Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Migut.D00774 Erythranthe guttata HOM05D007112 ORTHO05D008930 3.9e-136 488.0 231 100.0
SalBow3G4154 Salvia bowleyana HOM05D007112 ORTHO05D008930 8.2e-94 347.4 230 70.0
MSTRG.18505 Avicennia marina HOM05D007112 ORTHO05D008930 5.9e-92 341.3 233 70.0
Oeu013523.1 Olea europaea HOM05D007112 ORTHO05D008930 1.4e-77 293.5 227 63.4
Rhsim01G0247600 Rhododendron simsii HOM05D007112 ORTHO05D008930 2.1e-73 279.6 224 60.3
Lj2A1111T23 Lonicera japonica HOM05D007112 ORTHO05D008930 6.8e-72 274.6 229 59.0
Hma1.2p1_1043F.1_g251280 Hydrangea macrophylla HOM05D007112 ORTHO05D008930 2.0e-71 273.1 227 57.7
Cc01_g15870 Coffea canephora HOM05D007112 ORTHO05D008930 1.9e-69 266.5 224 56.7
Dinv28792 Davidia involucrata HOM05D007112 ORTHO05D008930 7.0e-69 264.6 225 55.6
Peaxi162Scf02239g00022 Petunia axillaris HOM05D007112 ORTHO05D008930 2.0e-68 263.1 219 54.3
MD05G1153700 Malus domestica HOM05D007112 ORTHO05D008930 2.7e-68 262.7 228 54.4
Actinidia23803 Actinidia chinensis HOM05D007112 ORTHO05D008930 3.5e-68 262.3 223 56.5
Solyc09g047840.3 Solanum lycopersicum HOM05D007112 ORTHO05D008930 4.6e-68 261.9 228 53.1
Nitab4.5_0000038g0350 Nicotiana tabacum HOM05D007112 ORTHO05D008930 1.7e-67 260.0 222 54.1
Sopen09g015950 Solanum pennellii HOM05D007112 ORTHO05D008930 3.0e-67 259.2 227 52.9
Atru.chr6.3529 Acer truncatum HOM05D007112 ORTHO05D008930 3.9e-67 258.8 223 54.3
Nitab4.5_0010469g0020 Nicotiana tabacum HOM05D007112 ORTHO05D008930 1.9e-66 256.5 223 52.5
PGSC0003DMG400021909 Solanum tuberosum HOM05D007112 ORTHO05D008930 2.5e-66 256.1 228 52.6
unitig_60.g25572 Utricularia gibba HOM05D007112 ORTHO05D008930 2.5e-66 256.1 222 56.3
LjContig00389g0002281 Lotus japonicus HOM05D007112 ORTHO05D008930 3.3e-66 255.8 223 54.7
Prupe.8G187100 Prunus persica HOM05D007112 ORTHO05D008930 2.1e-65 253.1 231 55.0
TAR362G0557 Trochodendron aralioides HOM05D007112 ORTHO05D008930 4.7e-65 251.9 226 53.1
Duzib133G1446 Durio zibethinus HOM05D007112 ORTHO05D008930 8.0e-65 251.1 223 50.7
RcHm_v2.0_Chr6g0282211 Rosa chinensis HOM05D007112 ORTHO05D008930 8.0e-65 251.1 223 55.6
Lalb_Chr07g0194661 Lupinus albus HOM05D007112 ORTHO05D008930 1.4e-64 250.4 227 53.7
vmacro14688 Vaccinium macrocarpon HOM05D007112 ORTHO05D008930 1.4e-64 250.4 228 56.1
arahy.Tifrunner.gnm1.ann1.T2R7SH Arachis hypogaea HOM05D007112 ORTHO05D008930 6.8e-64 248.1 222 53.2
CSS0005940 Camellia sinensis var. sinensis HOM05D007112 ORTHO05D008930 1.2e-63 247.3 223 55.6
HanXRQChr08g0231791 Helianthus annuus HOM05D007112 ORTHO05D008930 1.5e-63 246.9 220 54.1
FAN15G3611 Fragaria x ananassa HOM05D007112 ORTHO05D008930 3.4e-63 245.7 223 53.8
Ciclev10016325m.g Citrus clementina HOM05D007112 ORTHO05D008930 7.5e-63 244.6 223 52.9
FvH4_2g17490 Fragaria vesca HOM05D007112 ORTHO05D008930 7.5e-63 244.6 223 54.3
CsaV3_7G026720 Cucumis sativus L. HOM05D007112 ORTHO05D008930 9.8e-63 244.2 227 51.5
Cfa017735 Carpinus fangiana HOM05D007112 ORTHO05D008930 1.7e-62 243.4 223 51.6
Gohir.A07G195600 Gossypium hirsutum HOM05D007112 ORTHO05D008930 1.7e-62 243.4 225 51.6
GSVIVG01001529001 Vitis vinifera HOM05D007112 ORTHO05D008930 1.7e-62 243.4 224 50.9
