Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Migut.D00657 Erythranthe guttata HOM05D004084 ORTHO05D004662 2.7e-146 521.9 259 100.0
MSTRG.21348 Avicennia marina HOM05D004084 ORTHO05D004662 1.9e-91 339.7 251 70.1
SGA_v2.0_scaffold29G12252 Striga asiatica HOM05D004084 ORTHO05D004662 2.4e-86 322.8 251 66.9
MSTRG.17633 Avicennia marina HOM05D004084 ORTHO05D004662 2.9e-79 299.3 247 64.0
Nitab4.5_0012538g0010 Nicotiana tabacum HOM05D004084 ORTHO05D004662 3.3e-75 285.8 252 62.7
Dinv05100 Davidia involucrata HOM05D004084 ORTHO05D004662 2.1e-74 283.1 250 59.2
Nitab4.5_0000718g0220 Nicotiana tabacum HOM05D004084 ORTHO05D004662 4.8e-74 282.0 253 62.5
Oeu025904.1 Olea europaea HOM05D004084 ORTHO05D004662 6.9e-73 278.1 266 62.4
MSTRG.17516 Avicennia marina HOM05D004084 ORTHO05D004662 9.0e-73 277.7 217 67.3
Dinv36171 Davidia involucrata HOM05D004084 ORTHO05D004662 4.5e-72 275.4 253 60.1
Oeu016695.1 Olea europaea HOM05D004084 ORTHO05D004662 3.8e-71 272.3 234 63.2
Cc08_g06320 Coffea canephora HOM05D004084 ORTHO05D004662 4.2e-70 268.9 258 62.4
Hma1.2p1_0129F.1_g060160 Hydrangea macrophylla HOM05D004084 ORTHO05D004662 4.2e-70 268.9 255 60.0
SGA_v2.0_scaffold8G04547 Striga asiatica HOM05D001938 ORTHO05D001965 4.2e-70 268.9 252 59.5
PGSC0003DMG400022698 Solanum tuberosum HOM05D004084 ORTHO05D004662 7.1e-70 268.1 249 61.4
PGSC0003DMG400009461 Solanum tuberosum HOM05D004084 ORTHO05D004662 1.2e-69 267.3 253 58.9
Cfa009849 Carpinus fangiana HOM05D004084 ORTHO05D004662 1.6e-69 266.9 251 59.4
Migut.N02373 Erythranthe guttata HOM05D004084 ORTHO05D004662 2.1e-69 266.5 261 60.9
Peaxi162Scf00004g04520 Petunia axillaris HOM05D004084 ORTHO05D004662 4.6e-69 265.4 251 62.2
Nitab4.5_0000730g0060 Nicotiana tabacum HOM05D001938 ORTHO05D004662 6.0e-69 265.0 254 58.7
Thecc.09G249200 Theobroma cacao HOM05D004084 ORTHO05D004662 6.0e-69 265.0 221 63.8
Sopen11g024490 Solanum pennellii HOM05D004084 ORTHO05D004662 1.0e-68 264.2 253 58.5
Solyc11g064830.2 Solanum lycopersicum HOM05D004084 ORTHO05D004662 1.3e-68 263.8 253 58.1
Manes.02G139800 Manihot esculenta HOM05D004084 ORTHO05D004662 3.0e-68 262.7 255 56.9
Rhsim13G0210600 Rhododendron simsii HOM05D004084 ORTHO05D004662 5.1e-68 261.9 238 58.8
Nitab4.5_0001500g0060 Nicotiana tabacum HOM05D001938 ORTHO05D004662 1.1e-67 260.8 202 67.3
Duzib150G1594 Durio zibethinus HOM05D004084 ORTHO05D004662 5.6e-67 258.5 225 64.0
Gohir.A13G219100 Gossypium hirsutum HOM05D004084 ORTHO05D004662 9.6e-67 257.7 259 57.5
Sopen01g004320 Solanum pennellii HOM05D004084 ORTHO05D004662 9.6e-67 257.7 246 59.3
HanXRQChr14g0432231 Helianthus annuus HOM05D004084 ORTHO05D004662 1.3e-66 257.3 230 62.2
Potri.009G070600 Populus trichocarpa HOM05D004084 ORTHO05D004662 1.3e-66 257.3 241 62.2
CANSAT54G0855 Cannabis sativa HOM05D004084 ORTHO05D004662 2.1e-66 256.5 245 61.6
Solyc01g008810.3 Solanum lycopersicum HOM05D004084 ORTHO05D004662 2.8e-66 256.1 246 58.9
