Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Migut.D00918 Erythranthe guttata HOM05D002144 ORTHO05D002170 2.1e-60 235.7 138 100.0
SalBow7G2197 Salvia bowleyana HOM05D002144 ORTHO05D002170 8.9e-27 124.0 135 58.5
MSTRG.10926 Avicennia marina HOM05D002144 ORTHO05D002170 3.5e-23 112.1 137 59.1
Oeu059028.1 Olea europaea HOM05D002144 ORTHO05D002170 3.5e-23 112.1 134 59.7
Oeu008518.1 Olea europaea HOM05D002144 ORTHO05D002170 5.9e-23 111.3 134 59.7
MSTRG.9534 Avicennia marina HOM05D002144 ORTHO05D002170 1.3e-22 110.2 131 56.5
MSTRG.9537 Avicennia marina HOM05D002144 ORTHO05D002170 1.5e-21 106.7 131 61.1
SGA_v2.0_scaffold4G02090 Striga asiatica HOM05D002144 ORTHO05D002170 2.5e-21 105.9 130 63.1
Cc04_g00930 Coffea canephora HOM05D002144 ORTHO05D002170 4.4e-18 95.1 137 56.9
Migut.I01115 Erythranthe guttata HOM05D002144 ORTHO05D002170 4.4e-18 95.1 118 58.5
Nn8g38544 Nelumbo nucifera HOM05D002144 ORTHO05D002170 2.4e-16 89.4 127 52.8
TWI23G1155 Tripterygium wilfordii HOM05D002144 ORTHO05D002170 5.4e-16 88.2 130 41.5
Dinv37840 Davidia involucrata HOM05D002144 ORTHO05D002170 2.7e-15 85.9 130 46.9
Gohir.A05G138200 Gossypium hirsutum HOM05D002144 ORTHO05D002170 2.7e-15 85.9 129 42.6
MBI19_g38000_MAGBIO Magnolia biondii HOM05D002144 ORTHO05D002170 2.7e-15 85.9 126 44.4
CiPaw.01G214500 Carya illinoinensis HOM05D002144 ORTHO05D002170 4.6e-15 85.1 133 51.1
Hma1.2p1_0229F.1_g096900 Hydrangea macrophylla HOM05D002144 ORTHO05D002170 4.6e-15 85.1 128 52.3
Lsat_1_v5_gn_4_91600 Lactuca sativa HOM05D002144 ORTHO05D002170 6.0e-15 84.7 126 47.6
MD17G1150200 Malus domestica HOM05D002144 ORTHO05D002170 1.3e-14 83.6 126 50.8
Gorai.009G144700 Gossypium raimondii HOM05D002144 ORTHO05D002170 2.3e-14 82.8 127 42.5
Atru.chr1.4136 Acer truncatum HOM05D002144 ORTHO05D002170 3.0e-14 82.4 125 51.2
Duzib192G0893 Durio zibethinus HOM05D002144 ORTHO05D002170 3.9e-14 82.0 129 49.6
Duzib235G0612 Durio zibethinus HOM05D002144 ORTHO05D002170 3.9e-14 82.0 127 45.7
MD09G1176600 Malus domestica HOM05D002144 ORTHO05D002170 5.0e-14 81.6 130 50.8
Dinv20398 Davidia involucrata HOM05D002144 ORTHO05D002170 8.6e-14 80.9 136 41.9
TWI14G1240 Tripterygium wilfordii HOM05D002144 ORTHO05D002170 1.1e-13 80.5 128 51.6
Lj3g0016932 Lotus japonicus HOM05D002144 ORTHO05D002170 3.3e-13 79.0 126 51.6
Aqoxy7G00990 Aquilegia oxysepala HOM05D002144 ORTHO05D002170 4.3e-13 78.6 136 47.1
Actinidia24441 Actinidia chinensis HOM05D002144 ORTHO05D002170 7.3e-13 77.8 135 45.9
COL.COLO4_30825 Corchorus olitorius HOM05D002144 ORTHO05D002170 7.3e-13 77.8 126 48.4
MBI13_g01666_MAGBIO Magnolia biondii HOM05D002144 ORTHO05D002170 7.3e-13 77.8 126 52.4
