Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Migut.D00948 Erythranthe guttata HOM05D004436 ORTHO05D005179 6.0e-247 857.1 436 100.0
MSTRG.22562 Avicennia marina HOM05D004436 ORTHO05D005179 6.2e-143 511.5 441 60.5
Oeu044709.1 Olea europaea HOM05D004436 ORTHO05D005179 5.7e-128 461.8 408 58.1
Oeu047041.1 Olea europaea HOM05D004436 ORTHO05D005179 9.7e-128 461.1 398 59.5
SGA_v2.0_scaffold68G22895 Striga asiatica HOM05D004436 ORTHO05D005179 7.4e-120 434.9 473 50.1
PGSC0003DMG400016304 Solanum tuberosum HOM05D004436 ORTHO05D005179 1.3e-116 424.1 445 51.2
Nitab4.5_0000035g0090 Nicotiana tabacum HOM05D004436 ORTHO05D005179 1.4e-115 420.6 440 50.0
Peaxi162Scf00943g00014 Petunia axillaris HOM05D004436 ORTHO05D005179 1.9e-115 420.2 434 51.4
Sopen06g018390 Solanum pennellii HOM05D004436 ORTHO05D005179 1.9e-115 420.2 448 51.3
Solyc06g053330.4 Solanum lycopersicum HOM05D004436 ORTHO05D005179 3.2e-115 419.5 444 51.4
CAN.G540.4 Capsicum annuum HOM05D004436 ORTHO05D005179 3.1e-110 402.9 459 48.6
Nitab4.5_0012713g0010 Nicotiana tabacum HOM05D004436 ORTHO05D005179 4.1e-110 402.5 404 52.0
Peaxi162Scf00647g00219 Petunia axillaris HOM05D004436 ORTHO05D005179 5.3e-110 402.1 407 50.4
Dinv03512 Davidia involucrata HOM05D004436 ORTHO05D005179 9.1e-110 401.4 411 51.8
Lj5A40G74 Lonicera japonica HOM05D004436 ORTHO05D005179 1.2e-109 401.0 412 52.2
CiPaw.05G181900 Carya illinoinensis HOM05D004436 ORTHO05D005179 2.6e-104 383.3 409 49.6
CiPaw.01G221800 Carya illinoinensis HOM05D004436 ORTHO05D005179 1.1e-102 377.9 406 49.8
CSS0015890 Camellia sinensis var. sinensis HOM05D004436 ORTHO05D005179 4.1e-102 375.9 401 49.1
DCAR_026403 Daucus carota HOM05D004436 ORTHO05D005179 9.1e-102 374.8 411 48.9
Dinv30366 Davidia involucrata HOM05D004436 ORTHO05D005179 9.1e-102 374.8 363 53.7
Eucgr.F03167 Eucalyptus grandis HOM05D004436 ORTHO05D005179 2.0e-101 373.6 392 50.5
Actinidia32167 Actinidia chinensis HOM05D004436 ORTHO05D005179 1.3e-100 370.9 442 46.4
PGR119G1065 Punica granatum HOM05D004436 ORTHO05D005179 3.8e-100 369.4 408 47.8
Rhsim08G0236100 Rhododendron simsii HOM05D004436 ORTHO05D005179 5.0e-100 369.0 441 46.7
vmacro22224 Vaccinium macrocarpon HOM05D004436 ORTHO05D005179 9.4e-99 364.8 404 48.0
Hma1.2p1_0496F.1_g166100 Hydrangea macrophylla HOM05D004436 ORTHO05D005179 1.2e-98 364.4 419 50.1
TAR375G0086 Trochodendron aralioides HOM05D004436 ORTHO05D005179 1.6e-98 364.0 436 46.6
unitig_26.g9010 Utricularia gibba HOM05D000572 ORTHO05D002399 5.2e-97 359.0 439 46.5
GSVIVG01016817001 Vitis vinifera HOM05D004436 ORTHO05D005179 1.2e-96 357.8 404 49.8