Lj1A284G15 Lonicera japonica HOM05D004084 ORTHO05D004662 8.2e-66 254.6 202 68.8
Ciclev10016417m.g Citrus clementina HOM05D004084 ORTHO05D004662 1.1e-65 254.2 251 57.4
Gorai.013G253900 Gossypium raimondii HOM05D004084 ORTHO05D004662 1.4e-65 253.8 259 56.8
Duzib168G1105 Durio zibethinus HOM05D004084 ORTHO05D004662 1.8e-65 253.4 256 57.8
Gohir.D13G222800 Gossypium hirsutum HOM05D004084 ORTHO05D004662 3.1e-65 252.7 259 56.8
FvH4_3g27900 Fragaria vesca HOM05D004084 ORTHO05D004662 9.0e-65 251.1 204 65.2
FAN21G2250 Fragaria x ananassa HOM05D004084 ORTHO05D004662 9.0e-65 251.1 204 65.2
TWI75G0849 Tripterygium wilfordii HOM05D004084 ORTHO05D004662 2.6e-64 249.6 269 52.0
CiPaw.14G113600 Carya illinoinensis HOM05D004084 ORTHO05D004662 3.4e-64 249.2 222 63.5
GSVIVG01037269001 Vitis vinifera HOM05D004084 ORTHO05D004662 3.4e-64 249.2 204 63.2
Atru.chr3.2757 Acer truncatum HOM05D004084 ORTHO05D004662 4.5e-64 248.8 203 64.5
Atru.chr4.1902 Acer truncatum HOM05D004084 ORTHO05D004662 4.5e-64 248.8 208 63.5
FAN25G0474 Fragaria x ananassa HOM05D004084 ORTHO05D004662 4.5e-64 248.8 204 64.7
Eucgr.B03731 Eucalyptus grandis HOM05D004084 ORTHO05D004662 7.6e-64 248.1 203 65.5
FAN16G3201 Fragaria x ananassa HOM05D004084 ORTHO05D004662 1.0e-63 247.7 204 64.7
RcHm_v2.0_Chr5g0050631 Rosa chinensis HOM05D004084 ORTHO05D004662 1.0e-63 247.7 231 58.9
TAR623G1229 Trochodendron aralioides HOM05D004084 ORTHO05D004662 1.3e-63 247.3 226 60.6
MD11G1185700 Malus domestica HOM05D004084 ORTHO05D004662 2.2e-63 246.5 238 60.1
ECA238G4029 Erigeron canadensis HOM05D004084 ORTHO05D004662 2.9e-63 246.1 211 66.4
TWI79G0099 Tripterygium wilfordii HOM05D004084 ORTHO05D004662 2.9e-63 246.1 255 54.1
VMungo0540G1882 Vigna mungo HOM05D004084 ORTHO05D004662 2.9e-63 246.1 228 61.8
Actinidia06961 Actinidia chinensis HOM05D004084 ORTHO05D004662 6.5e-63 245.0 186 69.4
Potri.001G275900 Populus trichocarpa HOM05D004084 ORTHO05D004662 1.1e-62 244.2 257 56.8
Peaxi162Scf00032g02420 Petunia axillaris HOM05D004084 ORTHO05D004662 1.9e-62 243.4 232 59.5
Phvul.006G030700 Phaseolus vulgaris HOM05D004084 ORTHO05D004662 2.5e-62 243.0 205 62.9
Glyma.20G037400 Glycine max HOM05D004084 ORTHO05D004662 3.2e-62 242.7 224 59.8
HanXRQChr06g0182501 Helianthus annuus HOM05D004084 ORTHO05D004662 3.2e-62 242.7 221 65.6
Psat5g181240 Pisum sativum HOM05D004084 ORTHO05D004662 4.2e-62 242.3 210 60.0
Prupe.4G267100 Prunus persica HOM05D004084 ORTHO05D004662 4.2e-62 242.3 233 58.8
Os01g0954400 Oryza sativa ssp. japonica HOM05D004084 ORTHO05D004662 1.6e-61 240.4 203 61.1
Ca_03985_v3 Cicer arietinum L. HOM05D004084 ORTHO05D004662 1.3e-60 237.3 209 65.1
Glyma.07G230600 Glycine max HOM05D004084 ORTHO05D004662 5.1e-60 235.3 249 59.0
MBI13_g27798_MAGBIO Magnolia biondii HOM05D004084 ORTHO05D004662 5.1e-60 235.3 203 59.6
SGA_v2.0_scaffold310G48197 Striga asiatica HOM05D004084 ORTHO05D004662 6.7e-60 235.0 224 60.7