QL05p002979 Quercus lobata HOM05D002144 ORTHO05D002170 7.3e-13 77.8 126 49.2
FvH4_6g35330 Fragaria vesca HOM05D002144 ORTHO05D002170 1.6e-12 76.6 132 40.9
FAN09G1588 Fragaria x ananassa HOM05D002144 ORTHO05D002170 1.6e-12 76.6 132 40.9
GSVIVG01016701001 Vitis vinifera HOM05D002144 ORTHO05D002170 1.6e-12 76.6 129 41.9
Ca_04812_v3 Cicer arietinum L. HOM05D002144 ORTHO05D002170 2.1e-12 76.3 126 48.4
FAN14G0119 Fragaria x ananassa HOM05D002144 ORTHO05D002170 2.1e-12 76.3 139 39.6
DCAR_016099 Daucus carota HOM05D002144 ORTHO05D002170 3.6e-12 75.5 132 50.8
RcHm_v2.0_Chr2g0146781 Rosa chinensis HOM05D002144 ORTHO05D002170 3.6e-12 75.5 131 50.4
Ciclev10026754m.g Citrus clementina HOM05D002144 ORTHO05D002170 6.2e-12 74.7 128 48.4
Sc15g0000660 Simmondsia chinensis HOM05D002144 ORTHO05D002170 8.1e-12 74.3 126 54.0
Psat4g166680 Pisum sativum HOM05D002144 ORTHO05D002170 1.1e-11 73.9 105 47.6
PGR119G1483 Punica granatum HOM05D002144 ORTHO05D002170 1.4e-11 73.6 133 39.8
VMungo0331G1113 Vigna mungo HOM05D002144 ORTHO05D002170 1.4e-11 73.6 127 50.4
ATR0681G069 Amborella trichopoda HOM05D002144 ORTHO05D002170 1.8e-11 73.2 126 41.3
FAN02G3229 Fragaria x ananassa HOM05D002144 ORTHO05D002170 1.8e-11 73.2 139 46.0
Manes.04G148800 Manihot esculenta HOM05D002144 ORTHO05D002170 3.1e-11 72.4 112 56.2
Ah.08g217150 Amaranthus hybridus HOM05D002144 ORTHO05D002170 4.0e-11 72.0 127 40.9
Medtr8g022300 Medicago truncatula HOM05D002144 ORTHO05D002170 4.0e-11 72.0 126 48.4
unitig_748.g8062 Utricularia gibba HOM05D002144 ORTHO05D002170 4.0e-11 72.0 133 39.1
arahy.Tifrunner.gnm1.ann1.MBM2VS Arachis hypogaea HOM05D002144 ORTHO05D002170 5.2e-11 71.6 123 52.0
HanXRQChr04g0094481 Helianthus annuus HOM05D002144 ORTHO05D002170 6.8e-11 71.2 129 46.5
PSO223G0023 Papaver somniferum HOM05D002144 ORTHO05D002170 1.2e-10 70.5 128 49.2
PSO386G0162 Papaver somniferum HOM05D002144 ORTHO05D002170 1.5e-10 70.1 128 52.3
Peaxi162Scf00207g01541 Petunia axillaris HOM05D002144 ORTHO05D002170 2.0e-10 69.7 135 45.9
Actinidia21816 Actinidia chinensis HOM05D002144 ORTHO05D002170 2.6e-10 69.3 131 50.4
Solyc06g063060.3 Solanum lycopersicum HOM05D002144 ORTHO05D002170 3.4e-10 68.9 69 55.1
Sopen06g022510 Solanum pennellii HOM05D002144 ORTHO05D002170 3.4e-10 68.9 69 55.1
PGSC0003DMG400004897 Solanum tuberosum HOM05D002144 ORTHO05D002170 5.8e-10 68.2 71 53.5
Glyma.16G011400 Glycine max HOM05D002144 ORTHO05D002170 7.5e-10 67.8 59 59.3
EL10Ac7g16456 Beta vulgaris HOM05D002144 ORTHO05D002170 1.3e-09 67.0 131 34.4
PSO386G0143 Papaver somniferum HOM05D002144 ORTHO05D002170 1.3e-09 67.0 128 39.8