CSS0033207 Camellia sinensis var. sinensis HOM05D004436 ORTHO05D005179 4.4e-96 355.9 401 47.6
Ciclev10025597m.g Citrus clementina HOM05D004436 ORTHO05D005179 7.5e-96 355.1 407 46.7
Cc04_g01610 Coffea canephora HOM05D004436 ORTHO05D005179 4.8e-95 352.4 318 53.8
Potri.001G198600 Populus trichocarpa HOM05D004436 ORTHO05D005179 4.8e-95 352.4 426 45.5
Haze_15997 Corylus avellana HOM05D004436 ORTHO05D005179 2.4e-94 350.1 438 45.4
Prupe.3G044800 Prunus persica HOM05D004436 ORTHO05D005179 2.4e-94 350.1 408 46.8
Cpa.g.sc25.86 Carica papaya HOM05D004436 ORTHO05D005179 9.1e-94 348.2 421 46.1
Sed0007780 Sechium edule HOM05D004436 ORTHO05D005179 1.6e-93 347.4 439 46.0
ClCG09G000840 Citrullus lanatus HOM05D004436 ORTHO05D005179 3.5e-93 346.3 408 46.6
CsaV3_7G034640 Cucumis sativus L. HOM05D004436 ORTHO05D005179 1.0e-92 344.7 408 46.8
RcHm_v2.0_Chr2g0144531 Rosa chinensis HOM05D004436 ORTHO05D005179 1.0e-92 344.7 410 46.8
Lj6g0016044 Lotus japonicus HOM05D004436 ORTHO05D005179 3.8e-92 342.8 439 44.4
FAN05G5343 Fragaria x ananassa HOM05D004436 ORTHO05D005179 5.0e-92 342.4 412 45.9
Sc12g0010440 Simmondsia chinensis HOM05D004436 ORTHO05D005179 5.0e-92 342.4 409 46.7
FAN09G2135 Fragaria x ananassa HOM05D004436 ORTHO05D005179 8.5e-92 341.7 412 45.9
FvH4_6g34180 Fragaria vesca HOM05D004436 ORTHO05D005179 3.2e-91 339.7 412 45.9
TWI23G0436 Tripterygium wilfordii HOM05D004436 ORTHO05D005179 4.2e-91 339.3 438 45.9
Manes.11G023100 Manihot esculenta HOM05D004436 ORTHO05D005179 7.2e-91 338.6 429 45.7
Glyma.15G165300 Glycine max HOM05D004436 ORTHO05D005179 9.4e-91 338.2 400 47.5
Duzib205G0267 Durio zibethinus HOM05D004436 ORTHO05D005179 1.2e-90 337.8 447 43.6
FAN02G3564 Fragaria x ananassa HOM05D004436 ORTHO05D005179 1.2e-90 337.8 412 45.6
Thecc.03G227200 Theobroma cacao HOM05D004436 ORTHO05D005179 1.2e-90 337.8 456 42.8
MELO3C024372.2 Cucumis melo HOM05D004436 ORTHO05D005179 2.7e-90 336.7 408 47.3
Manes.04G142200 Manihot esculenta HOM05D004436 ORTHO05D005179 2.7e-90 336.7 462 43.9
HanXRQChr10g0312341 Helianthus annuus HOM05D004436 ORTHO05D005179 3.6e-90 336.3 405 47.4
Sabra01G0155800 Salix brachista HOM05D004436 ORTHO05D005179 1.4e-89 334.3 437 43.5
Lsat_1_v5_gn_5_135221 Lactuca sativa HOM05D004436 ORTHO05D005179 3.0e-89 333.2 433 43.9
FAN26G0630 Fragaria x ananassa HOM05D004436 ORTHO05D005179 4.0e-89 332.8 436 44.5
Atru.chr1.3808 Acer truncatum HOM05D004436 ORTHO05D005179 6.8e-89 332.0 383 45.2
ECA234G4408 Erigeron canadensis HOM05D004436 ORTHO05D005179 6.8e-89 332.0 400 47.0
Lalb_Chr08g0233321 Lupinus albus HOM05D004436 ORTHO05D005179 1.2e-88 331.3 437 43.7
