Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Migut.D00663 Erythranthe guttata HOM05D002739 ORTHO05D002877 5.9e-64 247.3 118 100.0
Migut.D00661 Erythranthe guttata HOM05D002739 ORTHO05D002877 1.6e-40 169.5 114 67.5
Migut.D00796 Erythranthe guttata HOM05D002739 ORTHO05D002877 2.6e-19 99.0 104 43.3
QL04p013260 Quercus lobata HOM05D002739 ORTHO05D002877 1.4e-17 93.2 82 43.9
Rhsim07G0062000 Rhododendron simsii HOM05D002739 ORTHO05D002877 1.9e-17 92.8 82 47.6
QL04p013280 Quercus lobata HOM05D002739 ORTHO05D002877 5.4e-17 91.3 96 42.7
Cc02_g29460 Coffea canephora HOM05D002739 ORTHO05D002877 1.2e-16 90.1 85 43.5
Actinidia19441 Actinidia chinensis HOM05D002739 ORTHO05D002877 2.1e-16 89.4 82 45.1
QL04p013297 Quercus lobata HOM05D002739 ORTHO05D002877 2.1e-16 89.4 82 41.5
SGA_v2.0_scaffold24G10703 Striga asiatica HOM05D002739 ORTHO05D002877 2.1e-16 89.4 109 35.8
MSTRG.21276 Avicennia marina HOM05D002739 ORTHO05D002877 1.8e-15 86.3 113 38.1
vmacro13721 Vaccinium macrocarpon HOM05D002739 ORTHO05D002877 3.0e-15 85.5 102 38.2
Hund15707 Selenicereus undatus HOM05D002739 ORTHO05D002877 1.9e-14 82.8 82 40.2
DCAR_022358 Daucus carota HOM05D002739 ORTHO05D002877 2.5e-14 82.4 102 37.3
BcaC09g51875 Brassica carinata HOM05D002739 ORTHO05D002877 4.3e-14 81.6 81 39.5
Manes.04G135500 Manihot esculenta HOM05D002739 ORTHO05D002877 4.3e-14 81.6 94 36.2
A01p07300 Brassica napus HOM05D002739 ORTHO05D002877 5.6e-14 81.3 80 40.0
BraA01t00679Z Brassica rapa HOM05D002739 ORTHO05D002877 5.6e-14 81.3 80 40.0
Haze_23193 Corylus avellana HOM05D002739 ORTHO05D002877 5.6e-14 81.3 82 41.5
Sabra01G0017600 Salix brachista HOM05D002739 ORTHO05D002877 5.6e-14 81.3 114 38.6
C01p08060 Brassica napus HOM05D002739 ORTHO05D002877 7.4e-14 80.9 80 40.0
CSS0000269 Camellia sinensis var. sinensis HOM05D002739 ORTHO05D002877 7.4e-14 80.9 101 34.7
CSS0014844 Camellia sinensis var. sinensis HOM05D002739 ORTHO05D002877 7.4e-14 80.9 101 34.7
CSS0046368 Camellia sinensis var. sinensis HOM05D002739 ORTHO05D002877 7.4e-14 80.9 101 34.7
CSS0048223 Camellia sinensis var. sinensis HOM05D002739 ORTHO05D002877 7.4e-14 80.9 101 34.7
Duzib168G0444 Durio zibethinus HOM05D002739 ORTHO05D002877 7.4e-14 80.9 105 35.2
Oeu027475.1 Olea europaea HOM05D002739 ORTHO05D002877 7.4e-14 80.9 106 29.2
PSO384G1774 Papaver somniferum HOM05D002739 ORTHO05D002877 7.4e-14 80.9 100 36.0
PSO384G3657 Papaver somniferum HOM05D002739 ORTHO05D002877 7.4e-14 80.9 100 36.0
TAR623G0756 Trochodendron aralioides HOM05D002739 ORTHO05D002877 7.4e-14 80.9 104 33.7
BcaNung03432 Brassica carinata HOM05D002739 ORTHO05D002877 9.6e-14 80.5 80 38.8
