Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Migut.D00294 Erythranthe guttata HOM05D005096 ORTHO05D006566 0.0e+00 1740.3 920 100.0
MSTRG.21562 Avicennia marina HOM05D005096 ORTHO05D006566 0.0e+00 1355.5 920 77.3
SalBow4G0282 Salvia bowleyana HOM05D005096 ORTHO05D006566 0.0e+00 1348.6 922 77.0
Oeu022870.1 Olea europaea HOM05D005096 ORTHO05D006566 0.0e+00 1262.3 930 71.8
SGA_v2.0_scaffold1G00471 Striga asiatica HOM05D005096 ORTHO05D006566 0.0e+00 1138.6 920 68.5
Dinv32937 Davidia involucrata HOM05D005096 ORTHO05D006566 0.0e+00 1119.0 930 65.3
unitig_0.g1141 Utricularia gibba HOM05D005096 ORTHO05D003974 0.0e+00 1098.2 918 64.5
Lj2A1173G9 Lonicera japonica HOM05D005096 ORTHO05D006566 0.0e+00 1091.3 868 66.5
CSS0045500 Camellia sinensis var. sinensis HOM05D005096 ORTHO05D006566 0.0e+00 1090.9 916 64.3
Actinidia00750 Actinidia chinensis HOM05D005096 ORTHO05D006566 0.0e+00 1089.3 932 64.1
Actinidia09139 Actinidia chinensis HOM05D005096 ORTHO05D006566 0.0e+00 1079.3 933 63.2
vmacro02569 Vaccinium macrocarpon HOM05D005096 ORTHO05D006566 8.4e-307 1057.0 889 63.7
Rhsim13G0024600 Rhododendron simsii HOM05D005096 ORTHO05D006566 2.7e-305 1052.0 928 62.5
Nitab4.5_0008435g0030 Nicotiana tabacum HOM05D005096 ORTHO05D006566 1.3e-304 1049.7 909 61.9
Nitab4.5_0000458g0050 Nicotiana tabacum HOM05D005096 ORTHO05D006566 2.3e-304 1048.9 884 63.0
Peaxi162Scf01607g00116 Petunia axillaris HOM05D005096 ORTHO05D006566 5.1e-304 1047.7 928 61.9
GSVIVG01011085001 Vitis vinifera HOM05D005096 ORTHO05D006566 1.9e-303 1045.8 882 62.2
Sopen09g026860 Solanum pennellii HOM05D005096 ORTHO05D006566 5.8e-300 1034.2 909 62.0
Atru.chr5.1434 Acer truncatum HOM05D005096 ORTHO05D006566 3.8e-299 1031.6 917 60.3
Prupe.8G241300 Prunus persica HOM05D005096 ORTHO05D006566 1.4e-298 1029.6 914 61.5
Duzib138G0773 Durio zibethinus HOM05D005096 ORTHO05D006566 6.7e-296 1020.8 915 60.3
TAR633G0362 Trochodendron aralioides HOM05D005096 ORTHO05D006566 6.7e-296 1020.8 934 60.4
Cfa006136 Carpinus fangiana HOM05D005096 ORTHO05D006566 2.8e-294 1015.4 873 61.9
Sabra05G0159300 Salix brachista HOM05D005096 ORTHO05D006566 4.8e-294 1014.6 918 59.8
COL.COLO4_09099 Corchorus olitorius HOM05D005096 ORTHO05D006566 9.0e-293 1010.4 912 59.8
Lsat_1_v5_gn_9_3760 Lactuca sativa HOM05D005096 ORTHO05D006566 5.8e-292 1007.7 870 61.8
QL12p021914 Quercus lobata HOM05D005096 ORTHO05D006566 1.0e-291 1006.9 917 59.3
Manes.05G076137 Manihot esculenta HOM05D005096 ORTHO05D006566 6.5e-291 1004.2 911 58.6
Haze_04712 Corylus avellana HOM05D005096 ORTHO05D006566 1.9e-290 1002.7 962 57.5