COL.COLO4_30482 Corchorus olitorius HOM05D004436 ORTHO05D005179 5.7e-88 328.9 437 46.5
THA.LOC104804933 Tarenaya hassleriana HOM05D004436 ORTHO05D005179 1.7e-87 327.4 410 45.6
Hund20819 Selenicereus undatus HOM05D004436 ORTHO05D005179 3.7e-87 326.2 432 43.3
RcHm_v2.0_Chr2g0166351 Rosa chinensis HOM05D004436 ORTHO05D005179 1.1e-86 324.7 408 45.1
Thhalv10020760m.g Eutrema salsugineum HOM05D004436 ORTHO05D005179 5.4e-86 322.4 413 43.6
FAN14G2695 Fragaria x ananassa HOM05D004436 ORTHO05D005179 7.0e-86 322.0 448 42.2
MD09G1187900 Malus domestica HOM05D004436 ORTHO05D005179 7.0e-86 322.0 408 44.4
Sed0020704 Sechium edule HOM05D004436 ORTHO05D005179 1.6e-85 320.9 414 46.4
Sp3g12180 Schrenkiella parvula HOM05D004436 ORTHO05D005179 2.0e-85 320.5 432 42.6
Nitab4.5_0004287g0020 Nicotiana tabacum HOM05D004436 ORTHO05D005179 2.7e-85 320.1 401 45.1
Aa31LG8G1130 Aethionema arabicum HOM05D004436 ORTHO05D005179 4.5e-85 319.3 431 43.9
CANSAT56G1493 Cannabis sativa HOM05D004436 ORTHO05D005179 2.3e-84 317.0 403 44.2
Ca_02096_v3 Cicer arietinum L. HOM05D004436 ORTHO05D005179 8.6e-84 315.1 407 45.0
Gohir.A03G000500 Gossypium hirsutum HOM05D004436 ORTHO05D005179 1.5e-83 314.3 442 41.6
Gorai.003G182300 Gossypium raimondii HOM05D004436 ORTHO05D005179 1.5e-83 314.3 442 41.0
Peaxi162Scf00060g02815 Petunia axillaris HOM05D004436 ORTHO05D005179 1.5e-83 314.3 434 43.1
Gohir.D03G171700 Gossypium hirsutum HOM05D004436 ORTHO05D005179 1.9e-83 313.9 442 40.7
Rhsim10G0150900 Rhododendron simsii HOM05D004436 ORTHO05D005179 4.2e-83 312.8 506 39.5
FvH4_6g47280 Fragaria vesca HOM05D004436 ORTHO05D005179 2.8e-82 310.1 416 44.0
AL3G26120 Arabidopsis lyrata HOM05D004436 ORTHO05D005179 6.1e-82 308.9 434 40.8
Carub.0003s1351 Capsella rubella HOM05D004436 ORTHO05D005179 4.0e-81 306.2 431 40.1
Phvul.009G236700 Phaseolus vulgaris HOM05D004436 ORTHO05D005179 3.4e-80 303.1 405 44.7
Ah.07g197300 Amaranthus hybridus HOM05D004436 ORTHO05D005179 2.2e-79 300.4 434 42.2
CARHR088750 Cardamine hirsuta HOM05D004436 ORTHO05D005179 4.9e-79 299.3 433 40.4
AT3G13940 Arabidopsis thaliana HOM05D004436 ORTHO05D005179 8.3e-79 298.5 435 38.6
COL.COLO4_17027 Corchorus olitorius HOM05D004436 ORTHO05D005179 1.8e-78 297.4 355 47.9
AUR62009860 Chenopodium quinoa HOM05D004436 ORTHO05D005179 5.4e-78 295.8 435 39.5
Medtr7g104810 Medicago truncatula HOM05D004436 ORTHO05D005179 7.0e-78 295.4 410 41.2
Medtr2g037880 Medicago truncatula HOM05D004436 ORTHO05D005179 1.2e-77 294.7 438 40.9
arahy.Tifrunner.gnm1.ann1.0TY6IG Arachis hypogaea HOM05D004436 ORTHO05D005179 2.0e-77 293.9 417 41.2
arahy.Tifrunner.gnm1.ann1.4RDH3B Arachis hypogaea HOM05D004436 ORTHO05D005179 1.0e-76 291.6 417 40.8
