Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Migut.D00410 Erythranthe guttata HOM05D001920 ORTHO05D005408 0.0e+00 1156.4 589 100.0
SalBow4G2367 Salvia bowleyana HOM05D001920 ORTHO05D005408 7.1e-283 976.9 590 84.4
MSTRG.14078 Avicennia marina HOM05D001920 ORTHO05D005408 1.4e-270 936.0 578 83.0
Cc08_g10930 Coffea canephora HOM05D001920 ORTHO05D005408 4.0e-270 934.5 564 83.3
Migut.E01586 Erythranthe guttata HOM05D001920 ORTHO05D005408 1.5e-269 932.6 578 83.4
CSS0047067 Camellia sinensis var. sinensis HOM05D001920 ORTHO05D005408 2.6e-269 931.8 574 82.2
Duzib187G1306 Durio zibethinus HOM05D001920 ORTHO05D005408 3.5e-266 921.4 551 83.5
HanXRQChr10g0309741 Helianthus annuus HOM05D001920 ORTHO05D005408 7.9e-266 920.2 567 80.4
Actinidia29326 Actinidia chinensis HOM05D001920 ORTHO05D005408 6.7e-265 917.1 583 80.3
Atru.chr7.1932 Acer truncatum HOM05D001920 ORTHO05D005408 8.7e-265 916.8 559 81.9
Peaxi162Scf00694g00218 Petunia axillaris HOM05D001920 ORTHO05D005408 8.7e-265 916.8 564 82.3
Ciclev10007867m.g Citrus clementina HOM05D001920 ORTHO05D005408 4.3e-264 914.4 556 82.2
vmacro07770 Vaccinium macrocarpon HOM05D001920 ORTHO05D005408 1.3e-263 912.9 573 80.6
CiPaw.15G036600 Carya illinoinensis HOM05D001920 ORTHO05D005408 6.2e-263 910.6 561 81.6
Haze_18151 Corylus avellana HOM05D001920 ORTHO05D005408 1.1e-262 909.8 603 77.1
Potri.006G225500 Populus trichocarpa HOM05D001920 ORTHO05D005408 1.4e-262 909.4 562 81.7
Cfa017979 Carpinus fangiana HOM05D001920 ORTHO05D005408 1.8e-262 909.1 518 85.7
Nitab4.5_0004053g0020 Nicotiana tabacum HOM05D001920 ORTHO05D005408 1.2e-261 906.4 566 81.1
COL.COLO4_21094 Corchorus olitorius HOM05D001920 ORTHO05D005408 1.5e-261 906.0 561 81.1
RhsimUnG0209800 Rhododendron simsii HOM05D001920 ORTHO05D005408 2.0e-261 905.6 573 80.3
Gohir.D08G268800 Gossypium hirsutum HOM05D001920 ORTHO05D005408 3.4e-261 904.8 570 80.2
Gorai.004G286500 Gossypium raimondii HOM05D001920 ORTHO05D005408 5.8e-261 904.0 570 80.0
TAR626G1364 Trochodendron aralioides HOM05D001920 ORTHO05D005408 5.8e-261 904.0 560 80.2
Dinv12437 Davidia involucrata HOM05D001920 ORTHO05D005408 1.7e-260 902.5 569 81.4
PGSC0003DMG400006851 Solanum tuberosum HOM05D001920 ORTHO05D005408 2.2e-260 902.1 561 80.7
CsaV3_4G035800 Cucumis sativus L. HOM05D001920 ORTHO05D005408 4.9e-260 901.0 581 79.0
Gohir.A08G247700 Gossypium hirsutum HOM05D001920 ORTHO05D005408 6.4e-260 900.6 559 80.9
Thecc.09G057700 Theobroma cacao HOM05D001920 ORTHO05D005408 1.9e-259 899.0 558 81.4
CAN.G219.68 Capsicum annuum HOM05D001920 ORTHO05D005408 3.2e-259 898.3 534 82.8
HanXRQChr12g0359101 Helianthus annuus HOM05D001920 ORTHO05D005408 7.1e-259 897.1 569 78.2
Lj7A258G43 Lonicera japonica HOM05D001920 ORTHO05D005408 1.2e-258 896.3 567 81.0
CANSAT11G1997 Cannabis sativa HOM05D001920 ORTHO05D005408 2.1e-258 895.6 573 79.6
Solyc01g087650.4 Solanum lycopersicum HOM05D001920 ORTHO05D005408 7.9e-258 893.6 563 80.1