Lj1g0028228 Lotus japonicus HOM05D002739 ORTHO05D002877 9.6e-14 80.5 103 35.9
EL10Ac4g08094 Beta vulgaris HOM05D002739 ORTHO05D002877 1.3e-13 80.1 82 39.0
PSO339G6632 Papaver somniferum HOM05D002739 ORTHO05D002877 1.3e-13 80.1 100 37.0
arahy.Tifrunner.gnm1.ann1.ZFJ3WN Arachis hypogaea HOM05D002739 ORTHO05D002877 1.6e-13 79.7 104 39.4
CiPaw.13G010100 Carya illinoinensis HOM05D002739 ORTHO05D002877 1.6e-13 79.7 82 36.6
Hma1.2p1_0817F.1_g223085 Hydrangea macrophylla HOM05D002739 ORTHO05D002877 2.1e-13 79.3 106 34.9
Hma1.2p1_2313F.1_g319610 Hydrangea macrophylla HOM05D002739 ORTHO05D002877 2.1e-13 79.3 106 34.9
Potri.001G023200 Populus trichocarpa HOM05D002739 ORTHO05D002877 2.1e-13 79.3 81 38.3
arahy.Tifrunner.gnm1.ann1.YF5LNJ Arachis hypogaea HOM05D002739 ORTHO05D002877 2.8e-13 79.0 105 39.0
Glyma.14G018800 Glycine max HOM05D002739 ORTHO05D002877 3.7e-13 78.6 83 43.4
QL04p013222 Quercus lobata HOM05D002739 ORTHO05D002877 4.8e-13 78.2 102 34.3
Potri.001G023300 Populus trichocarpa HOM05D002739 ORTHO05D002877 6.2e-13 77.8 113 35.4
BcaB03g12664 Brassica carinata HOM05D002739 ORTHO05D002877 8.1e-13 77.4 81 38.3
QL01p017875 Quercus lobata HOM05D002739 ORTHO05D002877 8.1e-13 77.4 111 34.2
THA.LOC104819118 Tarenaya hassleriana HOM05D002739 ORTHO05D002877 8.1e-13 77.4 91 33.0
Ah.12g065190 Amaranthus hybridus HOM05D002739 ORTHO05D002877 1.1e-12 77.0 95 35.8
AT4G30880 Arabidopsis thaliana HOM05D002739 ORTHO05D002877 1.1e-12 77.0 109 30.3
BolC1t00795H Brassica oleracea HOM05D002739 ORTHO05D002877 1.1e-12 77.0 75 40.0
Cfa009830 Carpinus fangiana HOM05D002739 ORTHO05D002877 1.1e-12 77.0 86 40.7
Dinv36202 Davidia involucrata HOM05D002739 ORTHO05D002877 1.1e-12 77.0 81 38.3
MBI13_g04764_MAGBIO Magnolia biondii HOM05D002739 ORTHO05D002877 1.4e-12 76.6 78 37.2
Manes.11G031500 Manihot esculenta HOM05D002739 ORTHO05D002877 1.4e-12 76.6 109 30.3
PSO339G0568 Papaver somniferum HOM05D002739 ORTHO05D002877 1.4e-12 76.6 82 40.2
TAR623G1716 Trochodendron aralioides HOM05D002739 ORTHO05D002877 1.4e-12 76.6 101 35.6
Haze_03109 Corylus avellana HOM05D002215 ORTHO05D002238 1.8e-12 76.3 88 37.5
Nn7g36443 Nelumbo nucifera HOM05D002739 ORTHO05D002877 1.8e-12 76.3 84 34.5
Nn7g38449 Nelumbo nucifera HOM05D002739 ORTHO05D002877 1.8e-12 76.3 84 34.5
PGR031G2149 Punica granatum HOM05D002739 ORTHO05D002877 1.8e-12 76.3 83 37.3
Aqoxy2G00287 Aquilegia oxysepala HOM05D002739 ORTHO05D002877 2.4e-12 75.9 82 36.6
BcaC01g01134 Brassica carinata HOM05D002739 ORTHO05D002877 2.4e-12 75.9 80 38.8
BolC3t21155H Brassica oleracea HOM05D002739 ORTHO05D002877 2.4e-12 75.9 80 38.8
MD02G1296300 Malus domestica HOM05D002739 ORTHO05D002877 2.4e-12 75.9 105 27.6
