Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Migut.D00603 Erythranthe guttata HOM05D003595 ORTHO05D004132 1.2e-65 253.1 133 100.0
MSTRG.21376 Avicennia marina HOM05D003595 ORTHO05D004132 1.1e-18 97.1 149 43.0
MSTRG.18428 Avicennia marina HOM05D003595 ORTHO05D004132 1.5e-18 96.7 157 45.9
Oeu025870.1 Olea europaea HOM05D003595 ORTHO05D004132 4.2e-18 95.1 150 43.3
MSTRG.17593 Avicennia marina HOM05D003595 ORTHO05D004132 8.9e-16 87.4 143 40.6
Oeu063323.1 Olea europaea HOM05D003595 ORTHO05D004132 2.0e-15 86.3 143 43.4
Migut.N02319 Erythranthe guttata HOM05D003595 ORTHO05D004132 3.4e-15 85.5 151 41.1
Nitab4.5_0002741g0180 Nicotiana tabacum HOM05D003595 ORTHO05D004132 3.4e-15 85.5 69 58.0
CANSAT54G2715 Cannabis sativa HOM05D003595 ORTHO05D004132 2.8e-14 82.4 73 54.8
Sopen11g025480 Solanum pennellii HOM05D003595 ORTHO05D004132 2.8e-14 82.4 75 54.7
PGSC0003DMG400007365 Solanum tuberosum HOM05D003595 ORTHO05D004132 4.9e-14 81.6 106 46.2
CiPaw.14G118800 Carya illinoinensis HOM05D003595 ORTHO05D004132 8.3e-14 80.9 91 49.5
CSS0046994 Camellia sinensis var. sinensis HOM05D003595 ORTHO05D004132 1.4e-13 80.1 70 55.7
Prupe.4G249800 Prunus persica HOM05D003595 ORTHO05D004132 1.8e-13 79.7 133 43.6
RcHm_v2.0_Chr5g0052211 Rosa chinensis HOM05D003595 ORTHO05D004132 1.8e-13 79.7 137 41.6
Eucgr.B03689 Eucalyptus grandis HOM05D003595 ORTHO05D004132 5.4e-13 78.2 102 46.1
CSS0047718 Camellia sinensis var. sinensis HOM05D003595 ORTHO05D004132 7.0e-13 77.8 143 37.1
Dinv18068 Davidia involucrata HOM05D003595 ORTHO05D004132 7.0e-13 77.8 67 58.2
Dinv22175 Davidia involucrata HOM05D000545 ORTHO05D000539 7.0e-13 77.8 133 42.1
MBI04_g36072_MAGBIO Magnolia biondii HOM05D003595 ORTHO05D004132 9.2e-13 77.4 126 35.7
TWI32G0089 Tripterygium wilfordii HOM05D003595 ORTHO05D004132 1.2e-12 77.0 70 57.1
Cfa009775 Carpinus fangiana HOM05D003595 ORTHO05D004132 2.0e-12 76.3 70 55.7
Manes.06G164000 Manihot esculenta HOM05D003595 ORTHO05D004132 2.0e-12 76.3 70 54.3
Atru.chr3.2713 Acer truncatum HOM05D003595 ORTHO05D004132 3.5e-12 75.5 89 48.3
Cfa016846 Carpinus fangiana HOM05D003595 ORTHO05D004132 3.5e-12 75.5 68 54.4
CiPaw.13G160700 Carya illinoinensis HOM05D003595 ORTHO05D004132 3.5e-12 75.5 129 37.2
MD03G1174700 Malus domestica HOM05D003595 ORTHO05D004132 3.5e-12 75.5 72 55.6
Manes.14G003000 Manihot esculenta HOM05D003595 ORTHO05D004132 3.5e-12 75.5 127 40.2
Thecc.09G234200 Theobroma cacao HOM05D003595 ORTHO05D004132 3.5e-12 75.5 128 39.1
FvH4_3g28800 Fragaria vesca HOM05D003595 ORTHO05D004132 4.5e-12 75.1 86 50.0
FAN11G1213 Fragaria x ananassa HOM05D003595 ORTHO05D004132 4.5e-12 75.1 86 50.0