Prupe.1G408800 Prunus persica HOM05D001920 ORTHO05D005408 1.3e-257 892.9 517 85.1
Sopen01g034610 Solanum pennellii HOM05D001920 ORTHO05D005408 1.8e-257 892.5 563 79.9
Sp6g31610 Schrenkiella parvula HOM05D001920 ORTHO05D005408 3.0e-257 891.7 563 80.1
Carub.0006s1052 Capsella rubella HOM05D001920 ORTHO05D005408 3.9e-257 891.3 571 78.5
Lalb_Chr22g0356171 Lupinus albus HOM05D001920 ORTHO05D005408 3.9e-257 891.3 564 79.4
Manes.16G082600 Manihot esculenta HOM05D001920 ORTHO05D005408 5.1e-257 891.0 516 85.1
Lsat_1_v5_gn_4_73880 Lactuca sativa HOM05D001920 ORTHO05D005408 6.7e-257 890.6 584 76.9
CARHR201150 Cardamine hirsuta HOM05D001920 ORTHO05D005408 8.7e-257 890.2 567 79.4
AL6G22770 Arabidopsis lyrata HOM05D001920 ORTHO05D005408 1.1e-256 889.8 563 79.4
BcaC03g13404 Brassica carinata HOM05D001920 ORTHO05D005408 2.5e-256 888.6 563 79.6
C02p05530 Brassica napus HOM05D001920 ORTHO05D005408 2.5e-256 888.6 563 79.6
BolC2t06498H Brassica oleracea HOM05D001920 ORTHO05D005408 2.5e-256 888.6 563 79.6
Thhalv10013117m.g Eutrema salsugineum HOM05D001920 ORTHO05D005408 2.5e-256 888.6 563 79.6
ClCG05G018020 Citrullus lanatus HOM05D001920 ORTHO05D005408 4.3e-256 887.9 576 79.3
Sabra06G0174400 Salix brachista HOM05D001920 ORTHO05D005408 5.6e-256 887.5 565 79.8
arahy.Tifrunner.gnm1.ann1.14SSX1 Arachis hypogaea HOM05D001920 ORTHO05D005408 9.6e-256 886.7 542 82.3
arahy.Tifrunner.gnm1.ann1.9L6JUF Arachis hypogaea HOM05D001920 ORTHO05D005408 9.6e-256 886.7 586 77.6
MD15G1055600 Malus domestica HOM05D001920 ORTHO05D005408 2.1e-255 885.6 579 78.1
PGR044G1731 Punica granatum HOM05D001920 ORTHO05D005408 2.1e-255 885.6 528 82.6
Glyma.02G043400 Glycine max HOM05D001920 ORTHO05D005408 2.8e-255 885.2 530 82.8
Ca_03647_v3 Cicer arietinum L. HOM05D001920 ORTHO05D005408 3.7e-255 884.8 573 78.5
A02p01310 Brassica napus HOM05D001920 ORTHO05D005408 6.2e-255 884.0 580 77.6
BraA02t05109Z Brassica rapa HOM05D001920 ORTHO05D005408 6.2e-255 884.0 580 77.6
MD08G1065800 Malus domestica HOM05D001920 ORTHO05D005408 6.2e-255 884.0 574 78.7
Phvul.003G267800 Phaseolus vulgaris HOM05D001920 ORTHO05D005408 6.2e-255 884.0 515 84.3
FAN27G2437 Fragaria x ananassa HOM05D001920 ORTHO05D005408 1.4e-254 882.9 585 76.9
arahy.Tifrunner.gnm1.ann1.UJN8CA Arachis hypogaea HOM05D001920 ORTHO05D005408 2.4e-254 882.1 606 75.1
GSVIVG01035413001 Vitis vinifera HOM05D001920 ORTHO05D005408 2.4e-254 882.1 505 85.5
THA.LOC104799157 Tarenaya hassleriana HOM05D001920 ORTHO05D005408 3.1e-254 881.7 574 77.9
Medtr8g074590 Medicago truncatula HOM05D001920 ORTHO05D005408 4.0e-254 881.3 539 82.0
Glyma.16G120600 Glycine max HOM05D001920 ORTHO05D005408 5.3e-254 880.9 512 84.4
VMungo0251G2102 Vigna mungo HOM05D001920 ORTHO05D005408 5.3e-254 880.9 515 84.3
QL02p000680 Quercus lobata HOM05D001920 ORTHO05D005408 6.9e-254 880.6 566 78.3
Lj4g0027878 Lotus japonicus HOM05D001920 ORTHO05D005408 9.0e-254 880.2 515 84.7