GSVIVG01000854001 Vitis vinifera HOM05D002739 ORTHO05D002877 2.4e-12 75.9 81 42.0
C03p88470 Brassica napus HOM05D002739 ORTHO05D002877 3.1e-12 75.5 80 38.8
Ciclev10017226m.g Citrus clementina HOM05D002739 ORTHO05D002877 3.1e-12 75.5 103 32.0
PSO339G0161 Papaver somniferum HOM05D002739 ORTHO05D002877 3.1e-12 75.5 108 33.3
Thhalv10026851m.g Eutrema salsugineum HOM05D002739 ORTHO05D002877 4.0e-12 75.1 109 31.2
THA.LOC104826714 Tarenaya hassleriana HOM05D002739 ORTHO05D002877 4.0e-12 75.1 107 28.0
AL7G21220 Arabidopsis lyrata HOM05D002739 ORTHO05D002877 5.3e-12 74.7 109 29.4
Cpa.g.sc84.10 Carica papaya HOM05D002739 ORTHO05D002877 5.3e-12 74.7 107 32.7
Gohir.A07G121800 Gossypium hirsutum HOM05D002739 ORTHO05D002877 5.3e-12 74.7 83 36.1
Gohir.D07G126100 Gossypium hirsutum HOM05D002739 ORTHO05D002877 5.3e-12 74.7 83 36.1
Sp7g28750 Schrenkiella parvula HOM05D002739 ORTHO05D002877 5.3e-12 74.7 105 34.3
Nn2g15045 Nelumbo nucifera HOM05D002739 ORTHO05D002877 1.2e-11 73.6 82 39.0
Nn7g36442 Nelumbo nucifera HOM05D002739 ORTHO05D002877 1.5e-11 73.2 104 34.6
Nn7g36457 Nelumbo nucifera HOM05D002739 ORTHO05D002877 1.5e-11 73.2 104 34.6
Nn7g38448 Nelumbo nucifera HOM05D002739 ORTHO05D002877 1.5e-11 73.2 104 34.6
AUR62037242 Chenopodium quinoa HOM05D000453 ORTHO05D000387 2.0e-11 72.8 109 30.3
PSO384G1879 Papaver somniferum HOM05D002739 ORTHO05D002877 2.0e-11 72.8 82 41.5
Thecc.09G243000 Theobroma cacao HOM05D002739 ORTHO05D002877 2.0e-11 72.8 102 33.3
Nn7g36467 Nelumbo nucifera HOM05D002739 ORTHO05D002877 2.6e-11 72.4 78 33.3
HanXRQChr01g0020811 Helianthus annuus HOM05D002739 ORTHO05D002877 3.4e-11 72.0 81 35.8
EL10Ac2g02872 Beta vulgaris HOM05D002739 ORTHO05D002877 4.5e-11 71.6 104 30.8
ECA238G2259 Erigeron canadensis HOM05D002739 ORTHO05D002877 4.5e-11 71.6 81 34.6
PSO384G3480 Papaver somniferum HOM05D002739 ORTHO05D002877 4.5e-11 71.6 82 35.4
Sabra01G0017500 Salix brachista HOM05D002739 ORTHO05D002877 4.5e-11 71.6 75 37.3
Ciclev10017233m.g Citrus clementina HOM05D002739 ORTHO05D002877 5.8e-11 71.2 103 30.1
Eucgr.G03260 Eucalyptus grandis HOM05D002739 ORTHO05D002877 7.6e-11 70.9 81 34.6
Sc14g0005800 Simmondsia chinensis HOM05D002739 ORTHO05D002877 7.6e-11 70.9 76 36.8
Medtr4g077180 Medicago truncatula HOM05D002739 ORTHO05D002877 9.9e-11 70.5 107 31.8
Nn7g36463 Nelumbo nucifera HOM05D002739 ORTHO05D002877 9.9e-11 70.5 89 32.6
QL04p013227 Quercus lobata HOM05D002739 ORTHO05D002877 9.9e-11 70.5 99 30.3
arahy.Tifrunner.gnm1.ann1.K6R24J Arachis hypogaea HOM05D018715 ORTHO05D002877 1.3e-10 70.1 113 37.2
Gorai.001G136100 Gossypium raimondii HOM05D002739 ORTHO05D002877 1.3e-10 70.1 87 35.6
