Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Migut.D00766 Erythranthe guttata HOM05D005604 ORTHO05D006745 7.9e-302 1039.6 525 100.0
MSTRG.18511 Avicennia marina HOM05D005604 ORTHO05D006745 5.2e-229 797.7 548 76.8
Dinv19175 Davidia involucrata HOM05D005604 ORTHO05D006745 1.3e-211 740.0 554 72.9
Dinv12653 Davidia involucrata HOM05D005604 ORTHO05D006745 2.2e-211 739.2 556 73.2
CSS0000075 Camellia sinensis var. sinensis HOM05D005604 ORTHO05D006745 3.3e-207 725.3 558 71.7
Hma1.2p1_0226F.1_g095420 Hydrangea macrophylla HOM05D005604 ORTHO05D006745 4.0e-205 718.4 539 70.7
Actinidia39432 Actinidia chinensis HOM05D005604 ORTHO05D006745 1.3e-203 713.4 561 70.6
CiPaw.01G050300 Carya illinoinensis HOM05D005604 ORTHO05D006745 1.7e-203 713.0 556 69.1
CAN.G874.4 Capsicum annuum HOM05D005604 ORTHO05D006745 1.1e-199 700.3 543 69.2
QL09p051278 Quercus lobata HOM05D005604 ORTHO05D006745 1.1e-199 700.3 550 69.1
Cpa.g.sc43.114 Carica papaya HOM05D005604 ORTHO05D006745 2.5e-199 699.1 543 70.3
Prupe.8G199200 Prunus persica HOM05D005604 ORTHO05D006745 4.8e-198 694.9 554 69.9
Sopen06g034740 Solanum pennellii HOM05D005604 ORTHO05D006745 4.8e-198 694.9 542 68.5
Potri.002G245700 Populus trichocarpa HOM05D005604 ORTHO05D006745 1.1e-197 693.7 553 67.8
PGSC0003DMG400020164 Solanum tuberosum HOM05D005604 ORTHO05D006745 1.8e-197 693.0 542 68.5
Gorai.001G231700 Gossypium raimondii HOM05D005604 ORTHO05D006745 3.1e-197 692.2 552 68.1
Nitab4.5_0009005g0020 Nicotiana tabacum HOM05D005604 ORTHO05D006745 3.1e-197 692.2 535 69.3
Gohir.D07G205700 Gossypium hirsutum HOM05D005604 ORTHO05D006745 5.3e-197 691.4 552 68.1
COL.COLO4_15621 Corchorus olitorius HOM05D005604 ORTHO05D006745 9.0e-197 690.6 559 68.5
Thecc.01G220400 Theobroma cacao HOM05D005604 ORTHO05D006745 2.0e-196 689.5 553 69.3
GSVIVG01003930001 Vitis vinifera HOM05D005604 ORTHO05D006745 3.4e-196 688.7 554 68.2
Solyc06g083370.3 Solanum lycopersicum HOM05D005604 ORTHO05D006745 7.6e-196 687.6 542 67.9
Atru.chr6.1423 Acer truncatum HOM05D005604 ORTHO05D006745 3.8e-195 685.3 564 66.5
Gohir.A07G199300 Gossypium hirsutum HOM05D005604 ORTHO05D006745 6.5e-195 684.5 553 67.5
RcHm_v2.0_Chr6g0284121 Rosa chinensis HOM05D005604 ORTHO05D006745 2.5e-194 682.6 555 68.5
Duzib138G1747 Durio zibethinus HOM05D005604 ORTHO05D006745 3.2e-194 682.2 553 68.2
Duzib133G0023 Durio zibethinus HOM05D005604 ORTHO05D006745 4.2e-194 681.8 551 68.6
Ciclev10019544m.g Citrus clementina HOM05D005604 ORTHO05D006745 3.5e-193 678.7 560 67.3
CiPaw.02G023400 Carya illinoinensis HOM05D005604 ORTHO05D006745 5.1e-192 674.9 552 68.3
FvH4_2g18560 Fragaria vesca HOM05D005604 ORTHO05D006745 6.7e-192 674.5 554 68.1
FAN24G1841 Fragaria x ananassa HOM05D005604 ORTHO05D006745 1.1e-191 673.7 554 67.5
PGSC0003DMG400027951 Solanum tuberosum HOM05D005604 ORTHO05D006745 1.1e-191 673.7 550 68.2
vmacro02782 Vaccinium macrocarpon HOM05D005604 ORTHO05D006745 5.7e-191 671.4 608 62.7