RcHm_v2.0_Chr6g0311281 Rosa chinensis HOM05D001920 ORTHO05D005408 1.5e-253 879.4 591 75.8
BolC3t13123H Brassica oleracea HOM05D001920 ORTHO05D005408 2.0e-253 879.0 563 78.7
C03p06150 Brassica napus HOM05D001920 ORTHO05D005408 2.6e-253 878.6 563 78.9
Hund19436 Selenicereus undatus HOM05D001920 ORTHO05D005408 2.6e-253 878.6 567 78.7
Aqoxy6G00323 Aquilegia oxysepala HOM05D001920 ORTHO05D005408 5.8e-253 877.5 561 77.2
arahy.Tifrunner.gnm1.ann1.RZJX0Q Arachis hypogaea HOM05D001920 ORTHO05D005408 7.6e-253 877.1 586 77.0
Ah.09g228460 Amaranthus hybridus HOM05D001920 ORTHO05D005408 1.3e-252 876.3 564 78.0
FAN20G0594 Fragaria x ananassa HOM05D001920 ORTHO05D005408 1.7e-252 875.9 566 77.9
TWI63G1659 Tripterygium wilfordii HOM05D001920 ORTHO05D005408 3.8e-252 874.8 575 78.3
EL10Ac8g19267 Beta vulgaris HOM05D001920 ORTHO05D005408 4.9e-252 874.4 543 79.2
DCAR_003139 Daucus carota HOM05D001920 ORTHO05D005408 1.9e-251 872.5 588 76.9
unitig_8.g5056 Utricularia gibba HOM05D001920 ORTHO05D005408 7.1e-251 870.5 567 77.4
FvH4_2g31510 Fragaria vesca HOM05D001920 ORTHO05D005408 1.2e-250 869.8 564 77.7
Psat4g103240 Pisum sativum HOM05D001920 ORTHO05D005408 1.2e-250 869.8 578 77.2
FAN15G2558 Fragaria x ananassa HOM05D001920 ORTHO05D005408 3.5e-250 868.2 577 76.6
Aa31LG3G15240 Aethionema arabicum HOM05D001920 ORTHO05D005408 7.9e-250 867.1 535 80.7
RhsimUnG0018300 Rhododendron simsii HOM05D001920 ORTHO05D005408 3.9e-249 864.8 572 76.7
Sc23g0005750 Simmondsia chinensis HOM05D001920 ORTHO05D005408 1.9e-248 862.4 568 77.8
TWI34G1596 Tripterygium wilfordii HOM05D001920 ORTHO05D005408 1.9e-248 862.4 514 82.7
A03p05350 Brassica napus HOM05D001920 ORTHO05D005408 5.7e-248 860.9 535 79.8
BraA03t09873Z Brassica rapa HOM05D001920 ORTHO05D005408 5.7e-248 860.9 578 75.4
FAN24G1332 Fragaria x ananassa HOM05D001920 ORTHO05D005408 2.1e-247 859.0 576 75.9
AUR62031243 Chenopodium quinoa HOM05D001920 ORTHO05D005408 6.3e-247 857.4 550 78.2
ECA234G0290 Erigeron canadensis HOM05D001920 ORTHO05D005408 1.0e-244 850.1 577 74.9
CDE05G1481 Ceratophyllum demersum HOM05D001920 ORTHO05D005408 3.2e-243 845.1 545 76.5
PSO210G2773 Papaver somniferum HOM05D001920 ORTHO05D005408 1.3e-241 839.7 578 73.4
BcaB01g05437 Brassica carinata HOM05D001920 ORTHO05D005408 1.8e-241 839.3 518 80.3
PSO210G7360 Papaver somniferum HOM05D001920 ORTHO05D005408 3.0e-241 838.6 560 75.0
BcaNung02634 Brassica carinata HOM05D001920 ORTHO05D005408 5.7e-240 834.3 571 75.7
AUR62027456 Chenopodium quinoa HOM05D001920 ORTHO05D005408 9.7e-240 833.6 549 76.7
MELO3C016885.2 Cucumis melo HOM05D001920 ORTHO05D005408 9.7e-240 833.6 581 74.9
Actinidia03557 Actinidia chinensis HOM05D001920 ORTHO05D005408 1.7e-236 822.8 495 82.4
ATR0686G037 Amborella trichopoda HOM05D001920 ORTHO05D005408 8.5e-236 820.5 571 74.4
AT5G11980 Arabidopsis thaliana HOM05D001920 ORTHO05D005408 3.2e-235 818.5 478 85.4
Nn8g38775 Nelumbo nucifera HOM05D001920 ORTHO05D005408 4.4e-232 808.1 463 85.7