PGR102G1253 Punica granatum HOM05D002144 ORTHO05D002170 1.3e-09 67.0 126 35.7
Cpa.g.sc25.165 Carica papaya HOM05D002144 ORTHO05D002170 1.7e-09 66.6 77 51.9
Glyma.07G043000 Glycine max HOM05D002144 ORTHO05D002170 1.7e-09 66.6 108 52.8
CAN.G1743.3 Capsicum annuum HOM05D002144 ORTHO05D002170 2.9e-09 65.9 45 66.7
Hund05715 Selenicereus undatus HOM05D002144 ORTHO05D002170 2.9e-09 65.9 148 43.9
vmacro15066 Vaccinium macrocarpon HOM05D002144 ORTHO05D002170 2.9e-09 65.9 128 49.2
Ca_30856_v3 Cicer arietinum L. HOM05D002144 ORTHO05D002170 3.7e-09 65.5 107 52.3
Zm00001eb313950 Zea mays HOM05D002144 ORTHO05D002170 3.7e-09 65.5 60 60.0
ClCG07G014400 Citrullus lanatus HOM05D002144 ORTHO05D002170 6.4e-09 64.7 129 45.7
PSO223G0021 Papaver somniferum HOM05D002144 ORTHO05D002170 8.3e-09 64.3 127 37.8
Zm00001eb040560 Zea mays HOM05D002144 ORTHO05D002170 8.3e-09 64.3 131 36.6
CiPaw.02G133200 Carya illinoinensis HOM05D002144 ORTHO05D002170 1.1e-08 63.9 76 51.3
ECA232G0343 Erigeron canadensis HOM05D003140 ORTHO05D003851 1.4e-08 63.5 135 42.2
Phvul.010G126600 Phaseolus vulgaris HOM05D002144 ORTHO05D002170 1.4e-08 63.5 105 42.9
Thecc.06G126600 Theobroma cacao HOM05D002144 ORTHO05D002170 1.4e-08 63.5 118 47.5
Lalb_Chr10g0101281 Lupinus albus HOM05D002144 ORTHO05D002170 1.9e-08 63.2 59 57.6
Potri.001G164800 Populus trichocarpa HOM05D002144 ORTHO05D002170 1.9e-08 63.2 107 48.6
Potri.003G070500 Populus trichocarpa HOM05D002144 ORTHO05D002170 1.9e-08 63.2 115 47.8
Prupe.3G035700 Prunus persica HOM05D002144 ORTHO05D002170 1.9e-08 63.2 113 46.9
Rhsim08G0242200 Rhododendron simsii HOM05D002144 ORTHO05D002170 4.1e-08 62.0 126 48.4
Eucgr.B01910 Eucalyptus grandis HOM05D002144 ORTHO05D002170 7.1e-08 61.2 32 81.2
MELO3C015306.2 Cucumis melo HOM05D002144 ORTHO05D002170 1.2e-07 60.5 37 73.0
Thhalv10011865m.g Eutrema salsugineum HOM05D002144 ORTHO05D002170 1.2e-07 60.5 55 60.0
Gohir.D09G075100 Gossypium hirsutum HOM05D002144 ORTHO05D002170 1.2e-07 60.5 118 44.9
Nitab4.5_0003137g0020 Nicotiana tabacum HOM05D002144 ORTHO05D002170 1.2e-07 60.5 69 46.4
AT1G54070 Arabidopsis thaliana HOM05D002144 ORTHO05D002170 2.7e-07 59.3 76 46.1
CsaV3_2G006690 Cucumis sativus L. HOM05D002144 ORTHO05D002170 2.7e-07 59.3 36 72.2
Gohir.D05G140350 Gossypium hirsutum HOM05D002144 ORTHO05D002170 2.7e-07 59.3 127 34.6
Manes.11G015300 Manihot esculenta HOM05D002144 ORTHO05D002170 2.7e-07 59.3 76 48.7
Sabra01G0128200 Salix brachista HOM05D002144 ORTHO05D002170 2.7e-07 59.3 80 48.8
PSO729G0021 Papaver somniferum HOM05D002144 ORTHO05D002170 3.5e-07 58.9 31 77.4