Potri.005G209200 Populus trichocarpa HOM05D005096 ORTHO05D006566 1.9e-290 1002.7 927 58.0
RcHm_v2.0_Chr6g0291071 Rosa chinensis HOM05D005096 ORTHO05D006566 2.7e-289 998.8 918 59.0
Thecc.01G279600 Theobroma cacao HOM05D005096 ORTHO05D006566 2.7e-289 998.8 930 59.5
Cc01_g19500 Coffea canephora HOM05D005096 ORTHO05D006566 4.6e-289 998.0 871 61.3
HanXRQChr10g0282661 Helianthus annuus HOM05D005096 ORTHO05D006566 4.6e-289 998.0 874 60.6
CiPaw.07G091400 Carya illinoinensis HOM05D005096 ORTHO05D006566 1.3e-288 996.5 926 58.9
Aqoxy2G03326 Aquilegia oxysepala HOM05D005096 ORTHO05D006566 5.1e-288 994.6 879 59.6
FAN20G2556 Fragaria x ananassa HOM05D005096 ORTHO05D006566 5.1e-288 994.6 913 58.6
TWI23G0916 Tripterygium wilfordii HOM05D005096 ORTHO05D006566 6.7e-288 994.2 921 59.3
FAN27G2515 Fragaria x ananassa HOM05D005096 ORTHO05D006566 1.1e-287 993.4 913 58.4
Ciclev10023868m.g Citrus clementina HOM05D005096 ORTHO05D006566 1.5e-287 993.0 883 59.9
DCAR_002736 Daucus carota HOM05D005096 ORTHO05D006566 1.5e-287 993.0 926 58.7
FvH4_2g23600 Fragaria vesca HOM05D005096 ORTHO05D006566 2.5e-287 992.3 913 58.5
FAN15G1882 Fragaria x ananassa HOM05D005096 ORTHO05D006566 7.4e-287 990.7 915 58.3
MD11G1286100 Malus domestica HOM05D005096 ORTHO05D006566 9.7e-287 990.3 916 58.7
CAN.G242.2 Capsicum annuum HOM05D005096 ORTHO05D006566 1.2e-284 983.4 870 61.4
ECA247G0546 Erigeron canadensis HOM05D005096 ORTHO05D006566 3.4e-284 981.9 901 58.8
CANSAT25G0791 Cannabis sativa HOM05D005096 ORTHO05D006566 1.4e-282 976.5 865 60.6
Gorai.004G080200 Gossypium raimondii HOM05D005096 ORTHO05D006566 4.6e-281 971.5 905 57.9
Duzib133G0542 Durio zibethinus HOM05D005096 ORTHO05D006566 1.3e-278 963.4 869 59.6
CsaV3_6G037120 Cucumis sativus L. HOM05D005096 ORTHO05D006566 1.8e-277 959.5 913 58.3
Hund05342 Selenicereus undatus HOM05D005096 ORTHO05D006566 3.1e-277 958.7 902 57.4
Lj5g0021757 Lotus japonicus HOM05D005096 ORTHO05D006566 3.8e-275 951.8 867 58.9
TPR.G9125 Trifolium pratense HOM05D005096 ORTHO05D006566 8.5e-275 950.7 868 57.8
arahy.Tifrunner.gnm1.ann1.2R7T4K Arachis hypogaea HOM05D005096 ORTHO05D006566 1.1e-274 950.3 918 55.2
Sc05g0004960 Simmondsia chinensis HOM05D005096 ORTHO05D006566 7.2e-274 947.6 906 55.4
Phvul.007G172000 Phaseolus vulgaris HOM05D005096 ORTHO05D006566 4.7e-273 944.9 880 57.6
ClCG07G000240 Citrullus lanatus HOM05D005096 ORTHO05D006566 6.1e-273 944.5 872 59.2
Medtr1g072270 Medicago truncatula HOM05D005096 ORTHO05D006566 7.4e-271 937.6 871 57.4
EL10Ac7g17230 Beta vulgaris HOM05D005096 ORTHO05D006566 2.2e-270 936.0 936 54.3