Nitab4.5_0003020g0080 Nicotiana tabacum HOM05D005604 ORTHO05D006745 9.7e-191 670.6 554 66.6
Rhsim13G0047500 Rhododendron simsii HOM05D005604 ORTHO05D006745 2.8e-190 669.1 562 67.6
CANSAT01G1141 Cannabis sativa HOM05D005604 ORTHO05D006745 6.3e-190 667.9 561 66.0
FAN15G1583 Fragaria x ananassa HOM05D005604 ORTHO05D006745 1.8e-189 666.4 554 67.7
FAN27G1924 Fragaria x ananassa HOM05D005604 ORTHO05D006745 2.4e-189 666.0 555 66.7
Actinidia30055 Actinidia chinensis HOM05D005604 ORTHO05D006745 9.0e-189 664.1 521 70.2
MD10G1160100 Malus domestica HOM05D005604 ORTHO05D006745 9.0e-189 664.1 553 67.1
Solyc09g059470.4 Solanum lycopersicum HOM05D005604 ORTHO05D006745 9.0e-189 664.1 551 67.2
MD05G1171800 Malus domestica HOM05D005604 ORTHO05D006745 2.0e-188 662.9 554 66.8
Sopen09g022640 Solanum pennellii HOM05D005604 ORTHO05D006745 2.0e-188 662.9 551 66.8
Eucgr.K02139 Eucalyptus grandis HOM05D005604 ORTHO05D006745 7.7e-188 661.0 551 67.2
Lj1A89T69 Lonicera japonica HOM05D005604 ORTHO05D006745 2.2e-187 659.4 602 63.3
Haze_15255 Corylus avellana HOM05D005604 ORTHO05D006745 7.2e-186 654.4 634 60.3
CsaV3_7G026370 Cucumis sativus L. HOM05D005604 ORTHO05D006745 9.4e-186 654.1 558 66.8
DCAR_004740 Daucus carota HOM05D005604 ORTHO05D006745 9.4e-186 654.1 538 66.4
TWI36G0921 Tripterygium wilfordii HOM05D005604 ORTHO05D006745 1.6e-185 653.3 563 66.4
ClCG09G008600 Citrullus lanatus HOM05D005604 ORTHO05D006745 2.3e-184 649.4 558 66.5
PSO063G0087 Papaver somniferum HOM05D005604 ORTHO05D006745 2.3e-184 649.4 554 64.1
HanXRQChr04g0108051 Helianthus annuus HOM05D005604 ORTHO05D006745 3.9e-184 648.7 542 67.3
VMungo1383G0872 Vigna mungo HOM05D005604 ORTHO05D006745 3.9e-184 648.7 549 65.8
TAR633G2144 Trochodendron aralioides HOM05D005604 ORTHO05D006745 7.4e-183 644.4 559 64.8
TAR362G0631 Trochodendron aralioides HOM05D005604 ORTHO05D006745 4.8e-182 641.7 561 64.9
PSO017G3308 Papaver somniferum HOM05D005604 ORTHO05D006745 6.3e-182 641.3 554 63.2
Psat3g148680 Pisum sativum HOM05D005604 ORTHO05D006745 6.3e-182 641.3 548 66.4
MELO3C021083.2 Cucumis melo HOM05D005604 ORTHO05D006745 1.4e-181 640.2 557 65.9
TWI18G0325 Tripterygium wilfordii HOM05D005604 ORTHO05D006745 3.1e-181 639.0 563 64.8
Glyma.18G167400 Glycine max HOM05D005604 ORTHO05D006745 6.9e-181 637.9 551 66.4
Cc01_g16720 Coffea canephora HOM05D005604 ORTHO05D006745 5.9e-180 634.8 549 64.7
Glyma.08G349100 Glycine max HOM05D005604 ORTHO05D006745 8.5e-179 630.9 555 65.2
Lj1g0022594 Lotus japonicus HOM05D005604 ORTHO05D006745 4.2e-178 628.6 538 66.9
Sed0019682 Sechium edule HOM05D005604 ORTHO05D006745 4.2e-178 628.6 559 64.2
AUR62001131 Chenopodium quinoa HOM05D005604 ORTHO05D006745 3.0e-176 622.5 581 60.9
DCAR_012669 Daucus carota HOM05D005604 ORTHO05D006745 1.1e-175 620.5 556 62.6
arahy.Tifrunner.gnm1.ann1.S4VI32 Arachis hypogaea HOM05D005604 ORTHO05D006745 1.5e-175 620.2 543 64.5
