Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Migut.D00784 Erythranthe guttata HOM05D004101 ORTHO05D005221 0.0e+00 1879.0 924 100.0
MSTRG.12725 Avicennia marina HOM05D004101 ORTHO05D005221 0.0e+00 1347.8 926 73.3
SGA_v2.0_scaffold158G37476 Striga asiatica HOM05D004101 ORTHO05D005221 0.0e+00 1347.8 956 72.8
SGA_v2.0_scaffold120G33012 Striga asiatica HOM05D004101 ORTHO05D005221 0.0e+00 1293.5 978 67.6
Oeu028926.1 Olea europaea HOM05D004101 ORTHO05D005221 0.0e+00 1264.2 922 69.2
SalBow2G0849 Salvia bowleyana HOM05D004101 ORTHO05D005221 0.0e+00 1227.2 970 66.2
Dinv05108 Davidia involucrata HOM05D004101 ORTHO05D005221 0.0e+00 1212.6 945 65.6
Dinv36168 Davidia involucrata HOM05D004101 ORTHO05D005221 0.0e+00 1201.0 943 65.1
Solyc01g008320.3 Solanum lycopersicum HOM05D004101 ORTHO05D005221 0.0e+00 1182.5 929 64.6
Sopen01g003840 Solanum pennellii HOM05D004101 ORTHO05D005221 0.0e+00 1177.5 936 64.2
CSS0023016 Camellia sinensis var. sinensis HOM05D004101 ORTHO05D005221 0.0e+00 1176.8 933 64.0
Actinidia29382 Actinidia chinensis HOM05D004101 ORTHO05D005221 0.0e+00 1175.6 940 64.7
QL09p002038 Quercus lobata HOM05D004101 ORTHO05D005221 0.0e+00 1162.9 936 63.9
Cfa008084 Carpinus fangiana HOM05D004101 ORTHO05D005221 0.0e+00 1151.3 943 63.2
CSS0032109 Camellia sinensis var. sinensis HOM05D004101 ORTHO05D005221 0.0e+00 1149.4 930 63.1
CiPaw.03G015400 Carya illinoinensis HOM05D004101 ORTHO05D005221 0.0e+00 1149.0 947 62.9
Duzib177G1024 Durio zibethinus HOM05D004101 ORTHO05D005221 0.0e+00 1137.9 975 60.8
Potri.013G099700 Populus trichocarpa HOM05D004101 ORTHO05D005221 0.0e+00 1134.0 931 64.0
Thecc.08G177600 Theobroma cacao HOM05D004101 ORTHO05D005221 0.0e+00 1133.6 940 62.7
GSVIVG01036377001 Vitis vinifera HOM05D004101 ORTHO05D005221 0.0e+00 1133.6 946 61.4
Nn5g27278 Nelumbo nucifera HOM05D004101 ORTHO05D005221 0.0e+00 1128.2 934 61.5
TWI18G0503 Tripterygium wilfordii HOM05D004101 ORTHO05D005221 0.0e+00 1127.5 929 62.2
Atru.chr13.2487 Acer truncatum HOM05D004101 ORTHO05D005221 0.0e+00 1125.2 928 61.6
TAR625G0099 Trochodendron aralioides HOM05D004101 ORTHO05D005221 0.0e+00 1121.3 956 61.0
Cc10_g08720 Coffea canephora HOM05D004101 ORTHO05D005221 0.0e+00 1120.1 971 62.5
Gorai.009G267200 Gossypium raimondii HOM05D004101 ORTHO05D005221 0.0e+00 1119.4 935 62.0
Ciclev10018750m.g Citrus clementina HOM05D004101 ORTHO05D005221 0.0e+00 1117.1 925 62.1
Gohir.A02G087700 Gossypium hirsutum HOM05D004101 ORTHO05D005221 0.0e+00 1117.1 935 62.1
Manes.02G221381 Manihot esculenta HOM05D004101 ORTHO05D005221 0.0e+00 1116.3 932 63.1
TAR383G0434 Trochodendron aralioides HOM05D004101 ORTHO05D005221 0.0e+00 1116.3 952 60.8
Gohir.A05G253700 Gossypium hirsutum HOM05D004101 ORTHO05D005221 0.0e+00 1115.5 927 62.6
RcHm_v2.0_Chr6g0306901 Rosa chinensis HOM05D004101 ORTHO05D005221 0.0e+00 1115.1 913 63.6