HPP92_005529 Vanilla planifolia HOM05D001920 ORTHO05D005408 5.2e-225 784.6 543 72.0
Eucgr.C03063 Eucalyptus grandis HOM05D001920 ORTHO05D005408 2.4e-222 775.8 528 74.1
Os12g0538300 Oryza sativa ssp. japonica HOM05D001920 ORTHO05D005408 7.0e-222 774.2 519 74.2
Cpa.g.sc222.19 Carica papaya HOM05D001920 ORTHO05D005408 4.5e-221 771.5 562 72.2
Zm00001eb006920 Zea mays HOM05D001920 ORTHO05D005408 7.7e-221 770.8 514 73.3
Hma1.2p1_0077F.1_g039730 Hydrangea macrophylla HOM05D001920 ORTHO05D005408 3.6e-218 761.9 485 79.6
Zm00001eb401360 Zea mays HOM05D001920 ORTHO05D005408 2.0e-216 756.1 581 66.6
SGA_v2.0_scaffold169G38703 Striga asiatica HOM05D001920 ORTHO05D005408 2.2e-207 726.1 591 68.2
TPR.G14979 Trifolium pratense HOM05D001920 ORTHO05D005408 1.1e-206 723.8 405 88.1
Sed0005880 Sechium edule HOM05D001920 ORTHO05D005408 9.1e-206 720.7 463 77.8
Sed0005137 Sechium edule HOM05D001920 ORTHO05D005408 2.8e-202 709.1 462 77.5
Hma1.2p1_0196F.1_g084800 Hydrangea macrophylla HOM05D001920 ORTHO05D005408 1.8e-201 706.4 545 69.2
MBI18_g38862_MAGBIO Magnolia biondii HOM05D001920 ORTHO05D005408 6.8e-201 704.5 546 67.2
Mapoly0087s0038 Marchantia polymorpha HOM05D001920 ORTHO05D005408 2.4e-198 696.0 573 62.3
Nitab4.5_0000707g0110 Nicotiana tabacum HOM05D001920 ORTHO05D005408 2.8e-194 682.6 569 65.7
Oeu003998.1 Olea europaea HOM05D001920 ORTHO05D005408 4.4e-192 675.2 581 67.0
Pp3c10_11790 Physcomitrium patens HOM05D001920 ORTHO05D005408 4.4e-192 675.2 595 59.0
SHI18715 Sapria himalayana HOM05D001920 ORTHO05D005408 2.3e-185 652.9 460 70.0
SMO356G0672 Selaginella moellendorffii HOM05D001920 ORTHO05D005408 1.5e-184 650.2 512 64.3
CBR_g34170 Chara braunii HOM05D001920 ORTHO05D005408 3.0e-180 636.0 489 62.2
SGA_v2.0_scaffold163G38013 Striga asiatica HOM05D001920 ORTHO05D005408 2.1e-170 603.2 357 88.0
Lj7C259T3 Lonicera japonica HOM05D001920 ORTHO05D005408 1.5e-168 597.0 318 90.9
MBI05_g36626_MAGBIO Magnolia biondii HOM05D001920 ORTHO05D005408 1.9e-166 590.1 546 59.0
Lj7C264G4 Lonicera japonica HOM05D001920 ORTHO05D005408 2.7e-165 586.3 503 62.2
RcHm_v2.0_Chr4g0442191 Rosa chinensis HOM05D001920 ORTHO05D005408 4.4e-160 568.9 522 58.4
Pp3c2_14420 Physcomitrium patens HOM05D001920 ORTHO05D005408 7.8e-157 558.1 462 61.3
FAN12G3829 Fragaria x ananassa HOM05D001920 ORTHO05D005408 2.8e-154 549.7 496 58.7
FvH4_4g33140 Fragaria vesca HOM05D001920 ORTHO05D005408 3.6e-154 549.3 496 58.9
FAN07G1923 Fragaria x ananassa HOM05D001920 ORTHO05D005408 3.6e-154 549.3 492 58.5
AagrBONN_evm.TU.Sc2ySwM_228.4615 Anthoceros agrestis HOM05D001920 ORTHO05D005408 7.6e-136 488.4 331 70.7
Oeu004630.1 Olea europaea HOM05D001920 ORTHO05D005408 1.5e-131 474.2 597 50.1
FAN22G0219 Fragaria x ananassa HOM05D001920 ORTHO05D005408 3.7e-130 469.5 493 52.5
PRCOL_00001520 Prasinoderma coloniale HOM05D001920 ORTHO05D005408 6.7e-124 448.7 518 46.1