Sc06g0004680 Simmondsia chinensis HOM05D004084 ORTHO05D004662 1.9e-59 233.4 222 56.3
unitig_8.g3650 Utricularia gibba HOM05D004084 ORTHO05D000654 7.4e-59 231.5 250 54.8
Sp6g31330 Schrenkiella parvula HOM05D004084 ORTHO05D004662 2.2e-58 229.9 242 52.5
Sed0020433 Sechium edule HOM05D004084 ORTHO05D004662 3.7e-58 229.2 207 61.8
Hund07438 Selenicereus undatus HOM05D004084 ORTHO05D004662 1.1e-57 227.6 226 55.8
Thhalv10014482m.g Eutrema salsugineum HOM05D004084 ORTHO05D004662 1.4e-57 227.3 267 49.4
PGR102G0788 Punica granatum HOM05D004084 ORTHO05D004662 6.9e-57 224.9 251 56.2
arahy.Tifrunner.gnm1.ann1.X3DJVQ Arachis hypogaea HOM05D004084 ORTHO05D004662 9.0e-57 224.6 251 55.0
ClCG02G022880 Citrullus lanatus HOM05D004084 ORTHO05D004662 9.0e-57 224.6 211 60.7
Gorai.006G124000 Gossypium raimondii HOM05D004084 ORTHO05D004662 1.2e-56 224.2 257 53.7
Gohir.D09G106500 Gossypium hirsutum HOM05D004084 ORTHO05D004662 1.5e-56 223.8 257 54.1
MELO3C014562.2 Cucumis melo HOM05D004084 ORTHO05D004662 4.5e-56 222.2 208 62.0
Gohir.A09G110200 Gossypium hirsutum HOM05D004084 ORTHO05D004662 4.5e-56 222.2 257 53.3
EL10Ac4g10147 Beta vulgaris HOM05D004084 ORTHO05D004662 1.0e-55 221.1 240 54.6
Lalb_Chr10g0106291 Lupinus albus HOM05D004084 ORTHO05D004662 1.7e-55 220.3 309 47.6
Zm00001eb140640 Zea mays HOM05D004084 ORTHO05D004662 1.7e-55 220.3 215 59.1
Lsat_1_v5_gn_2_32240 Lactuca sativa HOM05D004084 ORTHO05D004662 3.8e-55 219.2 275 52.7
CARHR200800 Cardamine hirsuta HOM05D004084 ORTHO05D004662 6.5e-55 218.4 261 50.2
CsaV3_6G039010 Cucumis sativus L. HOM05D004084 ORTHO05D004662 1.1e-54 217.6 208 61.1
Aa31LG3G14920 Aethionema arabicum HOM05D004084 ORTHO05D004662 5.5e-54 215.3 266 48.9
AT5G12310 Arabidopsis thaliana HOM05D004084 ORTHO05D004662 1.2e-53 214.2 205 59.0
PSO339G4433 Papaver somniferum HOM05D004084 ORTHO05D004662 2.7e-53 213.0 236 50.0
Carub.0006s1082 Capsella rubella HOM05D004084 ORTHO05D004662 6.1e-53 211.8 204 57.8
PGR119G1682 Punica granatum HOM05D004084 ORTHO05D004662 1.4e-52 210.7 224 53.1
PGR123G0005 Punica granatum HOM05D004084 ORTHO05D004662 1.4e-52 210.7 224 53.1
QL01p017232 Quercus lobata HOM05D004084 ORTHO05D004662 6.7e-52 208.4 172 68.0
Sp6g24980 Schrenkiella parvula HOM05D004084 ORTHO05D004662 6.7e-52 208.4 267 46.1
MBI19_g16738_MAGBIO Magnolia biondii HOM05D004084 ORTHO05D004662 8.8e-52 208.0 245 49.8
ATR0680G173 Amborella trichopoda HOM05D004084 ORTHO05D004662 1.1e-51 207.6 201 56.7
DCAR_023764 Daucus carota HOM05D000857 ORTHO05D004662 1.5e-51 207.2 170 65.9
Lj6g0014777 Lotus japonicus HOM05D004084 ORTHO05D004662 2.0e-51 206.8 250 53.2
Haze_23226 Corylus avellana HOM05D004084 ORTHO05D004662 1.3e-50 204.1 172 64.0
Ah.04g161980 Amaranthus hybridus HOM05D004084 ORTHO05D004662 2.2e-50 203.4 238 50.8
BcaB01g05145 Brassica carinata HOM05D004084 ORTHO05D004662 6.3e-50 201.8 263 46.4