Manes.18G117901 Manihot esculenta HOM05D004101 ORTHO05D005221 0.0e+00 1113.2 951 61.9
Gorai.005G116600 Gossypium raimondii HOM05D004101 ORTHO05D005221 0.0e+00 1112.8 934 62.2
Prupe.1G442600 Prunus persica HOM05D004101 ORTHO05D005221 0.0e+00 1111.7 927 62.1
Potri.019G072300 Populus trichocarpa HOM05D004101 ORTHO05D005221 0.0e+00 1109.4 933 62.3
CANSAT78G1092 Cannabis sativa HOM05D004101 ORTHO05D005221 0.0e+00 1105.9 981 59.9
Phvul.011G002700 Phaseolus vulgaris HOM05D004101 ORTHO05D005221 0.0e+00 1100.5 931 61.3
VMungo1127G2207 Vigna mungo HOM05D004101 ORTHO05D005221 0.0e+00 1099.3 921 62.0
Lalb_Chr16g0391261 Lupinus albus HOM05D004101 ORTHO05D005221 0.0e+00 1098.6 921 62.0
EL10Ac1g01668 Beta vulgaris HOM05D004101 ORTHO05D005221 0.0e+00 1094.0 955 60.8
HanXRQChr03g0062111 Helianthus annuus HOM05D004101 ORTHO05D005221 0.0e+00 1093.6 911 62.3
Glyma.09G234500 Glycine max HOM05D004101 ORTHO05D005221 0.0e+00 1091.3 925 60.8
PGR042G3616 Punica granatum HOM05D004101 ORTHO05D005221 0.0e+00 1091.3 939 60.0
FvH4_2g35070 Fragaria vesca HOM05D004101 ORTHO05D005221 0.0e+00 1090.9 931 61.2
MD15G1088500 Malus domestica HOM05D004101 ORTHO05D005221 0.0e+00 1090.9 921 62.0
Psat7g146680 Pisum sativum HOM05D004101 ORTHO05D005221 0.0e+00 1088.6 933 60.5
arahy.Tifrunner.gnm1.ann1.BP0NKM Arachis hypogaea HOM05D004101 ORTHO05D005221 0.0e+00 1087.8 932 60.8
TWI12G0255 Tripterygium wilfordii HOM05D004101 ORTHO05D005221 0.0e+00 1087.8 919 60.7
Medtr4g033490 Medicago truncatula HOM05D004101 ORTHO05D005221 0.0e+00 1087.0 925 61.1
Lj3g0009901 Lotus japonicus HOM05D004101 ORTHO05D005221 0.0e+00 1086.6 923 61.1
CAN.G282.41 Capsicum annuum HOM05D004101 ORTHO05D005221 0.0e+00 1086.2 954 59.7
Sed0018643 Sechium edule HOM05D004101 ORTHO05D005221 0.0e+00 1084.7 935 60.4
Ca_19680_v3 Cicer arietinum L. HOM05D004101 ORTHO05D005221 0.0e+00 1083.6 909 61.7
Peaxi162Scf00021g02415 Petunia axillaris HOM05D004101 ORTHO05D005221 0.0e+00 1082.4 924 61.7
CsaV3_2G033160 Cucumis sativus L. HOM05D004101 ORTHO05D005221 0.0e+00 1078.2 944 59.9
CANSAT21G1017 Cannabis sativa HOM05D004101 ORTHO05D005221 3.2e-311 1071.6 907 61.5
MD08G1108000 Malus domestica HOM05D004101 ORTHO05D005221 3.2e-311 1071.6 929 60.6
Nitab4.5_0000069g0130 Nicotiana tabacum HOM05D004101 ORTHO05D005221 3.2e-311 1071.6 866 63.3
CARHR287040 Cardamine hirsuta HOM05D004101 ORTHO05D005221 9.5e-311 1070.1 935 59.7
AT1G31480 Arabidopsis thaliana HOM05D004101 ORTHO05D005221 1.6e-310 1069.3 928 59.7
ClCG11G008940 Citrullus lanatus HOM05D004101 ORTHO05D005221 2.1e-310 1068.9 946 59.8
Aqoxy6G00101 Aquilegia oxysepala HOM05D004101 ORTHO05D005221 3.7e-310 1068.1 1006 56.7
Aqoxy6G01398 Aquilegia oxysepala HOM05D004101 ORTHO05D005221 2.4e-309 1065.4 1011 56.1
Aqoxy2G02197 Aquilegia oxysepala HOM05D004101 ORTHO05D005221 3.4e-308 1061.6 1011 55.9
