.5e-08 61.2 73 41.1
Carub.0001s1726 Capsella rubella HOM05D003238 ORTHO05D003571 5.9e-08 60.8 63 54.0
MELO3C024380.2 Cucumis melo HOM05D003238 ORTHO05D003571 7.8e-08 60.5 86 40.7
Potri.017G119600 Populus trichocarpa HOM05D003238 ORTHO05D003571 7.8e-08 60.5 88 40.9
Sc14g0000680 Simmondsia chinensis HOM05D051806 ORTHO05D003571 7.8e-08 60.5 46 63.0
Cfa003064 Carpinus fangiana HOM05D003238 ORTHO05D003571 1.0e-07 60.1 61 54.1
Rhsim08G0235200 Rhododendron simsii HOM05D003238 ORTHO05D003571 1.0e-07 60.1 78 42.3
TPR.G13426 Trifolium pratense HOM05D003238 ORTHO05D003571 1.0e-07 60.1 67 47.8
AT1G17490 Arabidopsis thaliana HOM05D003238 ORTHO05D003571 1.3e-07 59.7 66 51.5
Duzib160G0096 Durio zibethinus HOM05D003238 ORTHO05D003571 1.7e-07 59.3 73 43.8
Zm00001eb310990 Zea mays HOM05D003238 ORTHO05D003571 1.7e-07 59.3 75 48.0
BcaB03g15008 Brassica carinata HOM05D003238 ORTHO05D003571 2.3e-07 58.9 43 60.5
BcaNung05568 Brassica carinata HOM05D003238 ORTHO05D003571 2.3e-07 58.9 66 53.0
A06p13430 Brassica napus HOM05D003238 ORTHO05D003571 2.3e-07 58.9 66 53.0
BraA06t24495Z Brassica rapa HOM05D003238 ORTHO05D003571 2.3e-07 58.9 66 53.0
CiPaw.01G223100 Carya illinoinensis HOM05D003238 ORTHO05D003571 2.3e-07 58.9 81 39.5
CsaV3_7G034700 Cucumis sativus L. HOM05D003238 ORTHO05D003571 2.3e-07 58.9 86 43.0
HanXRQChr06g0178591 Helianthus annuus HOM05D003238 ORTHO05D003571 2.3e-07 58.9 48 54.2
Nn6g35523 Nelumbo nucifera HOM05D003238 ORTHO05D003571 2.3e-07 58.9 50 56.0
MELO3C006025.2 Cucumis melo HOM05D003238 ORTHO05D003571 2.9e-07 58.5 53 52.8
ClCG09G000780 Citrullus lanatus HOM05D003238 ORTHO05D003571 3.9e-07 58.2 86 39.5
Haze_25933 Corylus avellana HOM05D003238 ORTHO05D003571 3.9e-07 58.2 88 39.8
Dinv37898 Davidia involucrata HOM05D003238 ORTHO05D003571 3.9e-07 58.2 79 45.6
Ca_23334_v3 Cicer arietinum L. HOM05D003238 ORTHO05D003571 5.0e-07 57.8 73 39.7
Haze_15983 Corylus avellana HOM05D003238 ORTHO05D003571 6.6e-07 57.4 81 38.3
ECA236G3496 Erigeron canadensis HOM05D003238 ORTHO05D003571 8.6e-07 57.0 85 43.5
A09p28910 Brassica napus HOM05D003238 ORTHO05D003571 1.1e-06 56.6 79 45.6
BraA09t38454Z Brassica rapa HOM05D003238 ORTHO05D003571 1.1e-06 56.6 79 45.6
COL.COLO4_30681 Corchorus olitorius HOM05D003238 ORTHO05D003571 1.1e-06 56.6 76 38.2
Prupe.7G206700 Prunus persica HOM05D003238 ORTHO05D003571 1.1e-06 56.6 86 40.7
CsaV3_3G008070 Cucumis sativus L. HOM05D003238 ORTHO05D003571 1.5e-06 56.2 53 52.8
VMungo0720G2789 Vigna mungo HOM05D003238 ORTHO05D003571 1.5e-06 56.2 52 51.9
Cc04_g01740 Coffea canephora HOM05D003238 ORTHO05D003571 1.9e-06 55.8 89 41.6
Phvul.010G137200 Phaseolus vulgaris HOM05D003238 ORTHO05D003571 1.9e-06 55.8 68 44.1
Thecc.06G114200 Theobroma cacao HOM05D003238 ORTHO05D003571 1.9e-06 55.8 76 38.2
AUR62009849 Chenopodium quinoa HOM05D003238 ORTHO05D003571 2.5e-06 55.5 65 49.2
Nitab4.5_0000255g0290 Nicotiana tabacum HOM05D003238 ORTHO05D003571 2.5e-06 55.5 67 47.8
Nitab4.5_0006462g0010 Nicotiana tabacum HOM05D003238 ORTHO05D003571 2.5e-06 55.5 61 49.2
Psat4g187480 Pisum sativum HOM05D003238 ORTHO05D003571 2.5e-06 55.5 66 42.4
QL02p062228 Quercus lobata HOM05D003238 ORTHO05D003571 3.3e-06 55.1 62 46.8
Sed0015805 Sechium edule HOM05D003238 ORTHO05D003571 3.3e-06 55.1 73 41.1
Sopen06g022220 Solanum pennellii HOM05D003238 ORTHO05D003571 3.3e-06 55.1 89 41.6
Glyma.07G008200 Glycine max HOM05D003238 ORTHO05D003571 4.3e-06 54.7 73 39.7
MD15G1209800 Malus domestica HOM05D003238 ORTHO05D003571 4.3e-06 54.7 99 39.4
Atru.chr1.3787 Acer truncatum HOM05D003238 ORTHO05D003571 7.3e-06 53.9 88 37.5
Cfa003563 Carpinus fangiana HOM05D003238 ORTHO05D003571 7.3e-06 53.9 73 38.4
Glyma.08G191200 Glycine max HOM05D003238 ORTHO05D003571 7.3e-06 53.9 73 39.7
Hma1.2p1_0169F.1_g074900 Hydrangea macrophylla HOM05D003238 ORTHO05D003571 7.3e-06 53.9 80 40.0
THA.LOC109116473 Tarenaya hassleriana HOM05D003238 ORTHO05D003571 7.3e-06 53.9 77 42.9
BcaB01g04436 Brassica carinata HOM05D003238 ORTHO05D003571 9.5e-06 53.5 56 46.4
CSS0012761 Camellia sinensis var. sinensis HOM05D003238 ORTHO05D003571 9.5e-06 53.5 78 41.0
CSS0032672 Camellia sinensis var. sinensis HOM05D003238 ORTHO05D003571 9.5e-06 53.5 78 41.0
CANSAT56G1439 Cannabis sativa HOM05D003238 ORTHO05D003571 9.5e-06 53.5 88 38.6


User provided reference genes

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