FAN21G3881 Fragaria x ananassa HOM05D003595 ORTHO05D004132 4.5e-12 75.1 86 50.0
Haze_23141 Corylus avellana HOM05D003595 ORTHO05D004132 5.9e-12 74.7 70 54.3
FAN25G1008 Fragaria x ananassa HOM05D003595 ORTHO05D004132 5.9e-12 74.7 86 48.8
Glyma.08G335700 Glycine max HOM05D003595 ORTHO05D004132 5.9e-12 74.7 85 47.1
Nn7g36211 Nelumbo nucifera HOM05D003595 ORTHO05D004132 5.9e-12 74.7 130 38.5
Duzib168G1914 Durio zibethinus HOM05D003595 ORTHO05D004132 7.8e-12 74.3 129 38.8
FAN16G0889 Fragaria x ananassa HOM05D003595 ORTHO05D004132 7.8e-12 74.3 86 48.8
MD11G1192700 Malus domestica HOM05D003595 ORTHO05D004132 7.8e-12 74.3 72 55.6
Potri.001G257700 Populus trichocarpa HOM05D003595 ORTHO05D004132 7.8e-12 74.3 128 37.5
Potri.009G053000 Populus trichocarpa HOM05D003595 ORTHO05D004132 1.0e-11 73.9 124 39.5
CSS0007298 Camellia sinensis var. sinensis HOM05D003595 ORTHO05D004132 1.3e-11 73.6 70 55.7
QL01p004672 Quercus lobata HOM05D003595 ORTHO05D004132 1.3e-11 73.6 127 37.0
Cc00_g16730 Coffea canephora HOM05D003595 ORTHO05D004132 1.7e-11 73.2 132 37.9
Glyma.18G070800 Glycine max HOM05D003595 ORTHO05D004132 1.7e-11 73.2 86 48.8
Gorai.006G128400 Gossypium raimondii HOM05D003595 ORTHO05D004132 1.7e-11 73.2 108 41.7
Glyma.19G141300 Glycine max HOM05D003595 ORTHO05D004132 2.3e-11 72.8 67 52.2
Gohir.A09G114100 Gossypium hirsutum HOM05D003595 ORTHO05D004132 2.3e-11 72.8 133 36.8
Gohir.D09G110700 Gossypium hirsutum HOM05D003595 ORTHO05D004132 2.3e-11 72.8 133 36.8
MBI02_g05660_MAGBIO Magnolia biondii HOM05D003595 ORTHO05D004132 2.3e-11 72.8 100 39.0
Sabra16G0157600 Salix brachista HOM05D003595 ORTHO05D004132 2.3e-11 72.8 133 35.3
Cpa.g.sc84.51 Carica papaya HOM05D003595 ORTHO05D004132 3.9e-11 72.0 66 54.5
SGA_v2.0_scaffold42G16100 Striga asiatica HOM05D003595 ORTHO05D004132 5.0e-11 71.6 130 43.8
Potri.016G053900 Populus trichocarpa HOM05D003595 ORTHO05D004132 6.6e-11 71.2 129 38.0
PGR102G2999 Punica granatum HOM05D003595 ORTHO05D004132 6.6e-11 71.2 70 54.3
QL07p021139 Quercus lobata HOM05D003595 ORTHO05D004132 6.6e-11 71.2 69 47.8
TAR623G0789 Trochodendron aralioides HOM05D003595 ORTHO05D004132 6.6e-11 71.2 100 39.0
GSVIVG01025255001 Vitis vinifera HOM05D003595 ORTHO05D004132 6.6e-11 71.2 95 47.4
arahy.Tifrunner.gnm1.ann1.ST54C5 Arachis hypogaea HOM05D003595 ORTHO05D004132 8.6e-11 70.9 64 54.7
VMungo1383G3074 Vigna mungo HOM05D003595 ORTHO05D004132 8.6e-11 70.9 67 52.2
Sabra16G0057000 Salix brachista HOM05D003595 ORTHO05D004132 1.1e-10 70.5 63 57.1
TAR633G0913 Trochodendron aralioides HOM05D003595 ORTHO05D004132 1.1e-10 70.5 133 36.8
