Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Migut.D00855 Erythranthe guttata HOM05D006395 ORTHO05D007894 2.4e-156 555.8 368 100.0
SGA_v2.0_scaffold20G09294 Striga asiatica HOM05D006395 ORTHO05D007894 1.1e-92 344.4 377 69.8
MSTRG.21234 Avicennia marina HOM05D006395 ORTHO05D007894 5.3e-87 325.5 366 63.9
vmacro02938 Vaccinium macrocarpon HOM05D006395 ORTHO05D007894 1.4e-82 310.8 382 61.0
Glyma.18G059000 Glycine max HOM05D006395 ORTHO05D007894 2.8e-80 303.1 368 59.0
Peaxi162Scf00053g02113 Petunia axillaris HOM05D006395 ORTHO05D007894 3.1e-79 299.7 367 58.9
Cc01_g14640 Coffea canephora HOM05D006395 ORTHO05D007894 2.0e-78 297.0 372 60.2
Actinidia27062 Actinidia chinensis HOM05D006395 ORTHO05D007894 1.0e-77 294.7 364 61.3
CsaV3_6G015980 Cucumis sativus L. HOM05D006395 ORTHO05D007894 2.5e-76 290.0 362 64.1
Lalb_Chr18g0051251 Lupinus albus HOM05D006395 ORTHO05D007894 2.5e-76 290.0 369 58.3
PSO170G0213 Papaver somniferum HOM05D006395 ORTHO05D007894 3.3e-76 289.7 376 57.2
QL01p039673 Quercus lobata HOM05D006395 ORTHO05D007894 5.5e-76 288.9 356 61.5
MELO3C026838.2 Cucumis melo HOM05D006395 ORTHO05D007894 9.5e-76 288.1 362 63.8
Haze_24385 Corylus avellana HOM05D006395 ORTHO05D007894 1.6e-75 287.3 365 59.5
Cfa011744 Carpinus fangiana HOM05D006395 ORTHO05D007894 1.4e-74 284.3 369 59.1
Carub.0004s1124 Capsella rubella HOM05D006395 ORTHO05D007894 3.0e-74 283.1 372 58.3
arahy.Tifrunner.gnm1.ann1.P58CS4 Arachis hypogaea HOM05D006395 ORTHO05D007894 4.0e-74 282.7 370 60.5
Sp4g12670 Schrenkiella parvula HOM05D006395 ORTHO05D007894 1.5e-73 280.8 367 57.2
BcaC02g08055 Brassica carinata HOM05D006395 ORTHO05D007894 3.4e-73 279.6 370 56.5
Sed0008967 Sechium edule HOM05D006395 ORTHO05D007894 3.4e-73 279.6 362 56.9
Manes.18G144200 Manihot esculenta HOM05D006395 ORTHO05D007894 1.7e-72 277.3 371 56.6
Rhsim13G0066200 Rhododendron simsii HOM05D006395 ORTHO05D007894 1.7e-72 277.3 373 57.6
Lj2C1089G4 Lonicera japonica HOM05D006395 ORTHO05D007894 2.8e-72 276.6 364 56.0
Potri.001G280500 Populus trichocarpa HOM05D006395 ORTHO05D007894 2.8e-72 276.6 361 56.5
AT2G30105 Arabidopsis thaliana HOM05D006395 ORTHO05D007894 4.9e-72 275.8 373 58.7
PGSC0003DMG400020546 Solanum tuberosum HOM05D006395 ORTHO05D007894 4.9e-72 275.8 370 57.3
ClCG02G019360 Citrullus lanatus HOM05D006395 ORTHO05D007894 6.3e-72 275.4 357 58.0
Psat5g157120 Pisum sativum HOM05D006395 ORTHO05D007894 8.3e-72 275.0 369 54.7
PSO017G1403 Papaver somniferum HOM05D006395 ORTHO05D007894 1.1e-71 274.6 379 55.7
Lj6g0016849 Lotus japonicus HOM05D006395 ORTHO05D007894 1.8e-71 273.9 368 54.9
GSVIVG01024681001 Vitis vinifera HOM05D006395 ORTHO05D007894 5.4e-71 272.3 370 57.0
Duzib168G0704 Durio zibethinus HOM05D006395 ORTHO05D007894 9.2e-71 271.6 384 53.1
Aqoxy1G01323 Aquilegia oxysepala HOM05D006395 ORTHO05D007894 1.2e-70 271.2 366 61.5
