Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Migut.D00459 Erythranthe guttata HOM05D004940 ORTHO05D007805 0.0e+00 1336.2 644 100.0
MSTRG.18341 Avicennia marina HOM05D004940 ORTHO05D007805 0.0e+00 1190.3 644 86.6
SalBow4G0784 Salvia bowleyana HOM05D004940 ORTHO05D007805 0.0e+00 1173.7 644 86.2
Cc01_g18010 Coffea canephora HOM05D004940 ORTHO05D007805 0.0e+00 1161.7 609 86.5
Migut.N02221 Erythranthe guttata HOM05D004940 ORTHO05D007805 0.0e+00 1161.7 613 86.8
Cpa.g.sc165.41 Carica papaya HOM05D004940 ORTHO05D007805 0.0e+00 1132.1 614 83.7
TAR362G0048 Trochodendron aralioides HOM05D004940 ORTHO05D007805 0.0e+00 1130.5 611 83.8
Actinidia37536 Actinidia chinensis HOM05D004940 ORTHO05D007805 0.0e+00 1127.9 637 81.3
TWI12G0664 Tripterygium wilfordii HOM05D004940 ORTHO05D007805 0.0e+00 1126.3 612 84.0
GSVIVG01028386001 Vitis vinifera HOM05D004940 ORTHO05D007805 0.0e+00 1123.6 609 83.9
Thecc.01G253300 Theobroma cacao HOM05D004940 ORTHO05D007805 0.0e+00 1122.5 614 83.7
CAN.G1270.3 Capsicum annuum HOM05D004940 ORTHO05D007805 0.0e+00 1119.8 613 83.5
vmacro02697 Vaccinium macrocarpon HOM05D004940 ORTHO05D007805 0.0e+00 1119.4 611 83.1
RcHm_v2.0_Chr6g0287291 Rosa chinensis HOM05D004940 ORTHO05D007805 0.0e+00 1115.5 615 83.1
Sopen09g028520 Solanum pennellii HOM05D004940 ORTHO05D007805 0.0e+00 1112.8 609 83.1
Potri.014G195500 Populus trichocarpa HOM05D004940 ORTHO05D007805 0.0e+00 1112.1 611 82.8
MD10G1178900 Malus domestica HOM05D004940 ORTHO05D007805 0.0e+00 1110.5 615 82.8
Lsat_1_v5_gn_8_92240 Lactuca sativa HOM05D004940 ORTHO05D007805 0.0e+00 1108.6 611 82.8
Sabra14G0144700 Salix brachista HOM05D004940 ORTHO05D007805 0.0e+00 1107.8 611 83.1
Lalb_Chr01g0019571 Lupinus albus HOM05D004940 ORTHO05D007805 0.0e+00 1107.0 614 81.9
Sc24g0003690 Simmondsia chinensis HOM05D004940 ORTHO05D007805 0.0e+00 1105.1 613 81.1
Ciclev10019263m.g Citrus clementina HOM05D004940 ORTHO05D007805 0.0e+00 1104.0 612 82.2
arahy.Tifrunner.gnm1.ann1.N1VHSE Arachis hypogaea HOM05D004940 ORTHO05D007805 0.0e+00 1102.4 612 81.0
Medtr7g098010 Medicago truncatula HOM05D004940 ORTHO05D007805 0.0e+00 1102.4 614 82.6
Dinv16378 Davidia involucrata HOM05D004940 ORTHO05D007805 0.0e+00 1101.3 611 83.3
TPR.G9192 Trifolium pratense HOM05D004940 ORTHO05D007805 0.0e+00 1100.1 614 82.2
Glyma.19G166800 Glycine max HOM05D004940 ORTHO05D007805 0.0e+00 1099.7 611 82.5
MD05G1192400 Malus domestica HOM05D004940 ORTHO05D007805 0.0e+00 1099.0 615 82.0
Aqoxy5G00176 Aquilegia oxysepala HOM05D004940 ORTHO05D007805 0.0e+00 1096.3 610 81.3
Lj1g0003710 Lotus japonicus HOM05D004940 ORTHO05D007805 0.0e+00 1095.1 603 81.8