EL10Ac7g16380 Beta vulgaris HOM05D004436 ORTHO05D005179 5.0e-76 289.3 434 41.0
BcaC09g48383 Brassica carinata HOM05D004436 ORTHO05D005179 3.3e-75 286.6 410 41.2
C01p50660 Brassica napus HOM05D004436 ORTHO05D005179 3.3e-75 286.6 410 41.2
BolC1t05015H Brassica oleracea HOM05D004436 ORTHO05D005179 3.3e-75 286.6 410 41.2
Psat1g144000 Pisum sativum HOM05D004436 ORTHO05D005179 5.6e-75 285.8 440 39.5
CDE07G0038 Ceratophyllum demersum HOM05D004436 ORTHO05D005179 7.3e-75 285.4 437 40.0
TPR.G13789 Trifolium pratense HOM05D004436 ORTHO05D005179 7.3e-75 285.4 412 41.3
EL10Ac7g16378 Beta vulgaris HOM05D004436 ORTHO05D005179 1.2e-74 284.6 436 40.1
Aqoxy2G00706 Aquilegia oxysepala HOM05D004436 ORTHO05D005179 1.6e-74 284.3 416 40.9
A01p39710 Brassica napus HOM05D004436 ORTHO05D005179 2.1e-74 283.9 410 41.2
BraA01t04010Z Brassica rapa HOM05D004436 ORTHO05D005179 2.8e-74 283.5 406 41.4
AUR62001510 Chenopodium quinoa HOM05D004436 ORTHO05D005179 8.0e-74 282.0 433 38.6
PSO135G0558 Papaver somniferum HOM05D004436 ORTHO05D005179 4.0e-73 279.6 415 41.4
Medtr2g037460 Medicago truncatula HOM05D004436 ORTHO05D005179 3.4e-72 276.6 433 39.7
PSO724G1089 Papaver somniferum HOM05D004436 ORTHO05D005179 5.8e-72 275.8 415 41.2
QL05p009436 Quercus lobata HOM05D004436 ORTHO05D005179 5.8e-72 275.8 638 31.0
Actinidia21779 Actinidia chinensis HOM05D004436 ORTHO05D005179 7.5e-72 275.4 414 38.9
BcaB04g20967 Brassica carinata HOM05D004436 ORTHO05D005179 2.9e-71 273.5 412 42.0
ATR0762G049 Amborella trichopoda HOM05D004436 ORTHO05D005179 1.6e-61 241.1 462 37.9
MD17G1172300 Malus domestica HOM05D004436 ORTHO05D005179 1.0e-60 238.4 325 41.8
FAN24G2018 Fragaria x ananassa HOM05D004436 ORTHO05D005179 2.3e-60 237.3 398 38.2
Nn6g35749 Nelumbo nucifera HOM05D004436 ORTHO05D005179 7.3e-59 232.3 410 37.6
HPP92_009424 Vanilla planifolia HOM05D004436 ORTHO05D005179 1.4e-57 228.0 418 37.8
Zm00001eb166800 Zea mays HOM05D004436 ORTHO05D005179 6.6e-52 209.1 405 35.8
FvH4_2g14600 Fragaria vesca HOM05D004436 ORTHO05D005179 7.3e-51 205.7 305 40.7
Lj6g0018808 Lotus japonicus HOM05D004436 ORTHO05D005179 3.6e-50 203.4 250 44.0
Carub.0003s3547 Capsella rubella HOM05D004436 ORTHO05D005179 2.0e-48 197.6 373 35.7
Os11g0615100 Oryza sativa ssp. japonica HOM05D004436 ORTHO05D005179 4.4e-48 196.4 405 35.3
TPR.G16505 Trifolium pratense HOM05D004436 ORTHO05D005179 1.3e-47 194.9 220 47.3
Ah.08g216510 Amaranthus hybridus HOM05D004436 ORTHO05D005179 2.4e-46 190.7 314 37.9
AagrBONN_evm.TU.Sc2ySwM_368.2707 Anthoceros agrestis HOM05D004436 ORTHO05D005179 1.7e-44 184.5 449 32.1