TAR623G1528 Trochodendron aralioides HOM05D003595 ORTHO05D004132 1.5e-10 70.1 100 39.0
Actinidia23974 Actinidia chinensis HOM05D003595 ORTHO05D004132 1.9e-10 69.7 68 55.9
Actinidia24526 Actinidia chinensis HOM05D003595 ORTHO05D004132 1.9e-10 69.7 112 44.6
Gohir.A05G069500 Gossypium hirsutum HOM05D003595 ORTHO05D004132 1.9e-10 69.7 70 52.9
Gohir.D05G072400 Gossypium hirsutum HOM05D003595 ORTHO05D004132 1.9e-10 69.7 70 52.9
Gorai.009G073400 Gossypium raimondii HOM05D003595 ORTHO05D004132 1.9e-10 69.7 70 52.9
Lalb_Chr18g0050501 Lupinus albus HOM05D003595 ORTHO05D004132 3.3e-10 68.9 73 46.6
SGA_v2.0_scaffold247G44878 Striga asiatica HOM05D003595 ORTHO05D004132 3.3e-10 68.9 69 50.7
MELO3C015194.2 Cucumis melo HOM05D003595 ORTHO05D004132 4.3e-10 68.6 63 55.6
Glyma.02G182300 Glycine max HOM05D003595 ORTHO05D004132 4.3e-10 68.6 128 35.9
Lj6g0013857 Lotus japonicus HOM05D003595 ORTHO05D004132 5.6e-10 68.2 70 52.9
LjContig00081g0018996 Lotus japonicus HOM05D003595 ORTHO05D004132 5.6e-10 68.2 69 49.3
Lalb_Chr15g0082551 Lupinus albus HOM05D003595 ORTHO05D004132 5.6e-10 68.2 73 53.4
Lalb_Chr20g0110801 Lupinus albus HOM05D003595 ORTHO05D004132 5.6e-10 68.2 65 53.8
Phvul.006G062400 Phaseolus vulgaris HOM05D003595 ORTHO05D004132 5.6e-10 68.2 70 51.4
Phvul.008G283300 Phaseolus vulgaris HOM05D003595 ORTHO05D004132 5.6e-10 68.2 69 47.8
VMungo0540G1156 Vigna mungo HOM05D003595 ORTHO05D004132 5.6e-10 68.2 70 51.4
ATR0332G104 Amborella trichopoda HOM05D003595 ORTHO05D004132 7.3e-10 67.8 135 35.6
Sed0003787 Sechium edule HOM05D003595 ORTHO05D004132 7.3e-10 67.8 70 54.3
Actinidia06343 Actinidia chinensis HOM05D003595 ORTHO05D004132 9.5e-10 67.4 68 54.4
Phvul.001G135700 Phaseolus vulgaris HOM05D003595 ORTHO05D004132 1.2e-09 67.0 64 54.7
Potri.006G053600 Populus trichocarpa HOM05D003595 ORTHO05D004132 1.2e-09 67.0 68 47.1
EL10Ac4g10246 Beta vulgaris HOM05D003595 ORTHO05D004132 1.6e-09 66.6 87 42.5
DCAR_031542 Daucus carota HOM05D003595 ORTHO05D004132 1.6e-09 66.6 74 47.3
TAR636G3263 Trochodendron aralioides HOM05D003595 ORTHO05D004132 2.1e-09 66.2 136 38.2
ClCG03G013230 Citrullus lanatus HOM05D003595 ORTHO05D004132 3.6e-09 65.5 63 52.4
CsaV3_4G024290 Cucumis sativus L. HOM05D003595 ORTHO05D004132 3.6e-09 65.5 64 54.7
Nn2g15359 Nelumbo nucifera HOM05D003595 ORTHO05D004132 3.6e-09 65.5 137 35.8
CsaV3_1G042810 Cucumis sativus L. HOM05D003595 ORTHO05D004132 4.7e-09 65.1 62 54.8
Thhalv10011876m.g Eutrema salsugineum HOM05D003595 ORTHO05D004132 4.7e-09 65.1 64 53.1
Gohir.D07G127800 Gossypium hirsutum HOM05D003595 ORTHO05D004132 4.7e-09 65.1 60 51.7