CANSAT01G2138 Cannabis sativa HOM05D004940 ORTHO05D007805 0.0e+00 1094.3 625 80.8
FAN27G1261 Fragaria x ananassa HOM05D004940 ORTHO05D007805 0.0e+00 1093.6 613 81.1
Nn1g02898 Nelumbo nucifera HOM05D004940 ORTHO05D007805 0.0e+00 1093.2 611 82.5
Psat3g055720 Pisum sativum HOM05D004940 ORTHO05D007805 0.0e+00 1092.0 614 81.6
CiPaw.03G268400 Carya illinoinensis HOM05D004940 ORTHO05D007805 0.0e+00 1091.6 612 80.9
Atru.chr5.1786 Acer truncatum HOM05D004940 ORTHO05D007805 0.0e+00 1090.1 617 81.0
FvH4_2g20890 Fragaria vesca HOM05D004940 ORTHO05D007805 0.0e+00 1089.3 613 81.1
ECA236G4817 Erigeron canadensis HOM05D004940 ORTHO05D007805 0.0e+00 1088.6 610 80.7
HanXRQChr04g0111301 Helianthus annuus HOM05D004940 ORTHO05D007805 0.0e+00 1087.8 611 81.0
Gorai.004G057300 Gossypium raimondii HOM05D004940 ORTHO05D007805 0.0e+00 1086.2 609 82.1
arahy.Tifrunner.gnm1.ann1.YK26R7 Arachis hypogaea HOM05D004940 ORTHO05D007805 0.0e+00 1085.5 612 80.2
Gohir.D08G056200 Gossypium hirsutum HOM05D004940 ORTHO05D007805 0.0e+00 1084.7 609 81.9
EL10Ac7g17647 Beta vulgaris HOM05D004940 ORTHO05D007805 0.0e+00 1081.6 611 80.2
PGR031G0691 Punica granatum HOM05D004940 ORTHO05D007805 0.0e+00 1081.2 601 80.9
Eucgr.A01366 Eucalyptus grandis HOM05D004940 ORTHO05D007805 0.0e+00 1079.3 601 80.5
Sed0008536 Sechium edule HOM05D004940 ORTHO05D007805 0.0e+00 1078.5 616 80.2
CsaV3_3G028180 Cucumis sativus L. HOM05D004940 ORTHO05D007805 4.4e-312 1073.5 615 80.2
Manes.12G035200 Manihot esculenta HOM05D004940 ORTHO05D007805 3.3e-310 1067.8 584 83.4
PSO764G0099 Papaver somniferum HOM05D004940 ORTHO05D007805 3.3e-310 1067.8 611 80.9
Duzib133G0552 Durio zibethinus HOM05D004940 ORTHO05D007805 1.1e-308 1062.8 582 83.5
Phvul.001G163200 Phaseolus vulgaris HOM05D004940 ORTHO05D007805 3.1e-308 1061.2 603 80.6
VMungo1383G2176 Vigna mungo HOM05D004940 ORTHO05D007805 1.0e-306 1056.2 613 79.1
Ca_08723_v3 Cicer arietinum L. HOM05D004940 ORTHO05D007805 3.8e-306 1054.3 587 82.5
Glyma.03G165500 Glycine max HOM05D004940 ORTHO05D007805 4.2e-305 1050.8 584 82.7
MBI07_g18994_MAGBIO Magnolia biondii HOM05D004940 ORTHO05D007805 1.6e-304 1048.9 611 78.7
BolC5t29011H Brassica oleracea HOM05D004940 ORTHO05D007805 2.7e-304 1048.1 613 77.7
THA.LOC104826048 Tarenaya hassleriana HOM05D004940 ORTHO05D007805 2.7e-304 1048.1 634 74.8
QL09p040550 Quercus lobata HOM05D004940 ORTHO05D007805 3.6e-304 1047.7 755 66.8
BraA10t42520Z Brassica rapa HOM05D004940 ORTHO05D007805 1.8e-303 1045.4 613 77.3
BcaC07g42217 Brassica carinata HOM05D004940 ORTHO05D007805 2.3e-303 1045.0 612 77.0
SGA_v2.0_scaffold1G00640 Striga asiatica HOM05D004940 ORTHO05D007805 3.0e-303 1044.6 595 84.2
Sp1g02850 Schrenkiella parvula HOM05D004940 ORTHO05D007805 3.9e-303 1044.3 612 77.1