Gohir.D08G075900 Gossypium hirsutum HOM05D005096 ORTHO05D006566 2.8e-270 935.6 905 56.5
Ca_09758_v3 Cicer arietinum L. HOM05D005096 ORTHO05D006566 3.7e-270 935.3 866 56.8
VMungo0720G0024 Vigna mungo HOM05D005096 ORTHO05D006566 4.1e-269 931.8 879 57.5
Glyma.02G147400 Glycine max HOM05D005096 ORTHO05D006566 7.0e-269 931.0 921 55.8
FAN24G2260 Fragaria x ananassa HOM05D005096 ORTHO05D006566 1.0e-267 927.2 913 55.6
Glyma.10G026400 Glycine max HOM05D005096 ORTHO05D006566 1.0e-267 927.2 921 54.9
Ah.15g091940 Amaranthus hybridus HOM05D005096 ORTHO05D006566 8.5e-267 924.1 903 55.8
arahy.Tifrunner.gnm1.ann1.TN9YNV Arachis hypogaea HOM05D005096 ORTHO05D006566 1.2e-265 920.2 930 53.4
Sed0025205 Sechium edule HOM05D005096 ORTHO05D006566 1.6e-265 919.8 904 55.8
MBI19_g21295_MAGBIO Magnolia biondii HOM05D005096 ORTHO05D006566 1.0e-259 900.6 802 60.8
AL1G12650 Arabidopsis lyrata HOM05D005096 ORTHO05D006566 6.1e-257 891.3 904 54.4
PSO170G0567 Papaver somniferum HOM05D005096 ORTHO05D006566 2.3e-256 889.4 883 56.3
Sp1g02185 Schrenkiella parvula HOM05D005096 ORTHO05D006566 3.0e-256 889.0 927 53.4
ATR0626G051 Amborella trichopoda HOM05D005096 ORTHO05D006566 5.2e-256 888.3 925 53.7
Carub.0001s0230 Capsella rubella HOM05D005096 ORTHO05D006566 8.8e-256 887.5 920 54.2
THA.LOC104801235 Tarenaya hassleriana HOM05D005096 ORTHO05D006566 1.2e-255 887.1 923 54.6
PSO302G0140 Papaver somniferum HOM05D005096 ORTHO05D006566 4.4e-255 885.2 884 56.1
Thhalv10006729m.g Eutrema salsugineum HOM05D005096 ORTHO05D006566 1.7e-254 883.2 903 53.8
CARHR002500 Cardamine hirsuta HOM05D005096 ORTHO05D006566 1.8e-253 879.8 923 53.6
A08p37450 Brassica napus HOM05D005096 ORTHO05D006566 9.1e-253 877.5 923 54.3
BraA08t35643Z Brassica rapa HOM05D005096 ORTHO05D006566 9.1e-253 877.5 923 54.3
C08p00440 Brassica napus HOM05D005096 ORTHO05D006566 4.5e-252 875.2 924 54.1
BolC8t46843H Brassica oleracea HOM05D005096 ORTHO05D006566 6.5e-251 871.3 924 53.6
AUR62036827 Chenopodium quinoa HOM05D005096 ORTHO05D006566 1.6e-249 866.7 948 50.9
Solyc09g065160.4 Solanum lycopersicum HOM05D005096 ORTHO05D006566 2.3e-248 862.8 777 60.5
Aa31LG1G9370 Aethionema arabicum HOM05D005096 ORTHO05D006566 1.2e-247 860.5 909 53.1
CDE06G0317 Ceratophyllum demersum HOM05D005096 ORTHO05D006566 1.0e-243 847.4 858 54.0
PGR119G0033 Punica granatum HOM05D005096 ORTHO05D006566 3.3e-242 842.4 790 58.1
Eucgr.H01482 Eucalyptus grandis HOM05D005096 ORTHO05D006566 5.2e-240 835.1 751 58.2
Psat6g060000 Pisum sativum HOM05D005096 ORTHO05D006566 2.0e-239 833.2 823 55.0
Gohir.A08G067500 Gossypium hirsutum HOM05D005096 ORTHO05D006566 2.6e-239 832.8 774 57.9