Medtr1g052770 Medicago truncatula HOM05D003595 ORTHO05D004132 4.7e-09 65.1 94 39.4
Rhsim01G0191900 Rhododendron simsii HOM05D003595 ORTHO05D004132 4.7e-09 65.1 68 52.9
Thecc.05G160100 Theobroma cacao HOM05D003595 ORTHO05D004132 4.7e-09 65.1 127 32.3
MELO3C014591.2 Cucumis melo HOM05D003595 ORTHO05D004132 6.1e-09 64.7 64 54.7
Eucgr.J00765 Eucalyptus grandis HOM05D003595 ORTHO05D004132 6.1e-09 64.7 149 35.6
Glyma.10G100700 Glycine max HOM05D003595 ORTHO05D004132 6.1e-09 64.7 88 38.6
Sabra06G0038000 Salix brachista HOM05D003595 ORTHO05D004132 6.1e-09 64.7 133 34.6
VMungo0720G0045 Vigna mungo HOM05D003595 ORTHO05D004132 6.1e-09 64.7 69 42.0
BcaB04g17226 Brassica carinata HOM05D003595 ORTHO05D004132 8.0e-09 64.3 63 52.4
A06p02550 Brassica napus HOM05D003595 ORTHO05D004132 8.0e-09 64.3 64 51.6
BraA06t23462Z Brassica rapa HOM05D003595 ORTHO05D004132 8.0e-09 64.3 64 51.6
Glyma.03G138300 Glycine max HOM05D003595 ORTHO05D004132 8.0e-09 64.3 61 50.8
Medtr3g061570 Medicago truncatula HOM05D003595 ORTHO05D004132 8.0e-09 64.3 117 40.2
AL1G59180 Arabidopsis lyrata HOM05D003595 ORTHO05D004132 1.0e-08 63.9 64 51.6
ClCG02G023190 Citrullus lanatus HOM05D003595 ORTHO05D004132 1.0e-08 63.9 85 44.7
Medtr5g096855 Medicago truncatula HOM05D003595 ORTHO05D004132 1.0e-08 63.9 68 50.0
Phvul.007G253900 Phaseolus vulgaris HOM05D003595 ORTHO05D004132 1.0e-08 63.9 67 43.3
Manes.09G025100 Manihot esculenta HOM05D003595 ORTHO05D004132 1.4e-08 63.5 67 46.3
TPR.G30109 Trifolium pratense HOM05D003595 ORTHO05D004132 1.4e-08 63.5 63 52.4
Ca_14877_v3 Cicer arietinum L. HOM05D003595 ORTHO05D004132 1.8e-08 63.2 128 35.9
Sed0023013 Sechium edule HOM05D003595 ORTHO05D004132 3.1e-08 62.4 70 48.6
THA.LOC104817909 Tarenaya hassleriana HOM05D003595 ORTHO05D004132 3.1e-08 62.4 96 41.7
BcaC08g43305 Brassica carinata HOM05D003595 ORTHO05D004132 4.0e-08 62.0 64 50.0
C06p06520 Brassica napus HOM05D003595 ORTHO05D004132 4.0e-08 62.0 64 50.0
BolC6t35764H Brassica oleracea HOM05D003595 ORTHO05D004132 4.0e-08 62.0 64 50.0
TPR.G1275 Trifolium pratense HOM05D003595 ORTHO05D004132 5.2e-08 61.6 108 37.0
Gorai.001G138100 Gossypium raimondii HOM05D003595 ORTHO05D004132 6.8e-08 61.2 60 50.0
Lsat_1_v5_gn_6_48040 Lactuca sativa HOM05D003595 ORTHO05D004132 6.8e-08 61.2 114 36.8
Sed0006790 Sechium edule HOM05D003595 ORTHO05D004132 6.8e-08 61.2 63 50.8
BcaC05g27345 Brassica carinata HOM05D003595 ORTHO05D004132 8.9e-08 60.8 65 49.2
C05p32690 Brassica napus HOM05D003595 ORTHO05D004132 8.9e-08 60.8 65 49.2
BolC5t32002H Brassica oleracea HOM05D003595 ORTHO05D004132 8.9e-08 60.8 65 49.2