C08p52520 Brassica napus HOM05D004940 ORTHO05D007805 1.5e-302 1042.3 612 76.8
BolC8t52779H Brassica oleracea HOM05D004940 ORTHO05D007805 1.5e-302 1042.3 612 76.8
A09p68080 Brassica napus HOM05D004940 ORTHO05D007805 2.0e-302 1042.0 612 76.8
BraA09t42143Z Brassica rapa HOM05D004940 ORTHO05D007805 2.0e-302 1042.0 612 76.8
Thhalv10007051m.g Eutrema salsugineum HOM05D004940 ORTHO05D007805 2.6e-302 1041.6 612 77.6
DCAR_000927 Daucus carota HOM05D004940 ORTHO05D007805 5.7e-302 1040.4 609 77.7
CARHR003360 Cardamine hirsuta HOM05D004940 ORTHO05D007805 2.2e-301 1038.5 612 77.5
C05p02330 Brassica napus HOM05D004940 ORTHO05D007805 3.7e-301 1037.7 640 74.4
Rhsim13G0038600 Rhododendron simsii HOM05D004940 ORTHO05D007805 3.7e-301 1037.7 823 62.0
CSS0021031 Camellia sinensis var. sinensis HOM05D004940 ORTHO05D007805 6.3e-301 1036.9 611 79.1
AT1G04010 Arabidopsis thaliana HOM05D004940 ORTHO05D007805 1.1e-300 1036.2 612 77.1
Carub.0001s0317 Capsella rubella HOM05D004940 ORTHO05D007805 1.4e-300 1035.8 612 77.3
BcaC05g24475 Brassica carinata HOM05D004940 ORTHO05D007805 7.0e-300 1033.5 595 78.2
Aa31LG1G20810 Aethionema arabicum HOM05D004940 ORTHO05D007805 9.1e-300 1033.1 611 76.8
Haze_24676 Corylus avellana HOM05D004940 ORTHO05D007805 2.0e-299 1031.9 665 72.3
A10p02520 Brassica napus HOM05D004940 ORTHO05D007805 4.5e-299 1030.8 640 74.1
FAN20G1599 Fragaria x ananassa HOM05D004940 ORTHO05D007805 5.0e-298 1027.3 722 68.4
Zm00001eb258680 Zea mays HOM05D004940 ORTHO05D007805 3.6e-296 1021.1 614 76.2
Solyc09g072710.4 Solanum lycopersicum HOM05D004940 ORTHO05D007805 1.6e-288 995.7 610 76.1
FAN15G2608 Fragaria x ananassa HOM05D004940 ORTHO05D007805 6.8e-287 990.3 650 72.3
ClCG07G001250 Citrullus lanatus HOM05D004940 ORTHO05D007805 2.0e-286 988.8 623 75.0
TWI75G1829 Tripterygium wilfordii HOM05D004940 ORTHO05D007805 3.4e-286 988.0 556 81.3
FAN24G3024 Fragaria x ananassa HOM05D004940 ORTHO05D007805 1.2e-283 979.5 650 71.7
Manes.13G037500 Manihot esculenta HOM05D004940 ORTHO05D007805 1.3e-277 959.5 559 80.1
ATR0736G200 Amborella trichopoda HOM05D004940 ORTHO05D007805 3.7e-277 958.0 572 76.2
Oeu028892.3 Olea europaea HOM05D004940 ORTHO05D007805 9.2e-276 953.4 571 78.6
COL.COLO4_36581 Corchorus olitorius HOM05D004940 ORTHO05D007805 1.9e-273 945.7 523 83.0
Prupe.8G218700 Prunus persica HOM05D004940 ORTHO05D007805 2.6e-270 935.3 521 82.9
Lj1C71G15 Lonicera japonica HOM05D004940 ORTHO05D007805 6.4e-269 930.6 527 80.6
Peaxi162Scf00415g00416 Petunia axillaris HOM05D004940 ORTHO05D007805 1.0e-266 923.3 581 75.2
Hund05470 Selenicereus undatus HOM05D004940 ORTHO05D007805 4.3e-265 917.9 585 73.7