Carub.0001s2990 Capsella rubella HOM05D004101 ORTHO05D005221 3.8e-307 1058.1 927 59.1
BcaB07g32808 Brassica carinata HOM05D004101 ORTHO05D005221 1.1e-306 1056.6 930 59.8
Sp1g27280 Schrenkiella parvula HOM05D004101 ORTHO05D005221 1.1e-306 1056.6 932 59.1
FAN27G2707 Fragaria x ananassa HOM05D004101 ORTHO05D005221 1.9e-306 1055.8 941 59.6
Thhalv10006721m.g Eutrema salsugineum HOM05D004101 ORTHO05D005221 7.1e-306 1053.9 929 60.1
AL1G49570 Arabidopsis lyrata HOM05D004101 ORTHO05D005221 9.3e-306 1053.5 934 59.1
Aa31LG2G14460 Aethionema arabicum HOM05D004101 ORTHO05D005221 1.2e-305 1053.1 929 58.8
C05p30730 Brassica napus HOM05D004101 ORTHO05D005221 3.5e-305 1051.6 919 60.1
DCAR_019079 Daucus carota HOM05D004101 ORTHO05D005221 4.6e-305 1051.2 1053 55.0
Sabra13G0085500 Salix brachista HOM05D004101 ORTHO05D005221 4.6e-305 1051.2 1007 57.6
Aa31LG9G15840 Aethionema arabicum HOM05D004101 ORTHO05D005221 7.9e-305 1050.4 917 59.8
arahy.Tifrunner.gnm1.ann1.FM3HJM Arachis hypogaea HOM05D004101 ORTHO05D005221 1.8e-304 1049.3 1021 55.4
Lj9A698G58 Lonicera japonica HOM05D004101 ORTHO05D005221 3.9e-304 1048.1 932 60.1
BraA09t39007Z Brassica rapa HOM05D004101 ORTHO05D005221 8.7e-304 1047.0 927 59.2
BcaC05g27176 Brassica carinata HOM05D004101 ORTHO05D005221 1.1e-303 1046.6 919 60.0
BolC5t31805H Brassica oleracea HOM05D004101 ORTHO05D005221 1.1e-303 1046.6 919 60.0
ATR1089G044 Amborella trichopoda HOM05D004101 ORTHO05D005221 1.5e-303 1046.2 965 57.6
BraA08t33053Z Brassica rapa HOM05D004101 ORTHO05D005221 3.3e-303 1045.0 938 58.0
A08p10530 Brassica napus HOM05D004101 ORTHO05D005221 4.8e-302 1041.2 939 57.7
FAN20G0554 Fragaria x ananassa HOM05D004101 ORTHO05D005221 1.8e-301 1039.3 928 59.7
Eucgr.F02954 Eucalyptus grandis HOM05D004101 ORTHO05D005221 3.4e-300 1035.0 933 57.8
BcaC07g37755 Brassica carinata HOM05D004101 ORTHO05D005221 2.2e-299 1032.3 924 58.3
BolC8t48140H Brassica oleracea HOM05D004101 ORTHO05D005221 2.2e-299 1032.3 924 58.3
ECA234G0584 Erigeron canadensis HOM05D004101 ORTHO05D005221 6.5e-299 1030.8 923 58.9
PSO017G3151 Papaver somniferum HOM05D004101 ORTHO05D005221 1.1e-298 1030.0 941 58.2
Gohir.D02G102700 Gossypium hirsutum HOM05D004101 ORTHO05D005221 2.5e-298 1028.9 859 62.2
ECA240G3381 Erigeron canadensis HOM05D004101 ORTHO05D005221 7.2e-298 1027.3 944 57.0
PSO017G5679 Papaver somniferum HOM05D004101 ORTHO05D005221 9.4e-298 1026.9 921 59.0
Haze_13953 Corylus avellana HOM05D004101 ORTHO05D005221 1.1e-295 1020.0 1046 54.7
PSO170G4509 Papaver somniferum HOM05D004101 ORTHO05D005221 2.2e-294 1015.8 920 58.8
PSO170G4791 Papaver somniferum HOM05D004101 ORTHO05D005221 4.1e-293 1011.5 921 57.3
Sabra19G0083800 Salix brachista HOM05D004101 ORTHO05D005221 2.0e-287 992.6 1069 52.9
Lsat_1_v5_gn_7_42860 Lactuca sativa HOM05D004101 ORTHO05D005221 2.0e-284 982.6 934 56.3