CARHR123410 Cardamine hirsuta HOM05D006395 ORTHO05D007894 1.6e-70 270.8 365 58.9
AL4G24880 Arabidopsis lyrata HOM05D006395 ORTHO05D007894 2.0e-70 270.4 367 58.9
arahy.Tifrunner.gnm1.ann1.775QX7 Arachis hypogaea HOM05D006395 ORTHO05D007894 2.0e-70 270.4 370 60.0
Thhalv10016813m.g Eutrema salsugineum HOM05D006395 ORTHO05D007894 2.0e-70 270.4 373 57.4
Medtr3g465570 Medicago truncatula HOM05D006395 ORTHO05D007894 3.5e-70 269.6 359 55.2
PGR102G2618 Punica granatum HOM05D006395 ORTHO05D007894 3.5e-70 269.6 362 52.8
Sopen06g002210 Solanum pennellii HOM05D006395 ORTHO05D007894 3.5e-70 269.6 372 57.0
Gohir.D03G141400 Gossypium hirsutum HOM05D006395 ORTHO05D007894 5.9e-70 268.9 371 58.0
Atru.chr3.4150 Acer truncatum HOM05D006395 ORTHO05D007894 7.8e-70 268.5 369 55.3
Thecc.09G354500 Theobroma cacao HOM05D006395 ORTHO05D007894 7.8e-70 268.5 387 53.7
MD03G1062200 Malus domestica HOM05D006395 ORTHO05D007894 1.0e-69 268.1 369 55.0
Solyc06g007250.4 Solanum lycopersicum HOM05D006395 ORTHO05D007894 1.0e-69 268.1 372 56.7
A04p22790 Brassica napus HOM05D006395 ORTHO05D007894 1.7e-69 267.3 361 59.6
BraA04t17818Z Brassica rapa HOM05D006395 ORTHO05D007894 1.7e-69 267.3 362 59.4
Nn2g10958 Nelumbo nucifera HOM05D006395 ORTHO05D007894 2.3e-69 266.9 362 58.3
TPR.G32918 Trifolium pratense HOM05D006395 ORTHO05D007894 2.9e-69 266.5 354 60.2
VMungo0540G1476 Vigna mungo HOM05D006395 ORTHO05D007894 2.9e-69 266.5 362 58.0
BcaB06g28340 Brassica carinata HOM05D006395 ORTHO05D007894 5.0e-69 265.8 360 58.1
HPP92_025106 Vanilla planifolia HOM05D006395 ORTHO05D007894 5.0e-69 265.8 371 56.3
COL.COLO4_11118 Corchorus olitorius HOM05D006395 ORTHO05D007894 1.5e-68 264.2 367 53.7
CAN.G241.20 Capsicum annuum HOM05D006395 ORTHO05D007894 4.3e-68 262.7 362 55.5
CiPaw.13G072800 Carya illinoinensis HOM05D006395 ORTHO05D007894 4.3e-68 262.7 366 57.7
DCAR_018217 Daucus carota HOM05D006395 ORTHO05D007894 4.3e-68 262.7 362 56.6
FvH4_3g39360 Fragaria vesca HOM05D006395 ORTHO05D007894 5.6e-68 262.3 366 51.9
BcaC02g08052 Brassica carinata HOM05D006395 ORTHO05D007894 1.2e-67 261.2 366 58.5
C04p58990 Brassica napus HOM05D006395 ORTHO05D007894 1.2e-67 261.2 366 58.5
Sc06g0008170 Simmondsia chinensis HOM05D006395 ORTHO05D007894 4.7e-67 259.2 367 60.2
FAN25G1635 Fragaria x ananassa HOM05D006395 ORTHO05D007894 6.1e-67 258.8 366 51.6
Eucgr.B02227 Eucalyptus grandis HOM05D006395 ORTHO05D007894 1.0e-66 258.1 368 53.3
FAN11G3343 Fragaria x ananassa HOM05D006395 ORTHO05D007894 1.0e-66 258.1 366 51.4
Hund05040 Selenicereus undatus HOM05D006395 ORTHO05D007894 1.8e-66 257.3 363 59.0
Prupe.6G052000 Prunus persica HOM05D006395 ORTHO05D007894 2.3e-66 256.9 366 54.1
Cpa.g.sc2.390 Carica papaya HOM05D006395 ORTHO05D007894 6.8e-66 255.4 365 54.2
CDE12G0063 Ceratophyllum demersum HOM05D006395 ORTHO05D007894 6.8e-66 255.4 371 53.9