AL1G13620 Arabidopsis lyrata HOM05D004940 ORTHO05D007805 6.2e-264 914.1 549 76.0
Gohir.A08G045700 Gossypium hirsutum HOM05D004940 ORTHO05D007805 4.0e-263 911.4 518 81.7
Nitab4.5_0002389g0100 Nicotiana tabacum HOM05D004940 ORTHO05D007805 3.2e-260 901.7 622 70.1
AUR62008763 Chenopodium quinoa HOM05D004940 ORTHO05D007805 4.6e-259 897.9 608 69.9
AUR62025474 Chenopodium quinoa HOM05D004940 ORTHO05D007805 6.2e-256 887.5 618 68.8
Nitab4.5_0003295g0190 Nicotiana tabacum HOM05D004940 ORTHO05D007805 7.1e-244 847.4 622 66.4
AagrBONN_evm.TU.Sc2ySwM_344.1925 Anthoceros agrestis HOM05D004940 ORTHO05D007805 9.0e-239 830.5 617 62.4
Mapoly0023s0070 Marchantia polymorpha HOM05D004940 ORTHO05D007805 2.2e-237 825.9 612 62.6
SMO137G0189 Selaginella moellendorffii HOM05D004940 ORTHO05D007805 5.4e-228 794.7 603 60.0
DCAR_018506 Daucus carota HOM05D004940 ORTHO05D007805 8.7e-226 787.3 491 73.3
SMO137G0113 Selaginella moellendorffii HOM05D004940 ORTHO05D007805 9.0e-223 777.3 612 59.0
Pp3c16_20320 Physcomitrium patens HOM05D004940 ORTHO05D007805 2.0e-214 749.6 556 62.9
MELO3C012862.2 Cucumis melo HOM05D004940 ORTHO05D007805 2.3e-210 736.1 431 79.1
HPP92_012807 Vanilla planifolia HOM05D004940 ORTHO05D007805 1.5e-198 696.8 410 77.6
CDE01G0548 Ceratophyllum demersum HOM05D004940 ORTHO05D007805 1.1e-188 664.1 462 68.8
Duzib138G0347 Durio zibethinus HOM05D004940 ORTHO05D007805 4.8e-184 648.7 381 78.2
Atru.chr5.1796 Acer truncatum HOM05D004940 ORTHO05D007805 7.5e-177 624.8 353 81.9
SHI09716 Sapria himalayana HOM05D004940 ORTHO05D000023 3.7e-176 622.5 418 70.1
PSO832G3423 Papaver somniferum HOM05D004940 ORTHO05D007805 1.4e-130 471.1 246 85.0
Lj1A78G31 Lonicera japonica HOM05D004940 ORTHO05D007805 6.8e-130 468.8 467 53.3
PSO832G4005 Papaver somniferum HOM05D004940 ORTHO05D007805 3.9e-117 426.4 239 83.3
Atru.chr5.1783 Acer truncatum HOM05D004940 ORTHO05D007805 2.6e-89 334.0 202 76.7
SEGI_08888 Sequoiadendron giganteum HOM05D004940 ORTHO05D007805 2.0e-84 317.8 188 75.0
PGSC0003DMG401024284 Solanum tuberosum HOM05D004940 ORTHO05D007805 1.4e-79 301.6 147 91.8
SalBow5G2300 Salvia bowleyana HOM05D004940 ORTHO05D007805 2.6e-73 280.8 178 74.7
Lj1C79T2 Lonicera japonica HOM05D004940 ORTHO05D007805 3.6e-62 243.8 130 85.4
HPP92_012808 Vanilla planifolia HOM05D004940 ORTHO05D007805 3.6e-62 243.8 122 87.7
SMO181G0022 Selaginella moellendorffii HOM05D004940 ORTHO05D037547 5.0e-48 196.8 340 35.9
Lsat_1_v5_gn_2_111960 Lactuca sativa HOM05D004940 ORTHO05D007805 1.0e-45 189.1 105 81.0
Os02g0814100 Oryza sativa ssp. japonica HOM05D004940 ORTHO05D007805 1.8e-45 188.3 155 58.1
SEGI_20278 Sequoiadendron giganteum HOM05D004940 ORTHO05D007805 5.7e-44 183.3 160 53.8