AUR62043137 Chenopodium quinoa HOM05D005096 ORTHO05D006566 2.0e-236 823.2 864 52.2
HPP92_012091 Vanilla planifolia HOM05D003650 ORTHO05D004213 5.9e-236 821.6 880 50.9
Hma1.2p1_0257F.1_g103450 Hydrangea macrophylla HOM05D005096 ORTHO05D006566 3.1e-232 809.3 655 66.4
Os05g0390100 Oryza sativa ssp. japonica HOM05D005096 ORTHO05D006566 7.3e-218 761.5 802 52.2
Duzib133G0424 Durio zibethinus HOM05D005096 ORTHO05D006566 3.8e-190 669.5 552 63.2
AT1G03160 Arabidopsis thaliana HOM05D005096 ORTHO05D006566 4.3e-186 656.0 682 54.8
Zm00001eb287190 Zea mays HOM05D005096 ORTHO05D006566 7.6e-183 645.2 641 53.5
Pp3c3_25850 Physcomitrium patens HOM05D005096 ORTHO05D006566 1.3e-182 644.4 919 41.3
Lalb_Chr02g0142781 Lupinus albus HOM05D005096 ORTHO05D006566 1.0e-179 634.8 548 59.5
AagrBONN_evm.TU.Sc2ySwM_228.961 Anthoceros agrestis HOM05D005096 ORTHO05D006566 3.9e-179 632.9 889 42.5
Pp3c10_17390 Physcomitrium patens HOM05D005096 ORTHO05D006566 6.7e-179 632.1 889 40.9
Mapoly0002s0267 Marchantia polymorpha HOM05D005096 ORTHO05D006566 2.1e-177 627.1 884 42.5
MD11G1312200 Malus domestica HOM05D005096 ORTHO05D006566 1.7e-158 564.3 712 49.0
Sabra02G0043400 Salix brachista HOM05D005096 ORTHO05D006566 4.4e-154 549.7 801 43.2
MELO3C014401.2 Cucumis melo HOM05D005096 ORTHO05D006566 1.0e-150 538.5 475 60.4
SMO147G0152 Selaginella moellendorffii HOM05D005096 ORTHO05D006566 3.3e-146 523.5 857 38.0
Migut.D00341 Erythranthe guttata HOM05D005096 ORTHO05D006566 4.2e-133 479.9 458 64.6
MD11G1311700 Malus domestica HOM05D005096 ORTHO05D006566 1.1e-117 428.7 481 52.6
CBR_g4009 Chara braunii HOM05D005096 ORTHO05D006566 5.6e-109 399.8 973 31.9
Hund05386 Selenicereus undatus HOM05D005096 ORTHO05D006566 1.2e-108 398.7 400 55.8
PRCOL_00001755 Prasinoderma coloniale HOM05D005096 ORTHO05D006566 3.7e-105 387.1 922 31.0
MELO3C014400.2 Cucumis melo HOM05D005096 ORTHO05D008790 4.1e-104 383.6 375 56.8
Cre14.g616600 Chlamydomonas reinhardtii HOM05D005096 ORTHO05D006566 3.6e-100 370.5 977 28.9
AUR62043139 Chenopodium quinoa HOM05D005096 ORTHO05D006566 4.1e-96 357.1 347 52.7
MCO02G198 Micromonas commoda HOM05D005096 ORTHO05D006566 1.5e-93 348.6 950 29.3
AUR62043138 Chenopodium quinoa HOM05D005096 ORTHO05D006566 9.9e-90 335.9 428 48.1
Cpa.g.sc52.38 Carica papaya HOM05D005096 ORTHO05D006566 5.4e-88 330.1 309 56.3
Cpa.g.c40412 Carica papaya HOM05D005096 ORTHO05D006566 6.2e-84 316.6 289 56.4
Lalb_Chr02g0142771 Lupinus albus HOM05D005096 ORTHO05D006566 3.8e-73 280.8 335 49.0
Cpa.g.c38803 Carica papaya HOM05D005096 ORTHO05D006566 1.2e-66 259.2 267 52.1