CANSAT56G1652 Cannabis sativa HOM05D002144 ORTHO05D002170 4.6e-07 58.5 31 80.6
Carub.0001s4330 Capsella rubella HOM05D002144 ORTHO05D002170 4.6e-07 58.5 41 65.9
Ca_09348_v3 Cicer arietinum L. HOM05D002144 ORTHO05D002170 4.6e-07 58.5 36 66.7
Psat3g011320 Pisum sativum HOM05D002144 ORTHO05D002170 4.6e-07 58.5 32 75.0
Haze_16090 Corylus avellana HOM05D002144 ORTHO05D002170 6.0e-07 58.2 73 53.4
Gohir.A09G075400 Gossypium hirsutum HOM05D002144 ORTHO05D002170 6.0e-07 58.2 117 44.4
Gorai.006G090200 Gossypium raimondii HOM05D002144 ORTHO05D002170 6.0e-07 58.2 117 43.6
Cpa.g.sc327.9 Carica papaya HOM05D002144 ORTHO05D002170 7.8e-07 57.8 36 69.4
ClCG02G015400 Citrullus lanatus HOM05D004840 ORTHO05D005751 7.8e-07 57.8 31 77.4
MD04G1198800 Malus domestica HOM05D002144 ORTHO05D002170 7.8e-07 57.8 49 59.2
Nitab4.5_0002716g0090 Nicotiana tabacum HOM05D002144 ORTHO05D002170 7.8e-07 57.8 139 43.2
PSO724G0168 Papaver somniferum HOM05D002144 ORTHO05D002170 7.8e-07 57.8 31 74.2
TWI56G1061 Tripterygium wilfordii HOM05D002144 ORTHO05D002170 7.8e-07 57.8 40 62.5
Ciclev10002843m.g Citrus clementina HOM05D002144 ORTHO05D002170 1.0e-06 57.4 73 45.2
MELO3C022686.2 Cucumis melo HOM05D002144 ORTHO05D002170 1.0e-06 57.4 135 44.4
CsaV3_1G038820 Cucumis sativus L. HOM05D002144 ORTHO05D002170 1.3e-06 57.0 36 69.4
SalBow7G0387 Salvia bowleyana HOM05D002144 ORTHO05D002170 1.3e-06 57.0 32 75.0
TPR.G16655 Trifolium pratense HOM05D002144 ORTHO05D002170 1.3e-06 57.0 132 46.2
AL1G62770 Arabidopsis lyrata HOM05D002144 ORTHO05D002170 1.7e-06 56.6 55 56.4
arahy.Tifrunner.gnm1.ann1.FS7ZHJ Arachis hypogaea HOM05D002144 ORTHO05D002170 1.7e-06 56.6 31 74.2
CANSAT56G3315 Cannabis sativa HOM05D002144 ORTHO05D002170 1.7e-06 56.6 31 74.2
Cfa006639 Carpinus fangiana HOM05D002144 ORTHO05D002170 1.7e-06 56.6 31 74.2
Haze_04128 Corylus avellana HOM05D002144 ORTHO05D002170 1.7e-06 56.6 31 74.2
Eucgr.I02133 Eucalyptus grandis HOM05D002144 ORTHO05D002170 1.7e-06 56.6 33 75.8
Lalb_Chr18g0045821 Lupinus albus HOM05D002144 ORTHO05D002170 1.7e-06 56.6 31 74.2
Hund07106 Selenicereus undatus HOM05D002144 ORTHO05D002170 1.7e-06 56.6 68 50.0
VMungo0720G1086 Vigna mungo HOM05D002144 ORTHO05D002170 1.7e-06 56.6 31 74.2
Ah.04g161190 Amaranthus hybridus HOM05D002144 ORTHO05D002170 2.3e-06 56.2 40 60.0
BcaB07g33437 Brassica carinata HOM05D002144 ORTHO05D002170 2.3e-06 56.2 59 54.2
CARHR044400 Cardamine hirsuta HOM05D002144 ORTHO05D002170 2.3e-06 56.2 31 77.4
ClCG03G017140 Citrullus lanatus HOM05D002144 ORTHO05D002170 2.3e-06 56.2 62 53.2
FAN05G3077 Fragaria x ananassa HOM05D002144 ORTHO05D002170 2.3e-06 56.2 125 44.8