SHI09711 Sapria himalayana HOM05D004940 ORTHO05D018819 3.2e-42 177.6 121 66.1
Zm00001eb037190 Zea mays HOM05D004940 ORTHO05D007805 4.1e-42 177.2 83 91.6
SEGI_40684 Sequoiadendron giganteum HOM05D004940 ORTHO05D007805 8.3e-35 152.9 103 74.8
CSS0009798 Camellia sinensis var. sinensis HOM05D004940 ORTHO05D022117 1.2e-33 149.1 87 75.9
CSS0004187 Camellia sinensis var. sinensis HOM05D004940 ORTHO05D022117 4.3e-31 140.6 87 73.6
CSS0032793 Camellia sinensis var. sinensis HOM05D004940 ORTHO05D022117 4.3e-31 140.6 87 73.6
CSS0034361 Camellia sinensis var. sinensis HOM05D004940 ORTHO05D018819 3.1e-29 134.4 149 51.7
Lj1C79G2 Lonicera japonica HOM05D004940 ORTHO05D003385 8.9e-29 132.9 66 89.4
MCO05G688 Micromonas commoda HOM05D001762 ORTHO05D001774 7.5e-28 129.8 211 34.6
Cfa024946 Carpinus fangiana HOM05D001762 ORTHO05D001774 8.6e-24 116.3 410 26.8
SEGI_20843 Sequoiadendron giganteum HOM05D004940 ORTHO05D007805 4.3e-23 114.0 82 72.0
Cre02.g106400 Chlamydomonas reinhardtii HOM05D001762 ORTHO05D001774 4.7e-22 110.5 263 27.8
VMungo0251G2796 Vigna mungo HOM05D004940 ORTHO05D007805 8.9e-21 106.3 51 88.2
Lj1C79T15 Lonicera japonica HOM05D004940 ORTHO05D048414 3.4e-20 104.4 53 88.7
CSS0008401 Camellia sinensis var. sinensis HOM05D004940 ORTHO05D018819 1.4e-18 99.0 56 82.1
CSS0049470 Camellia sinensis var. sinensis HOM05D004940 ORTHO05D018819 1.4e-18 99.0 56 82.1
PRCOL_00006657 Prasinoderma coloniale HOM05D001762 ORTHO05D001774 2.4e-18 98.2 208 26.0
CSS0033490 Camellia sinensis var. sinensis HOM05D004940 ORTHO05D018819 3.2e-18 97.8 56 82.1
CSS0050068 Camellia sinensis var. sinensis HOM05D004940 ORTHO05D022117 1.6e-17 95.5 79 58.2
SMO181G0033 Selaginella moellendorffii HOM05D004940 ORTHO05D037547 2.7e-17 94.7 210 33.3
CSS0026527 Camellia sinensis var. sinensis HOM05D004940 ORTHO05D018819 4.6e-17 94.0 56 78.6
Phvul.008G143913 Phaseolus vulgaris HOM05D004940 ORTHO05D022117 6.0e-17 93.6 79 58.2
CSS0024627 Camellia sinensis var. sinensis HOM05D004940 ORTHO05D018819 2.1e-14 85.1 51 80.4
CSS0048666 Camellia sinensis var. sinensis HOM05D004940 ORTHO05D018819 2.1e-14 85.1 51 80.4
SEGI_00315 Sequoiadendron giganteum HOM05D004940 ORTHO05D048414 4.7e-14 84.0 53 69.8
MBI13_g29642_MAGBIO Magnolia biondii HOM05D004940 ORTHO05D001085 5.4e-10 70.5 32 81.2
CSS0023541 Camellia sinensis var. sinensis HOM05D006117 ORTHO05D007996 5.1e-08 63.9 259 25.5
CSS0008179 Camellia sinensis var. sinensis HOM05D006117 ORTHO05D007996 6.6e-08 63.5 259 25.5
Eucgr.F02231 Eucalyptus grandis HOM05D006117 ORTHO05D007996 5.6e-07 60.5 262 24.4


User provided reference genes

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