Nn7g36459 Nelumbo nucifera HOM05D002739 ORTHO05D002877 1.3e-10 70.1 104 32.7
EL10Ac2g02871 Beta vulgaris HOM05D002739 ORTHO05D002877 1.7e-10 69.7 75 37.3
CiPaw.13G153200 Carya illinoinensis HOM05D002739 ORTHO05D002877 1.7e-10 69.7 104 29.8
HanXRQChr14g0441021 Helianthus annuus HOM05D002739 ORTHO05D002877 1.7e-10 69.7 84 34.5
AUR62026811 Chenopodium quinoa HOM05D000453 ORTHO05D000387 2.2e-10 69.3 75 37.3
COL.COLO4_36502 Corchorus olitorius HOM05D002739 ORTHO05D002877 2.2e-10 69.3 103 32.0
Medtr4g076150 Medicago truncatula HOM05D002739 ORTHO05D002877 2.2e-10 69.3 110 30.0
Aqoxy2G00278 Aquilegia oxysepala HOM05D002739 ORTHO05D002877 2.9e-10 68.9 98 32.7
Lsat_1_v5_gn_1_97381 Lactuca sativa HOM05D002739 ORTHO05D002877 2.9e-10 68.9 93 34.4
QL01p026933 Quercus lobata HOM05D002739 ORTHO05D002877 2.9e-10 68.9 110 29.1
QL01p026935 Quercus lobata HOM05D002739 ORTHO05D002877 2.9e-10 68.9 108 29.6
PSO339G3199 Papaver somniferum HOM05D002739 ORTHO05D002877 3.8e-10 68.6 82 34.1
Psat7g179880 Pisum sativum HOM05D002739 ORTHO05D002877 3.8e-10 68.6 110 30.9
Manes.14G006000 Manihot esculenta HOM05D002739 ORTHO05D002877 4.9e-10 68.2 101 30.7
QL04p013244 Quercus lobata HOM05D002739 ORTHO05D002877 4.9e-10 68.2 95 31.6
Sc10g0004220 Simmondsia chinensis HOM05D002739 ORTHO05D002877 4.9e-10 68.2 108 25.9
VMungo0647G0462 Vigna mungo HOM05D002739 ORTHO05D002877 4.9e-10 68.2 104 32.7
Ciclev10017598m.g Citrus clementina HOM05D002739 ORTHO05D002877 6.4e-10 67.8 86 38.4
GSVIVG01000855001 Vitis vinifera HOM05D002739 ORTHO05D002877 6.4e-10 67.8 68 39.7
TAR369G0010 Trochodendron aralioides HOM05D001447 ORTHO05D005923 8.4e-10 67.4 109 31.2
arahy.Tifrunner.gnm1.ann1.7A4EFU Arachis hypogaea HOM05D018715 ORTHO05D002877 1.1e-09 67.0 114 36.0
AUR62037241 Chenopodium quinoa HOM05D002739 ORTHO05D002877 1.1e-09 67.0 113 30.1
PSO384G1869 Papaver somniferum HOM05D002739 ORTHO05D002877 1.1e-09 67.0 115 29.6
GSVIVG01000856001 Vitis vinifera HOM05D002739 ORTHO05D002877 1.1e-09 67.0 69 42.0
Sabra09G0035200 Salix brachista HOM05D002739 ORTHO05D002877 1.4e-09 66.6 108 33.3
AUR62026812 Chenopodium quinoa HOM05D002739 ORTHO05D002877 1.9e-09 66.2 113 30.1
PSO384G0435 Papaver somniferum HOM05D002739 ORTHO05D002877 1.9e-09 66.2 81 34.6
Sabra09G0035300 Salix brachista HOM05D002739 ORTHO05D002877 1.9e-09 66.2 109 32.1
Sabra09G0035400 Salix brachista HOM05D002739 ORTHO05D002877 1.9e-09 66.2 109 32.1
Sabra09G0035500 Salix brachista HOM05D002739 ORTHO05D002877 1.9e-09 66.2 109 32.1
TAR622G0220 Trochodendron aralioides HOM05D002739 ORTHO05D002877 1.9e-09 66.2 101 33.7
Ciclev10017446m.g Citrus clementina HOM05D002739 ORTHO05D002877 2.4e-09 65.9 73 38.4
