Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Migut.D00726 Erythranthe guttata HOM05D007255 ORTHO05D009052 7.8e-135 483.8 244 100.0
MSTRG.18490 Avicennia marina HOM05D007255 ORTHO05D009052 1.2e-103 380.2 245 80.0
SalBow6G0858 Salvia bowleyana HOM05D007255 ORTHO05D009052 1.1e-101 373.6 247 80.2
SGA_v2.0_scaffold29G12102 Striga asiatica HOM05D007255 ORTHO05D009052 1.1e-99 367.1 244 75.4
Oeu064665.2 Olea europaea HOM05D007255 ORTHO05D009052 1.5e-90 336.7 264 68.6
Dinv10428 Davidia involucrata HOM05D007255 ORTHO05D009052 2.5e-88 329.3 244 68.9
Nitab4.5_0005972g0030 Nicotiana tabacum HOM05D007255 ORTHO05D009052 2.5e-88 329.3 244 69.3
Nitab4.5_0000038g0080 Nicotiana tabacum HOM05D007255 ORTHO05D009052 3.2e-88 328.9 244 69.3
Actinidia34549 Actinidia chinensis HOM05D007255 ORTHO05D009052 5.1e-86 321.6 241 68.9
Hma1.2p1_0161F.1_g071360 Hydrangea macrophylla HOM05D007255 ORTHO05D009052 1.5e-85 320.1 244 67.6
Thecc.01G211700 Theobroma cacao HOM05D007255 ORTHO05D009052 1.6e-84 316.6 241 66.4
Cc01_g16200 Coffea canephora HOM05D007255 ORTHO05D009052 1.1e-83 313.9 245 68.6
Sopen09g020080 Solanum pennellii HOM05D007255 ORTHO05D009052 1.1e-83 313.9 245 68.2
Solyc09g058990.3 Solanum lycopersicum HOM05D007255 ORTHO05D009052 5.3e-83 311.6 245 67.3
Potri.002G250500 Populus trichocarpa HOM05D007255 ORTHO05D009052 7.2e-80 301.2 244 64.3
Rhsim01G0248900 Rhododendron simsii HOM05D007255 ORTHO05D009052 7.2e-80 301.2 245 65.3
COL.COLO4_28926 Corchorus olitorius HOM05D007255 ORTHO05D009052 1.6e-79 300.1 248 62.5
Duzib211G0668 Durio zibethinus HOM05D007255 ORTHO05D009052 1.8e-78 296.6 241 63.5
FvH4_2g17870 Fragaria vesca HOM05D007255 ORTHO05D009052 2.3e-78 296.2 244 63.5
Gorai.007G159200 Gossypium raimondii HOM05D007255 ORTHO05D009052 2.3e-78 296.2 242 63.6
Sabra02G0190600 Salix brachista HOM05D007255 ORTHO05D009052 2.3e-78 296.2 239 64.9
TAR365G1235 Trochodendron aralioides HOM05D007255 ORTHO05D009052 3.0e-78 295.8 244 65.2
CiPaw.13G054800 Carya illinoinensis HOM05D007255 ORTHO05D009052 6.7e-78 294.7 244 63.9
FAN15G3515 Fragaria x ananassa HOM05D007255 ORTHO05D009052 6.7e-78 294.7 244 62.7
FAN27G1291 Fragaria x ananassa HOM05D007255 ORTHO05D009052 6.7e-78 294.7 244 62.7
RcHm_v2.0_Chr6g0282891 Rosa chinensis HOM05D007255 ORTHO05D009052 6.7e-78 294.7 244 63.1
Prupe.8G191100 Prunus persica HOM05D007255 ORTHO05D009052 1.1e-77 293.9 248 62.5
Gohir.D11G148500 Gossypium hirsutum HOM05D007255 ORTHO05D009052 1.9e-77 293.1 242 63.2
Gohir.A11G142200 Gossypium hirsutum HOM05D007255 ORTHO05D009052 2.5e-77 292.7 241 62.7
FAN24G0557 Fragaria x ananassa HOM05D007255 ORTHO05D009052 4.3e-77 292.0 244 62.7
PGR044G0433 Punica granatum HOM05D007255 ORTHO05D009052 9.7e-77 290.8 207 70.5
Sc05g0001760 Simmondsia chinensis HOM05D007255 ORTHO05D009052 1.7e-76 290.0 246 62.2
Lsat_1_v5_gn_5_178401 Lactuca sativa HOM05D007255 ORTHO05D009052 3.7e-76 288.9 244 62.3
Eucgr.K02090 Eucalyptus grandis HOM05D007255 ORTHO05D009052 1.1e-75 287.3 244 63.1
Cpa.g.sc8.78 Carica papaya HOM05D007255 ORTHO05D009052 1.8e-75 286.6 239 63.2