MD11G1311600 Malus domestica HOM05D005096 ORTHO05D006566 2.3e-62 245.0 214 61.7
Hund05340 Selenicereus undatus HOM05D005096 ORTHO05D006566 1.4e-59 235.7 181 68.0
Potri.002G053332 Populus trichocarpa HOM05D005096 ORTHO05D006566 4.5e-58 230.7 256 51.2
SEGI_13636 Sequoiadendron giganteum HOM05D005096 ORTHO05D006566 2.1e-55 221.9 269 45.7
MD11G1311400 Malus domestica HOM05D005096 ORTHO05D006566 1.0e-54 219.5 399 41.9
SEGI_14404 Sequoiadendron giganteum HOM05D005096 ORTHO05D006566 3.2e-48 198.0 389 36.8
Sabra05G0150000 Salix brachista HOM05D005096 ORTHO05D006566 7.9e-47 193.4 160 63.1
Potri.002G053366 Populus trichocarpa HOM05D005096 ORTHO05D006566 4.5e-42 177.6 153 62.7
Cpa.g.c44243 Carica papaya HOM05D005096 ORTHO05D006566 3.6e-39 167.9 131 67.2
arahy.Tifrunner.gnm1.ann1.VTSW9N Arachis hypogaea HOM05D005096 ORTHO05D006566 3.5e-34 151.4 131 59.5
SEGI_20481 Sequoiadendron giganteum HOM05D005096 ORTHO05D006566 3.5e-34 151.4 183 44.3
PGSC0003DMG400012881 Solanum tuberosum HOM05D005096 ORTHO05D006566 4.5e-34 151.0 151 58.3
MD00G1063200 Malus domestica HOM05D005096 ORTHO05D006566 2.5e-32 145.2 125 64.8
Cpa.g.sc370.1 Carica papaya HOM05D005096 ORTHO05D006566 6.7e-30 137.1 109 67.0
Glyma.18G167550 Glycine max HOM05D005096 ORTHO05D006566 8.2e-28 130.2 96 66.7
TAR362G0796 Trochodendron aralioides HOM05D005096 ORTHO05D006566 4.2e-24 117.9 97 66.0
SEGI_37612 Sequoiadendron giganteum HOM05D005096 ORTHO05D006566 1.3e-20 106.3 154 37.0
arahy.Tifrunner.gnm1.ann1.X3UYKF Arachis hypogaea HOM05D005525 ORTHO05D006341 1.9e-16 92.4 108 50.9
Hund05341 Selenicereus undatus HOM05D005096 ORTHO05D006566 3.2e-16 91.7 64 75.0
arahy.Tifrunner.gnm1.ann1.BB9JSJ Arachis hypogaea HOM05D000384 ORTHO05D000468 6.1e-15 87.4 91 52.7
arahy.Tifrunner.gnm1.ann1.K3B567 Arachis hypogaea HOM05D005525 ORTHO05D006341 8.0e-15 87.0 137 40.9
arahy.Tifrunner.gnm1.ann1.Y3S9ZW Arachis hypogaea HOM05D005525 ORTHO05D006341 1.5e-13 82.8 206 33.0
SEGI_24308 Sequoiadendron giganteum HOM05D005096 ORTHO05D006566 9.8e-13 80.1 58 67.2
SEGI_40401 Sequoiadendron giganteum HOM05D005096 ORTHO05D006566 8.3e-12 77.0 104 44.2
Hma1.2p1_0536F.1_g174110 Hydrangea macrophylla HOM05D005096 ORTHO05D006214 1.1e-08 66.6 103 39.8
MD11G1311300 Malus domestica HOM05D005096 ORTHO05D006566 1.4e-06 59.7 76 51.3
arahy.Tifrunner.gnm1.ann1.8W9TWR Arachis hypogaea HOM05D005096 ORTHO05D006566 3.0e-06 58.5 60 48.3
SEGI_20229 Sequoiadendron giganteum HOM05D000300 ORTHO05D385648 8.9e-06 57.0 63 47.6


User provided reference genes

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