Lalb_Chr04g0263901 Lupinus albus HOM05D002739 ORTHO05D002877 3.2e-09 65.5 107 30.8
SHI27456 Sapria himalayana HOM05D000002 ORTHO05D000001 3.2e-09 65.5 107 28.0
TPR.G22564 Trifolium pratense HOM05D002739 ORTHO05D002877 4.2e-09 65.1 114 28.1
Lj3g0006865 Lotus japonicus HOM05D002739 ORTHO05D002877 5.5e-09 64.7 111 27.9
TPR.G35352 Trifolium pratense HOM05D002739 ORTHO05D002877 5.5e-09 64.7 100 29.0
PSO339G1495 Papaver somniferum HOM05D002739 ORTHO05D002877 7.1e-09 64.3 81 32.1
ATR0721G147 Amborella trichopoda HOM05D002739 ORTHO05D002877 1.2e-08 63.5 101 31.7
Lj3g0013733 Lotus japonicus HOM05D018715 ORTHO05D025661 1.2e-08 63.5 97 34.0
Ciclev10017249m.g Citrus clementina HOM05D002739 ORTHO05D002877 1.6e-08 63.2 68 39.7
Ciclev10018012m.g Citrus clementina HOM05D002739 ORTHO05D002877 1.6e-08 63.2 68 39.7
Cpa.g.sc1008.2 Carica papaya HOM05D002739 ORTHO05D002877 2.1e-08 62.8 78 33.3
Cpa.g.sc84.11 Carica papaya HOM05D002739 ORTHO05D002877 2.1e-08 62.8 107 33.6
Glyma.14G018900 Glycine max HOM05D002739 ORTHO05D002877 3.5e-08 62.0 82 32.9
TPR.G35362 Trifolium pratense HOM05D002739 ORTHO05D002877 3.5e-08 62.0 81 34.6
Ciclev10017652m.g Citrus clementina HOM05D002739 ORTHO05D002877 6.0e-08 61.2 64 37.5
Medtr5g093780 Medicago truncatula HOM05D002739 ORTHO05D002877 6.0e-08 61.2 94 30.9
RcHm_v2.0_Chr7g0218541 Rosa chinensis HOM05D002739 ORTHO05D002877 6.0e-08 61.2 89 31.5
COL.COLO4_04118 Corchorus olitorius HOM05D002739 ORTHO05D002877 7.9e-08 60.8 97 30.9
Potri.009G048800 Populus trichocarpa HOM05D002739 ORTHO05D002877 1.0e-07 60.5 89 31.5
Nn7g36466 Nelumbo nucifera HOM05D002739 ORTHO05D002877 3.0e-07 58.9 98 27.6
Medtr7g083580 Medicago truncatula HOM05D002739 ORTHO05D002877 3.9e-07 58.5 82 30.5
Zm00001eb419150 Zea mays HOM05D042461 ORTHO05D002877 6.7e-07 57.8 83 34.9
Os03g0369100 Oryza sativa ssp. japonica HOM05D002739 ORTHO05D002877 8.7e-07 57.4 87 29.9
Potri.009G048900 Populus trichocarpa HOM05D002739 ORTHO05D002877 8.7e-07 57.4 92 29.3
ATR0721G129 Amborella trichopoda HOM05D002739 ORTHO05D002877 1.5e-06 56.6 64 37.5
Os10g0148000 Oryza sativa ssp. japonica HOM05D002739 ORTHO05D002877 1.9e-06 56.2 46 45.7
PSO349G0133 Papaver somniferum HOM05D002739 ORTHO05D002877 1.9e-06 56.2 109 29.4
Zm00001eb369450 Zea mays HOM05D002739 ORTHO05D002877 2.5e-06 55.8 113 24.8
Cfa021004 Carpinus fangiana HOM05D002739 ORTHO05D002877 3.3e-06 55.5 111 29.7
PSO349G0096 Papaver somniferum HOM05D002739 ORTHO05D002877 4.3e-06 55.1 101 28.7
unitig_60.g25717 Utricularia gibba HOM05D002739 ORTHO05D002877 5.6e-06 54.7 72 37.5


User provided reference genes

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