Ca_23187_v3 Cicer arietinum L. HOM05D007255 ORTHO05D009052 2.4e-75 286.2 244 61.5
Ca_30803_v3 Cicer arietinum L. HOM05D007255 ORTHO05D009052 2.4e-75 286.2 244 61.5
QL09p046138 Quercus lobata HOM05D007255 ORTHO05D009052 1.5e-74 283.5 243 59.3
TWI18G1029 Tripterygium wilfordii HOM05D007255 ORTHO05D009052 2.0e-74 283.1 241 63.1
vmacro14695 Vaccinium macrocarpon HOM05D007255 ORTHO05D009052 3.4e-74 282.3 247 62.8
unitig_62.g23864 Utricularia gibba HOM05D007255 ORTHO05D009052 4.5e-74 282.0 251 60.6
Phvul.010G031200 Phaseolus vulgaris HOM05D007255 ORTHO05D009052 2.2e-73 279.6 246 61.0
Thhalv10004862m.g Eutrema salsugineum HOM05D007255 ORTHO05D009052 3.8e-73 278.9 239 62.3
arahy.Tifrunner.gnm1.ann1.TV22BE Arachis hypogaea HOM05D007255 ORTHO05D009052 8.5e-73 277.7 250 60.4
CANSAT01G0773 Cannabis sativa HOM05D007255 ORTHO05D009052 1.1e-72 277.3 244 58.6
Aa31LG5G18020 Aethionema arabicum HOM05D007255 ORTHO05D009052 1.4e-72 276.9 240 61.2
Aqoxy5G00040 Aquilegia oxysepala HOM05D007255 ORTHO05D009052 1.4e-72 276.9 245 61.2
Manes.13G054000 Manihot esculenta HOM05D007255 ORTHO05D009052 1.4e-72 276.9 239 60.7
Hund02793 Selenicereus undatus HOM05D007255 ORTHO05D009052 1.9e-72 276.6 246 61.4
MD10G1152600 Malus domestica HOM05D007255 ORTHO05D009052 2.5e-72 276.2 267 58.8
Glyma.03G089600 Glycine max HOM05D007255 ORTHO05D009052 3.2e-72 275.8 246 58.9
TPR.G15196 Trifolium pratense HOM05D007255 ORTHO05D009052 4.2e-72 275.4 244 60.7
Ah.11g051090 Amaranthus hybridus HOM05D007255 ORTHO05D009052 1.2e-71 273.9 245 61.2
Medtr8g011480 Medicago truncatula HOM05D007255 ORTHO05D009052 1.2e-71 273.9 241 60.2
Atru.chr6.3551 Acer truncatum HOM05D007255 ORTHO05D009052 1.6e-71 273.5 244 59.4
A06p39120 Brassica napus HOM05D007255 ORTHO05D009052 1.6e-71 273.5 239 61.1
Sp2g18890 Schrenkiella parvula HOM05D007255 ORTHO05D009052 2.7e-71 272.7 238 61.8
ECA248G0740 Erigeron canadensis HOM05D007255 ORTHO05D009052 3.6e-71 272.3 244 60.7
C07p39220 Brassica napus HOM05D007255 ORTHO05D009052 4.7e-71 271.9 239 60.3
BolC7t44442H Brassica oleracea HOM05D007255 ORTHO05D009052 4.7e-71 271.9 239 60.3
Nn1g08274 Nelumbo nucifera HOM05D007255 ORTHO05D009052 4.7e-71 271.9 310 51.3
THA.LOC104818995 Tarenaya hassleriana HOM05D007255 ORTHO05D009052 4.7e-71 271.9 242 59.9
Carub.0003s0699 Capsella rubella HOM05D007255 ORTHO05D009052 1.0e-70 270.8 222 64.4
BraA06t26826Z Brassica rapa HOM05D007255 ORTHO05D009052 1.4e-70 270.4 239 60.7
AT3G07440 Arabidopsis thaliana HOM05D007255 ORTHO05D009052 1.8e-70 270.0 220 63.6
AL3G18750 Arabidopsis lyrata HOM05D007255 ORTHO05D009052 3.9e-70 268.9 220 63.2
Lj3g0001968 Lotus japonicus HOM05D007255 ORTHO05D009052 1.1e-69 267.3 256 57.4
Lalb_Chr12g0210041 Lupinus albus HOM05D007255 ORTHO05D009052 3.3e-69 265.8 205 64.4
unitig_64.g29772 Utricularia gibba HOM05D007255 ORTHO05D009052 3.3e-69 265.8 236 59.3
arahy.Tifrunner.gnm1.ann1.UDT0KZ Arachis hypogaea HOM05D007255 ORTHO05D009052 2.2e-68 263.1 209 67.5
CARHR082090 Cardamine hirsuta HOM05D007255 ORTHO05D009052 3.7e-68 262.3 222 61.7