VMungo0331G1777 Vigna mungo HOM05D007112 ORTHO05D008930 2.9e-62 242.7 222 52.7
Gorai.001G227200 Gossypium raimondii HOM05D007112 ORTHO05D008930 4.9e-62 241.9 223 52.0
CANSAT01G1474 Cannabis sativa HOM05D007112 ORTHO05D008930 8.3e-62 241.1 236 50.8
Sabra14G0134200 Salix brachista HOM05D007112 ORTHO05D008930 1.1e-61 240.7 226 51.8
Glyma.03G097000 Glycine max HOM05D007112 ORTHO05D008930 1.4e-61 240.4 224 50.4
Gohir.D07G202200 Gossypium hirsutum HOM05D007112 ORTHO05D008930 3.2e-61 239.2 223 51.6
TWI36G0064 Tripterygium wilfordii HOM05D007112 ORTHO05D008930 3.2e-61 239.2 228 50.4
Phvul.010G036300 Phaseolus vulgaris HOM05D007112 ORTHO05D008930 4.1e-61 238.8 222 50.5
ClCG09G008370 Citrullus lanatus HOM05D007112 ORTHO05D008930 5.4e-61 238.4 227 51.1
CARHR082180 Cardamine hirsuta HOM05D007112 ORTHO05D008930 1.2e-60 237.3 223 52.9
Sed0011312 Sechium edule HOM05D007112 ORTHO05D008930 1.2e-60 237.3 222 50.5
COL.COLO4_34270 Corchorus olitorius HOM05D007112 ORTHO05D008930 4.6e-60 235.3 224 51.3
THA.LOC104819012 Tarenaya hassleriana HOM05D007112 ORTHO05D008930 4.6e-60 235.3 224 51.8
Carub.0003s0707 Capsella rubella HOM05D007112 ORTHO05D008930 1.0e-59 234.2 221 53.4
ECA247G2139 Erigeron canadensis HOM05D000092 ORTHO05D008930 1.7e-59 233.4 223 52.5
TPR.G17379 Trifolium pratense HOM05D007112 ORTHO05D008930 1.7e-59 233.4 222 54.1
Lsat_1_v5_gn_9_16901 Lactuca sativa HOM05D007112 ORTHO05D008930 2.3e-59 233.0 220 52.7
Ca_23159_v3 Cicer arietinum L. HOM05D007112 ORTHO05D008930 5.1e-59 231.9 235 50.2
PGR044G1116 Punica granatum HOM05D007112 ORTHO05D008930 5.1e-59 231.9 226 50.4
Glyma.07G124300 Glycine max HOM05D007112 ORTHO05D008930 8.6e-59 231.1 223 49.8
Eucgr.K02360 Eucalyptus grandis HOM05D007112 ORTHO05D008930 3.3e-58 229.2 222 52.3
Aqoxy5G04050 Aquilegia oxysepala HOM05D007112 ORTHO05D008930 5.6e-58 228.4 220 50.9
Thhalv10022158m.g Eutrema salsugineum HOM05D007112 ORTHO05D008930 5.6e-58 228.4 221 50.2
Medtr8g010140 Medicago truncatula HOM05D007112 ORTHO05D008930 5.6e-58 228.4 225 52.0
Thecc.01G207600 Theobroma cacao HOM05D007112 ORTHO05D008930 7.3e-58 228.0 226 49.1
Aa31LG5G18060 Aethionema arabicum HOM05D007112 ORTHO05D008930 1.6e-57 226.9 224 50.4
Hund02806 Selenicereus undatus HOM05D007112 ORTHO05D008930 4.7e-57 225.3 226 50.0
AUR62028645 Chenopodium quinoa HOM05D007112 ORTHO05D008930 8.1e-57 224.6 236 49.2
Psat4g208280 Pisum sativum HOM05D007112 ORTHO05D008930 5.2e-56 221.9 223 50.2
AT3G07525 Arabidopsis thaliana HOM05D007112 ORTHO05D008930 6.8e-56 221.5 222 50.0
arahy.Tifrunner.gnm1.ann1.X2Q8CL Arachis hypogaea HOM05D007112 ORTHO05D008930 6.8e-56 221.5 222 49.5
BraA05t22800Z Brassica rapa HOM05D007112 ORTHO05D008930 6.8e-56 221.5 220 50.9
PSO675G4719 Papaver somniferum HOM05D007112 ORTHO05D008930 1.2e-55 220.7 250 45.6
QL05p089159 Quercus lobata HOM05D007112 ORTHO05D008930 1.2e-55 220.7 223 49.8
A05p40690 Brassica napus HOM05D007112 ORTHO05D008930 2.0e-55 219.9 220 50.5
FAN24G0137 Fragaria x ananassa HOM05D007112 ORTHO05D008930 2.6e-55 219.5 225 49.8
Sp3g06430 Schrenkiella parvula HOM05D007112 ORTHO05D008930 2.6e-55 219.5 221 49.8
AUR62008068 Chenopodium quinoa HOM05D007112 ORTHO05D008930 1.3e-54 217.2 227 48.9