Actinidia09350 Actinidia chinensis HOM05D003595 ORTHO05D004132 1.2e-07 60.5 129 33.3
Carub.0001s4023 Capsella rubella HOM05D003595 ORTHO05D004132 1.5e-07 60.1 64 48.4
Atru.chr1.1053 Acer truncatum HOM05D003595 ORTHO05D004132 2.0e-07 59.7 67 43.3
CiPaw.09G036200 Carya illinoinensis HOM05D003595 ORTHO05D004132 3.4e-07 58.9 138 31.2
Glyma.02G303900 Glycine max HOM05D003595 ORTHO05D004132 3.4e-07 58.9 115 33.9
BcaB07g33584 Brassica carinata HOM05D003595 ORTHO05D004132 7.5e-07 57.8 60 50.0
BraA05t21668Z Brassica rapa HOM05D003595 ORTHO05D004132 7.5e-07 57.8 60 51.7
unitig_8.g2994 Utricularia gibba HOM05D003595 ORTHO05D004132 7.5e-07 57.8 68 48.5
BcaB04g20620 Brassica carinata HOM05D003595 ORTHO05D004132 9.8e-07 57.4 60 48.3
BolC1t04289H Brassica oleracea HOM05D003595 ORTHO05D004132 9.8e-07 57.4 64 46.9
A05p19650 Brassica napus HOM05D003595 ORTHO05D004132 1.3e-06 57.0 64 46.9
CARHR096780 Cardamine hirsuta HOM05D003595 ORTHO05D004132 1.3e-06 57.0 60 48.3
BcaB06g26165 Brassica carinata HOM05D003595 ORTHO05D004132 1.7e-06 56.6 60 50.0
BcaC05g28203 Brassica carinata HOM05D003595 ORTHO05D004132 1.7e-06 56.6 60 50.0
A05p27810 Brassica napus HOM05D003595 ORTHO05D004132 1.7e-06 56.6 60 51.7
C05p43150 Brassica napus HOM05D003595 ORTHO05D004132 1.7e-06 56.6 60 50.0
BolC5t33045H Brassica oleracea HOM05D003595 ORTHO05D004132 1.7e-06 56.6 60 50.0
Migut.J01773 Erythranthe guttata HOM05D003595 ORTHO05D004132 1.7e-06 56.6 65 44.6
Aa31LG8G7720 Aethionema arabicum HOM05D003595 ORTHO05D004132 2.9e-06 55.8 59 49.2
BcaB06g26163 Brassica carinata HOM05D003595 ORTHO05D004132 2.9e-06 55.8 60 48.3
C01p43270 Brassica napus HOM05D003595 ORTHO05D004132 2.9e-06 55.8 64 45.3
Thhalv10022277m.g Eutrema salsugineum HOM05D003595 ORTHO05D004132 2.9e-06 55.8 60 48.3
HanXRQChr02g0056211 Helianthus annuus HOM05D003595 ORTHO05D004132 2.9e-06 55.8 132 35.6
arahy.Tifrunner.gnm1.ann1.8RT1B2 Arachis hypogaea HOM05D003595 ORTHO05D004132 3.7e-06 55.5 69 47.8
arahy.Tifrunner.gnm1.ann1.IAUU74 Arachis hypogaea HOM05D003595 ORTHO05D004132 3.7e-06 55.5 69 47.8
COL.COLO4_28188 Corchorus olitorius HOM05D003595 ORTHO05D004132 3.7e-06 55.5 60 50.0
AUR62000124 Chenopodium quinoa HOM05D003595 ORTHO05D004132 6.4e-06 54.7 65 43.1
AUR62019305 Chenopodium quinoa HOM05D003595 ORTHO05D004132 6.4e-06 54.7 65 43.1
TAR633G2295 Trochodendron aralioides HOM05D002383 ORTHO05D016259 6.4e-06 54.7 60 48.3
AT1G51355 Arabidopsis thaliana HOM05D003595 ORTHO05D004132 8.3e-06 54.3 64 46.9


User provided reference genes

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