BcaNung06777 Brassica carinata HOM05D004084 ORTHO05D004662 8.2e-50 201.4 205 51.7
AT5G19430 Arabidopsis thaliana HOM05D004084 ORTHO05D004662 1.4e-49 200.7 217 52.5
A03p09480 Brassica napus HOM05D004084 ORTHO05D004662 1.4e-49 200.7 263 46.0
BraA03t10266Z Brassica rapa HOM05D004084 ORTHO05D004662 2.4e-49 199.9 265 45.3
C03p11060 Brassica napus HOM05D004084 ORTHO05D004662 3.1e-49 199.5 263 46.0
BolC3t13575H Brassica oleracea HOM05D004084 ORTHO05D004662 3.1e-49 199.5 263 46.0
THA.LOC104824623 Tarenaya hassleriana HOM05D004084 ORTHO05D004662 5.3e-49 198.7 247 50.2
BraA03t09895Z Brassica rapa HOM05D004084 ORTHO05D004662 1.2e-48 197.6 170 55.9
COL.COLO4_35673 Corchorus olitorius HOM05D004084 ORTHO05D004662 1.2e-48 197.6 172 66.9
C03p06530 Brassica napus HOM05D004084 ORTHO05D004662 2.0e-48 196.8 162 59.3
BolC3t13153H Brassica oleracea HOM05D004084 ORTHO05D004662 2.0e-48 196.8 162 59.3
A10p25510 Brassica napus HOM05D004084 ORTHO05D004662 2.6e-48 196.4 160 63.1
BolC9t59292H Brassica oleracea HOM05D004084 ORTHO05D004662 2.6e-48 196.4 209 55.0
Thhalv10014461m.g Eutrema salsugineum HOM05D004084 ORTHO05D004662 4.5e-48 195.7 210 51.0
C09p64590 Brassica napus HOM05D004084 ORTHO05D004662 2.2e-47 193.4 208 54.3
BraA10t44615Z Brassica rapa HOM05D004084 ORTHO05D004662 2.2e-47 193.4 208 54.3
A03p05580 Brassica napus HOM05D004084 ORTHO05D004662 2.9e-47 193.0 215 49.3
Carub.0006s1777 Capsella rubella HOM05D004084 ORTHO05D004662 5.0e-47 192.2 217 50.7
arahy.Tifrunner.gnm1.ann1.6L2V6B Arachis hypogaea HOM05D004084 ORTHO05D004662 9.4e-46 188.0 245 52.2
PSO384G1598 Papaver somniferum HOM05D004084 ORTHO05D004662 9.4e-46 188.0 212 50.5
Sabra09G0053400 Salix brachista HOM05D004084 ORTHO05D004662 7.9e-45 184.9 240 49.2
Nn7g36697 Nelumbo nucifera HOM05D004084 ORTHO05D004662 1.4e-44 184.1 182 58.8
HPP92_006725 Vanilla planifolia HOM05D004084 ORTHO05D004662 1.8e-44 183.7 165 60.0
Hund21983 Selenicereus undatus HOM05D004084 ORTHO05D004662 3.0e-44 183.0 209 52.2
Pp3c26_14330 Physcomitrium patens HOM05D004084 ORTHO05D004662 7.4e-43 178.3 190 53.2
AagrBONN_evm.TU.Sc2ySwM_228.3727 Anthoceros agrestis HOM05D004084 ORTHO05D004662 2.2e-42 176.8 142 60.6
SEGI_32483 Sequoiadendron giganteum HOM05D004084 ORTHO05D004662 3.7e-42 176.0 222 46.8
AL6G30920 Arabidopsis lyrata HOM05D004084 ORTHO05D004662 6.3e-42 175.3 195 52.3
SMO337G0017 Selaginella moellendorffii HOM05D004084 ORTHO05D004662 3.5e-40 169.5 195 47.7
BcaB01g04862 Brassica carinata HOM05D004084 ORTHO05D004662 1.0e-39 167.9 197 45.7
SEGI_38021 Sequoiadendron giganteum HOM05D004084 ORTHO05D004662 6.5e-39 165.2 170 55.9
CARHR193510 Cardamine hirsuta HOM05D004084 ORTHO05D004662 9.4e-38 161.4 199 48.7
Actinidia16378 Actinidia chinensis HOM05D004084 ORTHO05D004662 1.1e-35 154.5 129 56.6
CSS0029213 Camellia sinensis var. sinensis HOM05D004084 ORTHO05D004662 2.8e-34 149.8 132 65.9
Oeu061709.1 Olea europaea HOM05D004084 ORTHO05D004662 1.1e-33 147.9 132 64.4