MBI18_g06040_MAGBIO Magnolia biondii HOM05D002144 ORTHO05D002170 2.3e-06 56.2 36 66.7
Medtr7g112860 Medicago truncatula HOM05D002144 ORTHO05D002170 2.3e-06 56.2 32 71.9
Sed0008928 Sechium edule HOM05D002144 ORTHO05D002170 2.3e-06 56.2 56 58.9
Aa31LG2G11660 Aethionema arabicum HOM05D002144 ORTHO05D002170 3.0e-06 55.8 31 74.2
AL1G65760 Arabidopsis lyrata HOM05D002144 ORTHO05D002170 3.0e-06 55.8 31 74.2
AT1G56220 Arabidopsis thaliana HOM05D002144 ORTHO05D002170 3.0e-06 55.8 31 74.2
BcaC03g16170 Brassica carinata HOM05D002144 ORTHO05D002170 3.0e-06 55.8 31 74.2
A02p24940 Brassica napus HOM05D002144 ORTHO05D002170 3.0e-06 55.8 31 74.2
C02p39100 Brassica napus HOM05D002144 ORTHO05D002170 3.0e-06 55.8 31 74.2
BolC2t09920H Brassica oleracea HOM05D002144 ORTHO05D002170 3.0e-06 55.8 31 74.2
BraA02t07484Z Brassica rapa HOM05D002144 ORTHO05D002170 3.0e-06 55.8 31 74.2
AUR62005218 Chenopodium quinoa HOM05D002144 ORTHO05D002170 3.0e-06 55.8 35 68.6
Thhalv10029065m.g Eutrema salsugineum HOM05D002144 ORTHO05D002170 3.0e-06 55.8 31 74.2
PGR031G3340 Punica granatum HOM05D002144 ORTHO05D002170 3.0e-06 55.8 56 51.8
Sp6g02660 Schrenkiella parvula HOM05D002144 ORTHO05D002170 3.0e-06 55.8 31 74.2
Sed0018160 Sechium edule HOM05D002144 ORTHO05D002170 3.0e-06 55.8 56 58.9
THA.LOC104820752 Tarenaya hassleriana HOM05D002144 ORTHO05D002170 3.0e-06 55.8 31 74.2
CARHR289760 Cardamine hirsuta HOM05D002144 ORTHO05D002170 3.9e-06 55.5 31 74.2
MELO3C024325.2 Cucumis melo HOM05D002144 ORTHO05D002170 3.9e-06 55.5 83 44.6
Glyma.20G237200 Glycine max HOM05D002144 ORTHO05D002170 3.9e-06 55.5 84 45.2
Lj1g0021138 Lotus japonicus HOM05D002144 ORTHO05D002170 3.9e-06 55.5 32 68.8
SGA_v2.0_scaffold80G25892 Striga asiatica HOM05D002144 ORTHO05D002170 3.9e-06 55.5 31 71.0
TPR.G33200 Trifolium pratense HOM05D002144 ORTHO05D002170 3.9e-06 55.5 32 71.9
BcaB01g02012 Brassica carinata HOM05D002144 ORTHO05D002170 5.1e-06 55.1 31 71.0
BcaC01g01556 Brassica carinata HOM05D002144 ORTHO05D002170 5.1e-06 55.1 31 71.0
BcaC04g24010 Brassica carinata HOM05D002144 ORTHO05D002170 5.1e-06 55.1 31 71.0
C03p93120 Brassica napus HOM05D002144 ORTHO05D002170 5.1e-06 55.1 31 71.0
C09p02240 Brassica napus HOM05D002144 ORTHO05D002170 5.1e-06 55.1 31 71.0
BolC3t21612H Brassica oleracea HOM05D002144 ORTHO05D002170 5.1e-06 55.1 31 71.0
BolC9t53152H Brassica oleracea HOM05D002144 ORTHO05D002170 5.1e-06 55.1 31 71.0
Carub.0002s0799 Capsella rubella HOM05D002144 ORTHO05D002170 5.1e-06 55.1 69 44.9
AUR62000749 Chenopodium quinoa HOM05D002144 ORTHO05D002170 5.1e-06 55.1 35 68.6