BcaC05g29544 Brassica carinata HOM05D007112 ORTHO05D008930 2.9e-54 216.1 220 50.0
Hma1.2p1_1043F.1_g251290 Hydrangea macrophylla HOM05D007112 ORTHO05D008930 1.1e-53 214.2 138 66.7
BolC5t34634H Brassica oleracea HOM05D007112 ORTHO05D008930 4.1e-53 212.2 225 49.3
PSO732G0401 Papaver somniferum HOM05D007112 ORTHO05D008930 7.1e-53 211.5 245 44.1
Sc24g0003360 Simmondsia chinensis HOM05D007112 ORTHO05D008930 2.7e-52 209.5 231 47.2
C05p59800 Brassica napus HOM05D007112 ORTHO05D008930 3.9e-51 205.7 220 48.2
Nn7g37436 Nelumbo nucifera HOM05D007112 ORTHO05D008930 1.2e-49 200.7 166 57.8
ATR0752G208 Amborella trichopoda HOM05D007112 ORTHO05D008930 2.1e-49 199.9 225 45.3
Manes.13G056200 Manihot esculenta HOM05D007112 ORTHO05D008930 6.2e-49 198.4 169 54.4
CiPaw.14G038400 Carya illinoinensis HOM05D007112 ORTHO05D008930 2.4e-48 196.4 188 49.5
SHI30551 Sapria himalayana HOM05D007112 ORTHO05D008930 5.2e-48 195.3 220 43.2
MELO3C021125.2 Cucumis melo HOM05D007112 ORTHO05D008930 2.1e-44 183.3 138 59.4
HPP92_001291 Vanilla planifolia HOM05D007112 ORTHO05D008930 4.3e-42 175.6 216 42.6
Ah.11g050810 Amaranthus hybridus HOM05D007112 ORTHO05D008930 9.6e-42 174.5 232 40.1
Zm00001eb425740 Zea mays HOM05D007112 ORTHO05D008930 3.1e-40 169.5 223 40.8
CAN.G50.11 Capsicum annuum HOM05D007112 ORTHO05D008930 3.4e-39 166.0 117 59.0
MBI10_g35388_MAGBIO Magnolia biondii HOM05D007112 ORTHO05D008930 1.3e-38 164.1 260 37.7
SGA_v2.0_scaffold29G12307 Striga asiatica HOM05D007112 ORTHO05D008930 4.2e-37 159.1 152 56.6
CDE05G1497 Ceratophyllum demersum HOM05D007112 ORTHO05D008930 3.5e-36 156.0 147 48.3
DCAR_018609 Daucus carota HOM05D007112 ORTHO05D008930 4.6e-36 155.6 163 47.9
Os04g0497350 Oryza sativa ssp. japonica HOM05D007112 ORTHO05D008930 1.5e-34 150.6 218 38.1
HanXRQChr03g0082541 Helianthus annuus HOM05D007112 ORTHO05D008930 4.3e-34 149.1 109 62.4
Pp3c26_2050 Physcomitrium patens HOM05D007112 ORTHO05D008930 5.8e-31 138.7 187 37.4
Mapoly0002s0314 Marchantia polymorpha HOM05D007112 ORTHO05D008930 1.1e-29 134.4 188 37.2
AagrBONN_evm.TU.Sc2ySwM_344.2017 Anthoceros agrestis HOM05D007112 ORTHO05D008930 2.7e-28 129.8 192 37.5
Cpa.g.sc8.40 Carica papaya HOM05D007112 ORTHO05D008930 1.6e-25 120.6 125 47.2
Haze_03375 Corylus avellana HOM05D007112 ORTHO05D008930 1.6e-25 120.6 151 39.7
MD10G1148000 Malus domestica HOM05D007112 ORTHO05D008930 2.0e-23 113.6 124 48.4
EL10Ac5g10586 Beta vulgaris HOM05D007112 ORTHO05D008930 8.7e-19 98.2 84 52.4
EL10Ac5g10588 Beta vulgaris HOM05D007112 ORTHO05D008930 1.8e-16 90.5 62 64.5
SMO141G0021 Selaginella moellendorffii HOM05D007112 ORTHO05D008930 3.4e-15 86.3 230 27.8
CDE05G2169 Ceratophyllum demersum HOM05D007112 ORTHO05D008930 6.5e-14 82.0 131 36.6
Haze_03371 Corylus avellana HOM05D007112 ORTHO05D008930 9.7e-10 68.2 98 40.8
Nn7g37443 Nelumbo nucifera HOM05D007112 ORTHO05D008930 3.7e-09 66.2 60 50.0
Haze_03374 Corylus avellana HOM05D000072 ORTHO05D000026 2.4e-08 63.5 108 38.0
C04p34930 Brassica napus HOM05D007112 ORTHO05D008930 9.0e-08 61.6 107 36.4
TWI18G1453 Tripterygium wilfordii HOM05D007112 ORTHO05D008930 9.0e-08 61.6 98 34.7
BolC4t25047H Brassica oleracea HOM05D007112 ORTHO05D027530 1.7e-06 57.4 105 34.3


User provided reference genes

Program Settings