BcaC06g30785 Brassica carinata HOM05D007255 ORTHO05D009052 1.8e-67 260.0 232 60.3
AUR62028710 Chenopodium quinoa HOM05D007255 ORTHO05D009052 1.8e-67 260.0 264 56.8
MELO3C012737.2 Cucumis melo HOM05D007255 ORTHO05D009052 5.3e-67 258.5 246 58.1
EL10Ac5g10635 Beta vulgaris HOM05D007255 ORTHO05D009052 7.0e-67 258.1 245 58.8
Nn1g03664 Nelumbo nucifera HOM05D007255 ORTHO05D009052 4.5e-66 255.4 243 58.0
Ciclev10016497m.g Citrus clementina HOM05D007255 ORTHO05D009052 5.9e-66 255.0 244 58.2
CsaV3_7G026920 Cucumis sativus L. HOM05D007255 ORTHO05D009052 1.0e-65 254.2 244 58.6
PSO357G0536 Papaver somniferum HOM05D007255 ORTHO05D009052 1.0e-65 254.2 216 59.3
PSO170G5614 Papaver somniferum HOM05D007255 ORTHO05D009052 1.7e-65 253.4 232 56.9
ClCG09G008130 Citrullus lanatus HOM05D007352 ORTHO05D009052 1.4e-64 250.4 278 53.6
AT5G48530 Arabidopsis thaliana HOM05D007255 ORTHO05D009052 4.2e-64 248.8 202 65.3
Sed0001908 Sechium edule HOM05D007255 ORTHO05D009052 1.6e-63 246.9 245 55.9
Peaxi162Scf00335g01514 Petunia axillaris HOM05D007255 ORTHO05D009052 5.2e-62 241.9 246 57.7
Os02g0478500 Oryza sativa ssp. japonica HOM05D007255 ORTHO05D009052 1.5e-61 240.4 163 70.6
GSVIVG01006076001 Vitis vinifera HOM05D007255 ORTHO05D009052 4.4e-61 238.8 164 74.4
Zm00001eb241080 Zea mays HOM05D007255 ORTHO05D009052 5.7e-61 238.4 164 70.1
CSS0043687 Camellia sinensis var. sinensis HOM05D007255 ORTHO05D009052 9.7e-61 237.7 162 76.5
Haze_03304 Corylus avellana HOM05D007255 ORTHO05D009052 1.8e-59 233.4 175 69.1
ATR0491G001 Amborella trichopoda HOM05D007255 ORTHO05D009052 1.0e-57 227.6 156 69.2
DCAR_018628 Daucus carota HOM05D007255 ORTHO05D009052 1.7e-57 226.9 164 73.2
HanXRQChr01g0025051 Helianthus annuus HOM05D007255 ORTHO05D009052 5.0e-57 225.3 186 66.7
Lj1A100G17 Lonicera japonica HOM05D007255 ORTHO05D009052 7.2e-56 221.5 184 69.0
Aqoxy2G00044 Aquilegia oxysepala HOM05D007255 ORTHO05D009052 2.3e-54 216.5 178 62.9
Actinidia23788 Actinidia chinensis HOM05D007255 ORTHO05D009052 2.4e-51 206.5 197 57.9
Glyma.16G083400 Glycine max HOM05D007255 ORTHO05D009052 1.5e-37 160.6 107 71.0
HPP92_024260 Vanilla planifolia HOM05D007255 ORTHO05D009052 1.3e-36 157.5 136 56.6
AUR62008128 Chenopodium quinoa HOM05D007255 ORTHO05D009052 3.5e-34 149.4 134 57.5
VMungo0331G1225 Vigna mungo HOM05D007255 ORTHO05D009052 2.6e-29 133.3 94 70.2
HPP92_024228 Vanilla planifolia HOM05D007255 ORTHO05D009052 6.6e-25 118.6 85 68.2
VMungo0331G0526 Vigna mungo HOM05D007255 ORTHO05D009052 8.6e-25 118.2 110 61.8
Prupe.8G191300 Prunus persica HOM05D007255 ORTHO05D009052 9.8e-21 104.8 97 58.8
CDE04G1852 Ceratophyllum demersum HOM05D007255 ORTHO05D009052 1.9e-19 100.5 77 64.9
SEGI_09952 Sequoiadendron giganteum HOM05D007255 ORTHO05D009052 3.9e-17 92.8 54 79.6
VMungo0251G0654 Vigna mungo HOM05D007255 ORTHO05D009052 1.8e-14 84.0 84 58.3
GSVIVG01006250001 Vitis vinifera HOM05D007255 ORTHO05D009052 6.4e-12 75.5 82 51.2


User provided reference genes

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