AUR62000750 Chenopodium quinoa HOM05D002144 ORTHO05D002170 5.1e-06 55.1 35 68.6
Os09g0437500 Oryza sativa ssp. japonica HOM05D002144 ORTHO05D002170 5.1e-06 55.1 33 72.7
Sc09g0002900 Simmondsia chinensis HOM05D002144 ORTHO05D002170 5.1e-06 55.1 32 68.8
BcaC01g06736 Brassica carinata HOM05D002144 ORTHO05D002170 6.6e-06 54.7 31 71.0
BcaC01g06737 Brassica carinata HOM05D002144 ORTHO05D002170 6.6e-06 54.7 31 71.0
A03p30880 Brassica napus HOM05D002144 ORTHO05D002170 6.6e-06 54.7 31 71.0
C03p37650 Brassica napus HOM05D002144 ORTHO05D002170 6.6e-06 54.7 31 71.0
BolC3t16055H Brassica oleracea HOM05D002144 ORTHO05D002170 6.6e-06 54.7 31 71.0
BraA03t12265Z Brassica rapa HOM05D002144 ORTHO05D002170 6.6e-06 54.7 31 71.0
ClCG09G001220 Citrullus lanatus HOM05D002144 ORTHO05D002170 6.6e-06 54.7 56 57.1
CsaV3_7G034150 Cucumis sativus L. HOM05D002144 ORTHO05D002170 6.6e-06 54.7 80 47.5
Glyma.03G234800 Glycine max HOM05D002144 ORTHO05D002170 6.6e-06 54.7 31 71.0
Glyma.19G232400 Glycine max HOM05D002144 ORTHO05D002170 6.6e-06 54.7 31 71.0
Lj5g0009461 Lotus japonicus HOM05D002144 ORTHO05D002170 6.6e-06 54.7 32 68.8
Phvul.007G197700 Phaseolus vulgaris HOM05D002144 ORTHO05D002170 6.6e-06 54.7 31 71.0
PGR083G0389 Punica granatum HOM05D002144 ORTHO05D002170 6.6e-06 54.7 31 71.0
QL03p019949 Quercus lobata HOM05D002144 ORTHO05D002170 6.6e-06 54.7 31 74.2
Sed0008740 Sechium edule HOM05D002144 ORTHO05D002170 6.6e-06 54.7 134 36.6
Aqoxy5G00761 Aquilegia oxysepala HOM05D002144 ORTHO05D002170 8.6e-06 54.3 31 71.0
Duzib106G0149 Durio zibethinus HOM05D002144 ORTHO05D002170 8.6e-06 54.3 37 62.2
Duzib128G0499 Durio zibethinus HOM05D002144 ORTHO05D002170 8.6e-06 54.3 31 67.7
Eucgr.H04545 Eucalyptus grandis HOM05D002144 ORTHO05D002170 8.6e-06 54.3 70 45.7
Gohir.A11G268700 Gossypium hirsutum HOM05D002144 ORTHO05D002170 8.6e-06 54.3 31 67.7
Gohir.D11G278700 Gossypium hirsutum HOM05D002144 ORTHO05D002170 8.6e-06 54.3 31 67.7
Gohir.D13G180500 Gossypium hirsutum HOM05D002144 ORTHO05D002170 8.6e-06 54.3 31 67.7
Gorai.007G300900 Gossypium raimondii HOM05D002144 ORTHO05D002170 8.6e-06 54.3 31 67.7
Gorai.013G205900 Gossypium raimondii HOM05D002144 ORTHO05D002170 8.6e-06 54.3 31 67.7
Manes.08G116600 Manihot esculenta HOM05D002144 ORTHO05D002170 8.6e-06 54.3 31 71.0
Sc16g0008780 Simmondsia chinensis HOM05D002144 ORTHO05D002170 8.6e-06 54.3 55 49.1
Thecc.05G314100 Theobroma cacao HOM05D002144 ORTHO05D002170 8.6e-06 54.3 31 67.7
HPP92_006918 Vanilla planifolia HOM05D002144 ORTHO05D002170 8.6e-06 54.3 30 80.0


User provided reference genes

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