RcHm_v2.0_Chr5g0070801 Rosa chinensis HOM05D006395 ORTHO05D007894 6.8e-66 255.4 370 54.6
FAN21G1642 Fragaria x ananassa HOM05D006395 ORTHO05D007894 7.5e-65 251.9 380 49.7
Hma1.2p1_0841F.1_g226810 Hydrangea macrophylla HOM05D006395 ORTHO05D007894 9.8e-65 251.5 356 54.2
Aa31LG5G6570 Aethionema arabicum HOM05D006395 ORTHO05D007894 3.7e-64 249.6 365 59.5
THA.LOC104800755 Tarenaya hassleriana HOM05D006395 ORTHO05D007894 4.6e-62 242.7 369 53.9
Nitab4.5_0001941g0070 Nicotiana tabacum HOM05D006395 ORTHO05D007894 7.8e-62 241.9 369 53.9
Ciclev10028704m.g Citrus clementina HOM05D006395 ORTHO05D007894 3.6e-59 233.0 362 51.4
Zm00001eb046860 Zea mays HOM05D006395 ORTHO05D007894 8.0e-59 231.9 361 51.2
EL10Ac7g15889 Beta vulgaris HOM05D006395 ORTHO05D007894 8.9e-58 228.4 367 47.4
Sabra16G0174100 Salix brachista HOM05D006395 ORTHO05D007894 3.4e-57 226.5 361 52.6
Lsat_1_v5_gn_8_111040 Lactuca sativa HOM05D006395 ORTHO05D007894 2.9e-56 223.4 366 58.2
Nitab4.5_0000967g0070 Nicotiana tabacum HOM05D006395 ORTHO05D007894 8.3e-56 221.9 369 48.8
Dinv28676 Davidia involucrata HOM05D006395 ORTHO05D007894 1.1e-55 221.5 191 61.3
Ca_14986_v3 Cicer arietinum L. HOM05D006395 ORTHO05D007894 7.0e-55 218.8 317 54.9
CSS0046123 Camellia sinensis var. sinensis HOM05D006395 ORTHO05D007894 3.5e-54 216.5 206 58.3
Actinidia23216 Actinidia chinensis HOM05D006395 ORTHO05D007894 7.8e-54 215.3 197 58.9
TWI31G1172 Tripterygium wilfordii HOM05D006395 ORTHO05D007894 3.9e-53 213.0 331 53.8
ECA236G5129 Erigeron canadensis HOM05D006395 ORTHO05D007894 6.6e-53 212.2 366 54.4
Gorai.003G148100 Gossypium raimondii HOM05D006395 ORTHO05D007894 1.1e-50 204.9 200 56.0
Mapoly0043s0125 Marchantia polymorpha HOM05D006395 ORTHO05D007894 6.8e-50 202.2 394 42.9
Gohir.A03G027300 Gossypium hirsutum HOM05D006395 ORTHO05D007894 2.6e-49 200.3 309 56.3
MBI15_g36485_MAGBIO Magnolia biondii HOM05D006395 ORTHO05D007894 2.6e-49 200.3 384 46.9
BolC4t27411H Brassica oleracea HOM05D006395 ORTHO05D007894 3.4e-49 199.9 193 57.5
HanXRQChr05g0130471 Helianthus annuus HOM05D006395 ORTHO05D007894 9.9e-49 198.4 359 53.2
Phvul.006G072100 Phaseolus vulgaris HOM05D006395 ORTHO05D007894 9.9e-49 198.4 194 53.6
AUR62036248 Chenopodium quinoa HOM05D006395 ORTHO05D007894 3.5e-46 189.9 363 44.9
ATR0174G031 Amborella trichopoda HOM05D006395 ORTHO05D007894 5.6e-44 182.6 191 49.7
TAR357G0003 Trochodendron aralioides HOM05D006395 ORTHO05D007894 5.6e-44 182.6 278 55.8
Lj9A530T24 Lonicera japonica HOM05D006395 ORTHO05D007894 5.2e-42 176.0 198 49.0
AagrBONN_evm.TU.Sc2ySwM_228.749 Anthoceros agrestis HOM05D006395 ORTHO05D007894 1.1e-39 168.3 387 41.3
SEGI_13349 Sequoiadendron giganteum HOM05D006395 ORTHO05D007894 2.4e-39 167.2 184 52.7
AUR62009698 Chenopodium quinoa HOM05D006395 ORTHO05D007894 2.1e-38 164.1 386 41.7
SMO198G0061 Selaginella moellendorffii HOM05D006395 ORTHO05D007894 6.0e-38 162.5 364 40.4