Medtr7g056243 Medicago truncatula HOM05D005604 ORTHO05D006745 2.0e-175 619.8 543 64.6
Phvul.008G130900 Phaseolus vulgaris HOM05D005604 ORTHO05D006745 2.6e-175 619.4 537 65.0
arahy.Tifrunner.gnm1.ann1.6511ZK Arachis hypogaea HOM05D005604 ORTHO05D006745 7.4e-175 617.8 549 63.9
AUR62016550 Chenopodium quinoa HOM05D005604 ORTHO05D006745 7.4e-175 617.8 581 60.4
Ah.15g093490 Amaranthus hybridus HOM05D005604 ORTHO05D006745 4.8e-174 615.1 590 59.5
MBI07_g18990_MAGBIO Magnolia biondii HOM05D005604 ORTHO05D006745 4.8e-174 615.1 555 63.2
ECA236G4946 Erigeron canadensis HOM05D005604 ORTHO05D006745 9.1e-173 610.9 509 66.6
Nitab4.5_0003317g0030 Nicotiana tabacum HOM05D005604 ORTHO05D006745 1.0e-171 607.4 691 54.1
Lalb_Chr13g0291101 Lupinus albus HOM05D005604 ORTHO05D006745 1.9e-170 603.2 558 62.7
Nitab4.5_0000045g0530 Nicotiana tabacum HOM05D005604 ORTHO05D006745 6.1e-169 598.2 690 52.9
THA.LOC104822492 Tarenaya hassleriana HOM05D005604 ORTHO05D006745 1.0e-168 597.4 558 62.4
unitig_60.g25697 Utricularia gibba HOM05D005604 ORTHO05D006745 2.6e-167 592.8 543 61.7
Lsat_1_v5_gn_9_15140 Lactuca sativa HOM05D005604 ORTHO05D006745 7.5e-167 591.3 544 62.3
Lsat_1_v5_gn_8_89380 Lactuca sativa HOM05D005604 ORTHO05D006745 1.7e-166 590.1 541 62.1
unitig_0.g223 Utricularia gibba HOM05D005604 ORTHO05D006745 5.3e-165 585.1 536 63.6
PGR044G1204 Punica granatum HOM05D005604 ORTHO05D006745 2.7e-164 582.8 571 60.8
Sabra02G0187000 Salix brachista HOM05D005604 ORTHO05D006745 7.7e-164 581.3 466 68.0
EL10Ac7g17895 Beta vulgaris HOM05D005604 ORTHO05D006745 1.2e-161 573.9 586 57.2
Thhalv10020454m.g Eutrema salsugineum HOM05D005604 ORTHO05D006745 2.7e-161 572.8 558 59.7
Peaxi162Scf01312g00047 Petunia axillaris HOM05D005604 ORTHO05D006745 8.0e-161 571.2 466 67.0
Carub.0003s0673 Capsella rubella HOM05D005604 ORTHO05D006745 5.2e-160 568.5 556 60.6
THA.LOC104802659 Tarenaya hassleriana HOM05D005604 ORTHO05D006745 3.4e-159 565.8 577 59.8
Aa31LG5G17790 Aethionema arabicum HOM05D005604 ORTHO05D006745 4.4e-159 565.5 557 59.4
CARHR081860 Cardamine hirsuta HOM05D005604 ORTHO05D006745 4.4e-159 565.5 563 59.7
Peaxi162Scf00068g02416 Petunia axillaris HOM05D005604 ORTHO05D006745 1.3e-158 563.9 642 54.5
Aqoxy2G03983 Aquilegia oxysepala HOM05D005604 ORTHO05D006745 4.8e-158 562.0 566 58.7
AL3G18480 Arabidopsis lyrata HOM05D005604 ORTHO05D006745 8.3e-158 561.2 557 59.1
AT3G07210 Arabidopsis thaliana HOM05D005604 ORTHO05D006745 1.8e-157 560.1 558 59.5
Sp3g06160 Schrenkiella parvula HOM05D005604 ORTHO05D006745 3.5e-156 555.8 559 58.9
BcaC05g29746 Brassica carinata HOM05D005604 ORTHO05D006745 1.0e-155 554.3 549 58.8
HanXRQChr10g0279511 Helianthus annuus HOM05D005604 ORTHO05D006745 7.2e-154 548.1 531 59.9
ECA247G0587 Erigeron canadensis HOM05D005604 ORTHO05D006745 3.7e-150 535.8 511 60.5
C05p60150 Brassica napus HOM05D005604 ORTHO05D006745 6.6e-147 525.0 557 57.5
BolC5t34666H Brassica oleracea HOM05D005604 ORTHO05D006745 6.6e-147 525.0 557 57.5