Ca_27339_v3 Cicer arietinum L. HOM05D004436 ORTHO05D005179 2.3e-44 184.1 297 38.4
DCAR_023423 Daucus carota HOM05D004436 ORTHO05D005179 2.5e-43 180.6 237 42.6
FAN14G5104 Fragaria x ananassa HOM05D002326 ORTHO05D005179 5.8e-40 169.5 231 41.1
Pp3c8_24340 Physcomitrium patens HOM05D004436 ORTHO05D005179 7.6e-40 169.1 453 31.6
Aqoxy7G00272 Aquilegia oxysepala HOM05D004436 ORTHO05D005179 1.2e-37 161.8 196 43.4
THA.LOC104822769 Tarenaya hassleriana HOM05D004436 ORTHO05D005179 7.9e-37 159.1 262 38.9
Oeu004353.1 Olea europaea HOM05D004436 ORTHO05D005179 1.4e-33 148.3 108 65.7
SEGI_22335 Sequoiadendron giganteum HOM05D004436 ORTHO05D005179 1.5e-32 144.8 266 39.1
FAN27G1625 Fragaria x ananassa HOM05D004436 ORTHO05D005179 5.8e-32 142.9 390 30.5
Aqoxy2G02914 Aquilegia oxysepala HOM05D004436 ORTHO05D005179 1.3e-28 131.7 137 51.1
SEGI_28110 Sequoiadendron giganteum HOM05D004436 ORTHO05D005179 2.5e-27 127.5 323 34.1
FAN20G3048 Fragaria x ananassa HOM05D004436 ORTHO05D005179 1.4e-25 121.7 238 36.1
PGSC0003DMG400002436 Solanum tuberosum HOM05D004436 ORTHO05D005179 1.2e-24 118.6 154 46.8
ATR0185G001 Amborella trichopoda HOM05D004436 ORTHO05D005179 4.9e-23 113.2 179 43.0
FAN09G3702 Fragaria x ananassa HOM05D002326 ORTHO05D005179 1.4e-22 111.7 408 27.7
CBR_g45967 Chara braunii HOM05D004436 ORTHO05D005179 2.5e-22 110.9 437 24.9
Dinv21190 Davidia involucrata HOM05D004436 ORTHO05D005179 5.5e-22 109.8 108 50.9
FAN15G1241 Fragaria x ananassa HOM05D004436 ORTHO05D005179 6.0e-21 106.3 118 47.5
FAN02G4131 Fragaria x ananassa HOM05D002326 ORTHO05D005179 7.9e-21 105.9 411 27.0
Mapoly0063s0055 Marchantia polymorpha HOM05D004436 ORTHO05D005179 1.8e-20 104.8 337 28.2
THA.LOC104822775 Tarenaya hassleriana HOM05D004436 ORTHO05D005179 1.8e-20 104.8 156 41.7
Haze_06394 Corylus avellana HOM05D004436 ORTHO05D005179 2.5e-19 100.9 233 36.5
AUR62000997 Chenopodium quinoa HOM05D004436 ORTHO05D005179 4.8e-18 96.7 170 35.9
AL1G64440 Arabidopsis lyrata HOM05D004436 ORTHO05D005179 1.7e-15 88.2 140 40.0
Aqoxy2G02915 Aquilegia oxysepala HOM05D004436 ORTHO05D005179 1.9e-14 84.7 136 37.5
SEGI_36774 Sequoiadendron giganteum HOM05D004436 ORTHO05D005179 1.2e-13 82.0 111 36.0
Oeu027301.1 Olea europaea HOM05D004436 ORTHO05D005179 5.1e-12 76.6 156 35.9
Peaxi162Scf01131g00007 Petunia axillaris HOM05D004436 ORTHO05D005179 1.1e-11 75.5 130 35.4
TPR.G16496 Trifolium pratense HOM05D004436 ORTHO05D005179 3.3e-11 73.9 179 27.9
SMO144G0124 Selaginella moellendorffii HOM05D004436 ORTHO05D005179 2.6e-08 64.3 97 36.1


User provided reference genes

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