FAN16G1183 Fragaria x ananassa HOM05D006395 ORTHO05D007894 5.1e-37 159.5 209 44.5
Cc03_g12880 Coffea canephora HOM05D006395 ORTHO05D007894 9.6e-36 155.2 163 55.8
unitig_0.g1179 Utricularia gibba HOM05D006395 ORTHO05D007894 4.0e-34 149.8 376 43.9
Hma1.2p1_0841F.1_g226820 Hydrangea macrophylla HOM05D006395 ORTHO05D007894 3.4e-33 146.7 251 53.8
CAN.G241.12 Capsicum annuum HOM05D006395 ORTHO05D007894 2.1e-30 137.5 275 57.5
Os10g0456200 Oryza sativa ssp. japonica HOM05D006395 ORTHO05D007894 2.1e-30 137.5 131 55.0
Cc03_g12890 Coffea canephora HOM05D006395 ORTHO05D007894 3.9e-29 133.3 86 74.4
Pp3c8_15530 Physcomitrium patens HOM05D006395 ORTHO05D007894 1.5e-28 131.3 200 37.5
Migut.D00856 Erythranthe guttata HOM05D006395 ORTHO05D007894 6.9e-26 122.5 70 84.3
PSO339G4463 Papaver somniferum HOM05D006395 ORTHO05D007894 1.3e-24 118.2 77 74.0
ATR0174G042 Amborella trichopoda HOM05D006395 ORTHO05D007894 3.5e-22 110.2 85 63.5
Nitab4.5_0000967g0090 Nicotiana tabacum HOM05D000734 ORTHO05D002223 3.9e-21 106.7 84 64.3
PSO675G0236 Papaver somniferum HOM05D006395 ORTHO05D007894 8.7e-21 105.5 115 52.2
PSO782G5619 Papaver somniferum HOM05D006395 ORTHO05D007894 8.7e-21 105.5 65 76.9
Duzib150G1550 Durio zibethinus HOM05D006395 ORTHO05D007894 1.1e-20 105.1 113 49.6
Glyma.11G166200 Glycine max HOM05D006395 ORTHO05D007894 1.1e-20 105.1 110 48.2
RcHm_v2.0_Chr5g0070821 Rosa chinensis HOM05D006395 ORTHO05D007894 2.5e-20 104.0 63 77.8
Cre16.g684800 Chlamydomonas reinhardtii HOM05D006395 ORTHO05D007894 1.4e-15 88.2 433 33.9
CBR_g52452 Chara braunii HOM05D006395 ORTHO05D007458 6.0e-14 82.8 81 51.9
FAN07G0114 Fragaria x ananassa HOM05D005731 ORTHO05D012104 1.3e-13 81.6 55 69.1
Nn4g23380 Nelumbo nucifera HOM05D006238 ORTHO05D007458 1.3e-13 81.6 250 25.6
SEGI_40979 Sequoiadendron giganteum HOM05D006395 ORTHO05D007894 1.3e-13 81.6 196 46.9
MD11G1065800 Malus domestica HOM05D006395 ORTHO05D007894 3.1e-10 70.5 113 38.9
SEGI_33382 Sequoiadendron giganteum HOM05D006395 ORTHO05D007894 1.5e-09 68.2 59 55.9
Nitab4.5_0008731g0020 Nicotiana tabacum HOM05D000734 ORTHO05D002223 2.6e-09 67.4 53 62.3
FAN06G1459 Fragaria x ananassa HOM05D006395 ORTHO05D007894 5.8e-09 66.2 79 49.4
CBR_g32352 Chara braunii HOM05D000019 ORTHO05D000002 1.0e-08 65.5 95 33.7
PRCOL_00004668 Prasinoderma coloniale HOM05D006395 ORTHO05D007894 6.5e-08 62.8 388 32.5
Oeu062485.1 Olea europaea HOM05D006238 ORTHO05D007458 8.4e-08 62.4 61 47.5
Aa31LG3G18600 Aethionema arabicum HOM05D006238 ORTHO05D007458 1.9e-07 61.2 81 39.5
CDE10G0764 Ceratophyllum demersum HOM05D000773 ORTHO05D000588 3.2e-07 60.5 80 40.0
Glyma.04G164100 Glycine max HOM05D006238 ORTHO05D007458 4.2e-07 60.1 250 48.8
BcaB02g10983 Brassica carinata HOM05D045558 ORTHO05D039483 5.5e-07 59.7 51 58.8
Medtr3g023830 Medicago truncatula HOM05D006238 ORTHO05D007458 5.5e-07 59.7 250 48.4