CBR_g131 Chara braunii HOM05D004084 ORTHO05D004662 2.6e-32 143.3 193 44.6
CDE11G0350 Ceratophyllum demersum HOM05D004084 ORTHO05D004662 1.3e-31 141.0 93 68.8
CDE11G0877 Ceratophyllum demersum HOM05D004084 ORTHO05D004662 1.3e-31 141.0 172 47.1
CSS0040984 Camellia sinensis var. sinensis HOM05D004084 ORTHO05D004662 1.8e-28 130.6 134 64.2
MD03G1166600 Malus domestica HOM05D004084 ORTHO05D004662 1.8e-28 130.6 134 58.2
Phvul.006G030800 Phaseolus vulgaris HOM05D004084 ORTHO05D004662 3.0e-28 129.8 134 57.5
CDE11G0903 Ceratophyllum demersum HOM05D004084 ORTHO05D004662 4.0e-28 129.4 136 50.0
Cre13.g604750 Chlamydomonas reinhardtii HOM05D004084 ORTHO05D004662 5.2e-28 129.0 208 38.0
CSS0038115 Camellia sinensis var. sinensis HOM05D004084 ORTHO05D004662 1.8e-25 120.6 97 59.8
TPR.G27271 Trifolium pratense HOM05D004084 ORTHO05D004662 7.0e-25 118.6 126 57.1
BcaB01g05406 Brassica carinata HOM05D004084 ORTHO05D004662 7.7e-24 115.2 171 44.4
arahy.Tifrunner.gnm1.ann1.QA9X4A Arachis hypogaea HOM05D004084 ORTHO05D004662 5.0e-23 112.5 142 55.6
AUR62000187 Chenopodium quinoa HOM05D004084 ORTHO05D004662 6.5e-23 112.1 154 49.4
MD03G1166700 Malus domestica HOM05D004084 ORTHO05D004662 6.5e-23 112.1 79 63.3
Sabra16G0170200 Salix brachista HOM05D004084 ORTHO05D004662 1.1e-22 111.3 154 50.0
Cc00_g22040 Coffea canephora HOM05D004084 ORTHO05D004662 8.0e-21 105.1 111 50.5
Nn7g36696 Nelumbo nucifera HOM05D004084 ORTHO05D004662 5.2e-20 102.4 101 61.4
SHI55208 Sapria himalayana HOM05D004084 ORTHO05D004662 8.8e-20 101.7 137 51.8
PRCOL_00000691 Prasinoderma coloniale HOM05D004084 ORTHO05D004662 7.5e-19 98.6 158 38.6
AL6G23110 Arabidopsis lyrata HOM05D004084 ORTHO05D004662 4.8e-18 95.9 142 50.0
EL10Ac8g18304 Beta vulgaris HOM05D004084 ORTHO05D004662 8.3e-18 95.1 87 48.3
EL10Ac8g18303 Beta vulgaris HOM05D004084 ORTHO05D004662 2.4e-17 93.6 112 41.1
SalBow6G0813 Salvia bowleyana HOM05D004084 ORTHO05D004662 5.4e-17 92.4 101 55.4
AUR62006538 Chenopodium quinoa HOM05D001938 ORTHO05D001965 3.5e-16 89.7 105 54.3
Aqoxy2G00377 Aquilegia oxysepala HOM05D004084 ORTHO05D004662 2.3e-15 87.0 196 36.7
arahy.Tifrunner.gnm1.ann1.57BBZ5 Arachis hypogaea HOM05D004084 ORTHO05D004662 4.2e-14 82.8 92 58.7
Pp3c4_28300 Physcomitrium patens HOM05D004084 ORTHO05D004662 2.4e-09 67.0 93 39.8
Sed0017072 Sechium edule HOM05D004084 ORTHO05D004662 4.1e-09 66.2 108 37.0
CSS0027788 Camellia sinensis var. sinensis HOM05D004084 ORTHO05D004662 2.7e-08 63.5 58 53.4
Haze_23225 Corylus avellana HOM05D004084 ORTHO05D004662 5.9e-08 62.4 80 45.0
QL01p017234 Quercus lobata HOM05D004084 ORTHO05D004662 1.3e-07 61.2 95 37.9
COL.COLO4_35674 Corchorus olitorius HOM05D004084 ORTHO05D004662 3.9e-07 59.7 81 40.7
BraA10t44098Z Brassica rapa HOM05D004084 ORTHO05D004662 7.3e-06 55.5 91 42.9


User provided reference genes

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