Atru.chr13.2489 Acer truncatum HOM05D004101 ORTHO05D005221 1.7e-283 979.5 931 56.6
Os08g0110700 Oryza sativa ssp. japonica HOM05D004101 ORTHO05D005221 2.0e-279 966.1 927 56.1
Hund26650 Selenicereus undatus HOM05D004101 ORTHO05D005221 9.7e-279 963.8 1173 48.9
Zm00001eb174090 Zea mays HOM05D004101 ORTHO05D005221 1.1e-277 960.3 952 54.2
AUR62022357 Chenopodium quinoa HOM05D004101 ORTHO05D005221 1.8e-277 959.5 959 54.7
FAN15G3699 Fragaria x ananassa HOM05D004101 ORTHO05D005221 1.8e-277 959.5 923 56.3
AUR62034351 Chenopodium quinoa HOM05D004101 ORTHO05D005221 5.3e-277 958.0 958 55.3
COL.COLO4_06914 Corchorus olitorius HOM05D004101 ORTHO05D005221 3.5e-276 955.3 852 60.3
unitig_8.g3682 Utricularia gibba HOM05D004101 ORTHO05D005221 1.0e-275 953.7 906 56.6
MELO3C008088.2 Cucumis melo HOM05D004101 ORTHO05D005221 6.5e-275 951.0 859 58.4
Atru.chr13.2501 Acer truncatum HOM05D004101 ORTHO05D005221 9.4e-274 947.2 806 60.2
Zm00001eb260480 Zea mays HOM05D004101 ORTHO05D005221 9.4e-274 947.2 942 54.6
HPP92_008596 Vanilla planifolia HOM05D004101 ORTHO05D005221 2.3e-272 942.6 1048 51.2
Sc26g0002190 Simmondsia chinensis HOM05D004101 ORTHO05D005221 1.4e-269 933.3 807 60.0
THA.LOC104812717 Tarenaya hassleriana HOM05D004101 ORTHO05D005221 4.1e-245 852.0 777 59.6
Mapoly0151s0040 Marchantia polymorpha HOM05D004101 ORTHO05D005221 1.5e-242 843.6 989 47.9
Ah.07g205660 Amaranthus hybridus HOM05D004101 ORTHO05D005221 1.4e-240 837.0 957 50.4
SMO200G0043 Selaginella moellendorffii HOM05D004101 ORTHO05D005221 5.4e-237 825.1 838 52.9
AagrBONN_evm.TU.Sc2ySwM_228.4088 Anthoceros agrestis HOM05D004101 ORTHO05D005221 6.2e-233 811.6 860 50.2
BcaB04g18153 Brassica carinata HOM05D004101 ORTHO05D005221 6.2e-233 811.6 753 56.8
Gohir.D05G255640 Gossypium hirsutum HOM05D004101 ORTHO05D005221 7.1e-229 798.1 688 61.8
Nitab4.5_0009427g0010 Nicotiana tabacum HOM05D004101 ORTHO05D005221 1.3e-227 793.9 713 58.8
Pp3c3_10170 Physcomitrium patens HOM05D004101 ORTHO05D005221 1.1e-224 784.3 1063 42.6
Migut.N00698 Erythranthe guttata HOM05D004101 ORTHO05D005221 7.1e-197 691.8 421 80.8
TPR.G31924 Trifolium pratense HOM05D004101 ORTHO05D005221 5.8e-191 672.2 634 54.7
A09p34710 Brassica napus HOM05D004101 ORTHO05D005221 4.5e-183 646.0 628 57.0
CDE02G0702 Ceratophyllum demersum HOM05D004101 ORTHO05D005221 5.0e-182 642.5 670 56.0
Rhsim08G0116000 Rhododendron simsii HOM05D004101 ORTHO05D005221 2.7e-172 610.1 755 47.9
vmacro17837 Vaccinium macrocarpon HOM05D004101 ORTHO05D005221 3.5e-159 566.6 405 70.1
vmacro14428 Vaccinium macrocarpon HOM05D004101 ORTHO05D005221 3.4e-154 550.1 359 74.9
Lj2A387T50 Lonicera japonica HOM05D004101 ORTHO05D005221 1.3e-150 538.1 389 70.4
Cpa.g.sc24.82 Carica papaya HOM05D004101 ORTHO05D005221 7.0e-136 489.2 477 56.6
Migut.N00699 Erythranthe guttata HOM05D004101 ORTHO05D005221 1.2e-130 471.9 324 70.4