Cre10.g439650 Chlamydomonas reinhardtii HOM05D001920 ORTHO05D005408 5.0e-103 379.4 528 39.8
FAN17G1736 Fragaria x ananassa HOM05D001920 ORTHO05D005408 1.5e-99 367.9 431 49.9
Migut.A00111 Erythranthe guttata HOM05D001920 ORTHO05D005408 1.6e-88 331.3 173 100.0
MCO04G241 Micromonas commoda HOM05D001920 ORTHO05D005408 2.5e-86 323.9 425 40.5
FAN12G2252 Fragaria x ananassa HOM05D001920 ORTHO05D005408 6.8e-84 315.8 346 52.3
Gorai.009G043000 Gossypium raimondii HOM05D001920 ORTHO05D005408 3.5e-72 276.9 561 37.4
CDE05G0360 Ceratophyllum demersum HOM05D001920 ORTHO05D005408 3.1e-68 263.8 186 66.7
CDE05G1717 Ceratophyllum demersum HOM05D001920 ORTHO05D005408 3.1e-60 237.3 256 50.8
MBI13_g05979_MAGBIO Magnolia biondii HOM05D001920 ORTHO05D005408 6.6e-55 219.5 403 38.2
Gohir.D05G042133 Gossypium hirsutum HOM05D001920 ORTHO05D005408 1.4e-52 211.8 504 34.3
SEGI_36171 Sequoiadendron giganteum HOM05D001920 ORTHO05D000001 9.2e-49 199.1 129 77.5
arahy.Tifrunner.gnm1.ann1.NPWH83 Arachis hypogaea HOM05D001920 ORTHO05D005408 6.2e-45 186.4 105 85.7
MSTRG.25967 Avicennia marina HOM05D001920 ORTHO05D005408 1.6e-40 171.8 106 84.9
Lj7A264G15 Lonicera japonica HOM05D001920 ORTHO05D005408 2.5e-38 164.5 119 75.6
Eucgr.L03492 Eucalyptus grandis HOM05D001920 ORTHO05D005408 5.4e-33 146.7 148 52.0
BcaNung02635 Brassica carinata HOM05D001920 ORTHO05D005408 3.9e-31 140.6 80 85.0
Hma1.2p1_0196F.1_g084820 Hydrangea macrophylla HOM05D001920 ORTHO05D005408 1.6e-29 135.2 97 75.3
TPR.G36194 Trifolium pratense HOM05D001920 ORTHO05D005408 3.1e-28 131.0 92 78.3
Zm00001eb014540 Zea mays HOM05D000282 ORTHO05D000272 5.7e-22 110.2 93 62.4
BcaC05g26027 Brassica carinata HOM05D001920 ORTHO05D024365 9.0e-20 102.8 71 74.6
TPR.G748 Trifolium pratense HOM05D001920 ORTHO05D005408 9.0e-20 102.8 65 76.9
TPR.G36118 Trifolium pratense HOM05D001920 ORTHO05D005408 7.1e-17 93.2 54 87.0
SGA_v2.0_scaffold26G11215 Striga asiatica HOM05D001920 ORTHO05D024365 9.3e-17 92.8 50 92.0
TPR.G14973 Trifolium pratense HOM05D001920 ORTHO05D005408 3.0e-15 87.8 91 44.0
MBI17_g36954_MAGBIO Magnolia biondii HOM05D001920 ORTHO05D012920 8.7e-15 86.3 58 74.1
C05p19930 Brassica napus HOM05D001920 ORTHO05D024365 8.2e-13 79.7 53 73.6
C06p01410 Brassica napus HOM05D001920 ORTHO05D024365 9.0e-12 76.3 98 48.0
ECA232G0588 Erigeron canadensis HOM05D000006 ORTHO05D000001 1.5e-11 75.5 49 75.5
BolC5t30691H Brassica oleracea HOM05D001920 ORTHO05D024365 8.5e-10 69.7 43 76.7
Lsat_1_v5_gn_6_51140 Lactuca sativa HOM05D001920 ORTHO05D233273 1.6e-08 65.5 52 63.5
Lsat_1_v5_gn_1_94900 Lactuca sativa HOM05D001920 ORTHO05D231497 1.4e-07 62.4 52 59.6
ATR0009G028 Amborella trichopoda HOM05D001920 ORTHO05D005408 6.7e-07 60.1 46 56.5
ATR0009G024 Amborella trichopoda HOM05D001920 ORTHO05D005408 1.5e-06 58.9 70 45.7
Lj7A259T19 Lonicera japonica HOM05D001920 ORTHO05D235283 4.3e-06 57.4 153 32.7


User provided reference genes

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