BcaC05g29850 Brassica carinata HOM05D005604 ORTHO05D006745 2.1e-145 520.0 557 57.1
Manes.13G049200 Manihot esculenta HOM05D005604 ORTHO05D006745 4.0e-144 515.8 453 64.7
A05p41000 Brassica napus HOM05D005604 ORTHO05D006745 6.8e-144 515.0 555 56.2
BraA05t22827Z Brassica rapa HOM05D005604 ORTHO05D006745 2.0e-143 513.5 555 56.2
ATR0561G172 Amborella trichopoda HOM05D005604 ORTHO05D006745 1.5e-135 487.3 561 52.8
Zm00001eb143450 Zea mays HOM05D005604 ORTHO05D006745 8.6e-131 471.5 556 52.0
Hund05575 Selenicereus undatus HOM05D005604 ORTHO05D006745 2.8e-129 466.5 580 49.0
HPP92_011784 Vanilla planifolia HOM05D005604 ORTHO05D006745 1.4e-128 464.2 538 53.2
Nn1g07990 Nelumbo nucifera HOM05D005604 ORTHO05D006745 3.5e-124 449.5 426 60.3
DCAR_004736 Daucus carota HOM05D005604 ORTHO05D006745 3.0e-123 446.4 418 62.7
Os01g0917200 Oryza sativa ssp. japonica HOM05D005604 ORTHO05D006745 3.9e-123 446.0 557 50.4
Sc05g0001960 Simmondsia chinensis HOM05D005604 ORTHO05D006745 1.1e-120 438.0 389 62.0
SGA_v2.0_scaffold158G37516 Striga asiatica HOM05D005604 ORTHO05D006745 2.0e-119 433.7 400 61.8
CDE05G2031 Ceratophyllum demersum HOM05D005604 ORTHO05D006745 1.3e-118 431.0 539 48.4
CAN.G1432.2 Capsicum annuum HOM05D005604 ORTHO05D006745 6.7e-91 339.0 480 45.8
Zm00001eb175070 Zea mays HOM05D005604 ORTHO05D006745 1.9e-90 337.4 547 42.2
Os08g0528800 Oryza sativa ssp. japonica HOM05D005604 ORTHO05D006745 4.3e-90 336.3 544 41.9
TPR.G6488 Trifolium pratense HOM05D005604 ORTHO05D006745 2.1e-76 290.8 314 56.4
CDE05G1628 Ceratophyllum demersum HOM05D005604 ORTHO05D006745 4.2e-69 266.5 345 47.5
SEGI_00167 Sequoiadendron giganteum HOM05D005604 ORTHO05D006745 5.7e-58 229.6 260 46.9
DCAR_026186 Daucus carota HOM05D005604 ORTHO05D006745 2.8e-49 200.7 464 36.4
ECA247G2712 Erigeron canadensis HOM05D005604 ORTHO05D006745 2.9e-38 164.1 156 60.3
Oeu057862.1 Olea europaea HOM05D005604 ORTHO05D006745 4.9e-33 146.7 84 83.3
Manes.12G047141 Manihot esculenta HOM05D005604 ORTHO05D006745 4.6e-23 113.6 86 68.6
TPR.G6487 Trifolium pratense HOM05D005604 ORTHO05D006745 1.1e-21 109.0 84 67.9
Gohir.A05G304001 Gossypium hirsutum HOM05D005604 ORTHO05D006745 4.3e-21 107.1 109 56.0
Hma1.2p1_1324F.1_g275630 Hydrangea macrophylla HOM05D005604 ORTHO05D006745 4.7e-20 103.6 66 74.2
SMO117G0236 Selaginella moellendorffii HOM05D005604 ORTHO05D006745 3.4e-18 97.4 176 31.2
AagrBONN_evm.TU.Sc2ySwM_362.1199 Anthoceros agrestis HOM05D005604 ORTHO05D006745 9.8e-18 95.9 233 31.3
Mapoly0029s0037 Marchantia polymorpha HOM05D005604 ORTHO05D006745 2.4e-16 91.3 219 32.0
AagrBONN_evm.TU.Sc2ySwM_117.906 Anthoceros agrestis HOM05D005604 ORTHO05D006745 9.2e-16 89.4 236 28.4
AagrBONN_evm.TU.Sc2ySwM_368.1401 Anthoceros agrestis HOM05D005604 ORTHO05D006745 6.0e-15 86.7 217 27.6
QL09p051399 Quercus lobata HOM05D005604 ORTHO05D006745 2.2e-09 68.2 61 67.2


User provided reference genes

Program Settings