Lj2A387G43 Lonicera japonica HOM05D004101 ORTHO05D005221 1.1e-128 465.3 572 49.0
vmacro17836 Vaccinium macrocarpon HOM05D004101 ORTHO05D005221 1.6e-124 451.4 711 41.4
Oeu006618.1 Olea europaea HOM05D004101 ORTHO05D005221 3.4e-122 443.7 295 74.6
HPP92_008553 Vanilla planifolia HOM05D004101 ORTHO05D005221 6.2e-116 422.9 295 70.8
Lsat_1_v5_gn_5_98501 Lactuca sativa HOM05D004101 ORTHO05D007752 8.9e-115 419.1 293 71.0
HPP92_008552 Vanilla planifolia HOM05D004101 ORTHO05D005221 1.7e-113 414.8 563 45.3
Gohir.D05G255660 Gossypium hirsutum HOM05D004101 ORTHO05D005221 5.4e-104 383.3 474 46.8
CBR_g19663 Chara braunii HOM05D004101 ORTHO05D005221 6.9e-99 366.3 324 56.5
Cpa.g.sc24.85 Carica papaya HOM05D004101 ORTHO05D005221 1.4e-83 315.5 220 71.4
BcaB04g18154 Brassica carinata HOM05D004101 ORTHO05D005221 1.1e-56 226.1 156 71.8
A09p34730 Brassica napus HOM05D004101 ORTHO05D005221 1.2e-47 196.1 132 72.0
vmacro14430 Vaccinium macrocarpon HOM05D004101 ORTHO05D005221 6.1e-47 193.7 148 59.5
CDE02G4445 Ceratophyllum demersum HOM05D004101 ORTHO05D005221 1.1e-43 183.0 210 46.7
QL93p1879_0034 Quercus lobata HOM05D004101 ORTHO05D005221 9.4e-40 169.9 132 62.9
Aqoxy2G00645 Aquilegia oxysepala HOM05D004101 ORTHO05D005221 1.1e-32 146.4 125 56.8
SEGI_28351 Sequoiadendron giganteum HOM05D004101 ORTHO05D005221 2.5e-32 145.2 94 72.3
vmacro14429 Vaccinium macrocarpon HOM05D004101 ORTHO05D005221 2.8e-28 131.7 286 35.7
SEGI_18218 Sequoiadendron giganteum HOM05D004101 ORTHO05D005221 1.2e-26 126.3 76 77.6
PSO017G1167 Papaver somniferum HOM05D004101 ORTHO05D005221 1.6e-26 125.9 114 56.1
SEGI_38945 Sequoiadendron giganteum HOM05D004101 ORTHO05D005221 3.7e-20 104.8 86 59.3
Cpa.g.sc24.79 Carica papaya HOM05D004101 ORTHO05D005221 3.9e-17 94.7 66 66.7
Medtr5g080490 Medicago truncatula HOM05D004101 ORTHO05D005221 8.0e-15 87.0 61 65.6
BolC1t03898H Brassica oleracea HOM05D010251 ORTHO05D005221 5.2e-14 84.3 160 34.4
SHI03798 Sapria himalayana HOM05D004101 ORTHO05D005221 1.2e-13 83.2 90 50.0
COL.COLO4_06915 Corchorus olitorius HOM05D004101 ORTHO05D005221 7.5e-13 80.5 47 76.6
Pp3c3_10160 Physcomitrium patens HOM05D004101 ORTHO05D005221 5.4e-11 74.3 72 44.4
SMO200G0098 Selaginella moellendorffii HOM05D004101 ORTHO05D037556 3.5e-10 71.6 82 48.8
Os07g0406600 Oryza sativa ssp. japonica HOM05D004101 ORTHO05D005221 3.3e-08 65.1 50 56.0
CDE08G1083 Ceratophyllum demersum HOM05D004101 ORTHO05D005221 5.6e-08 64.3 71 49.3
Lsat_1_v5_gn_5_153621 Lactuca sativa HOM05D004101 ORTHO05D005221 1.6e-07 62.8 68 50.0
SMO200G0135 Selaginella moellendorffii HOM05D004101 ORTHO05D037556 4.7e-07 61.2 62 51.6
BolC2t10203H Brassica oleracea HOM05D004101 ORTHO05D027158 2.3e-06 58.9 52 53.8
BolC2t10210H Brassica oleracea HOM05D004101 ORTHO05D027158 2.3e-06 58.9 52 53.8


User provided reference genes

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