Nitab4.5_0004284g0060 Nicotiana tabacum HOM05D006238 ORTHO05D007458 5.5e-07 59.7 80 40.0
Oeu038367.1 Olea europaea HOM05D006238 ORTHO05D007458 9.3e-07 58.9 61 42.6
PGR044G1626 Punica granatum HOM05D006238 ORTHO05D007458 9.3e-07 58.9 61 42.6
Solyc03g115410.3 Solanum lycopersicum HOM05D006238 ORTHO05D007458 1.2e-06 58.5 59 42.4
MSTRG.22972 Avicennia marina HOM05D006238 ORTHO05D007458 1.6e-06 58.2 61 45.9
Sopen03g034410 Solanum pennellii HOM05D006238 ORTHO05D007458 1.6e-06 58.2 59 42.4
FvH4_5g14250 Fragaria vesca HOM05D006238 ORTHO05D007458 2.1e-06 57.8 61 41.0
Os03g0212200 Oryza sativa ssp. japonica HOM05D006238 ORTHO05D007458 2.1e-06 57.8 63 39.7
TPR.G12219 Trifolium pratense HOM05D006238 ORTHO05D007458 2.1e-06 57.8 80 36.2
TWI81G0503 Tripterygium wilfordii HOM05D006238 ORTHO05D007458 2.1e-06 57.8 64 40.6
Atru.chr9.382 Acer truncatum HOM05D006238 ORTHO05D007458 2.7e-06 57.4 61 39.3
CAN.G479.27 Capsicum annuum HOM05D006238 ORTHO05D007458 2.7e-06 57.4 59 40.7
ECA232G0231 Erigeron canadensis HOM05D000954 ORTHO05D000822 2.7e-06 57.4 61 42.6
Sabra01G0166400 Salix brachista HOM05D005162 ORTHO05D007064 2.7e-06 57.4 129 31.8
Sc07g0004980 Simmondsia chinensis HOM05D005162 ORTHO05D007064 2.7e-06 57.4 82 40.2
Cpa.g.sc94.12 Carica papaya HOM05D006238 ORTHO05D007458 3.5e-06 57.0 68 42.6
Duzib205G0643 Durio zibethinus HOM05D006238 ORTHO05D007458 3.5e-06 57.0 64 39.1
Gohir.D12G183800 Gossypium hirsutum HOM05D006238 ORTHO05D007458 3.5e-06 57.0 61 39.3
CANSAT80G2720 Cannabis sativa HOM05D006238 ORTHO05D007458 4.6e-06 56.6 61 41.0
Cpa.g.sc94.13 Carica papaya HOM05D006238 ORTHO05D007458 4.6e-06 56.6 61 39.3
HanXRQChr14g0439161 Helianthus annuus HOM05D006238 ORTHO05D007458 4.6e-06 56.6 58 43.1
arahy.Tifrunner.gnm1.ann1.XMW6VU Arachis hypogaea HOM05D006238 ORTHO05D007458 6.1e-06 56.2 80 36.2
Ca_13804_v3 Cicer arietinum L. HOM05D006238 ORTHO05D007458 6.1e-06 56.2 64 40.6
COL.COLO4_22216 Corchorus olitorius HOM05D006238 ORTHO05D007458 6.1e-06 56.2 61 41.0
MELO3C017212.2 Cucumis melo HOM05D006238 ORTHO05D007458 6.1e-06 56.2 61 41.0
CsaV3_1G002770 Cucumis sativus L. HOM05D006238 ORTHO05D007458 6.1e-06 56.2 61 41.0
Gohir.A09G243100 Gossypium hirsutum HOM05D006238 ORTHO05D007458 6.1e-06 56.2 61 39.3
Gohir.D09G243800 Gossypium hirsutum HOM05D006238 ORTHO05D007458 6.1e-06 56.2 61 39.3
Gorai.006G267600 Gossypium raimondii HOM05D006238 ORTHO05D007458 6.1e-06 56.2 61 39.3
HPP92_027112 Vanilla planifolia HOM05D006238 ORTHO05D007458 6.1e-06 56.2 65 46.2
BcaB05g21597 Brassica carinata HOM05D006238 ORTHO05D007458 7.9e-06 55.8 64 40.6
Migut.L00004 Erythranthe guttata HOM05D006238 ORTHO05D007458 7.9e-06 55.8 61 41.0
RcHm_v2.0_Chr7g0182671 Rosa chinensis HOM05D006238 ORTHO05D007458 7.9e-06 55.8 61 39.3


User provided reference genes

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