Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Migut.D00269 Erythranthe guttata HOM05D004018 ORTHO05D004408 1.2e-292 1009.2 548 100.0
MSTRG.12568 Avicennia marina HOM05D004018 ORTHO05D004408 6.5e-113 412.1 624 46.8
SalBow4G1908 Salvia bowleyana HOM05D004018 ORTHO05D004408 2.2e-108 397.1 606 46.2
Oeu047882.1 Olea europaea HOM05D004018 ORTHO05D004408 5.5e-104 382.5 581 47.2
MSTRG.18219 Avicennia marina HOM05D004018 ORTHO05D004408 3.6e-103 379.8 516 50.0
Oeu028079.1 Olea europaea HOM05D004018 ORTHO05D004408 1.4e-102 377.9 625 44.3
SalBow6G7233 Salvia bowleyana HOM05D004018 ORTHO05D004408 1.0e-94 351.7 611 42.4
Nitab4.5_0001028g0170 Nicotiana tabacum HOM05D004018 ORTHO05D004408 7.2e-88 328.9 623 40.4
Peaxi162Scf00570g00314 Petunia axillaris HOM05D004018 ORTHO05D004408 1.0e-86 325.1 605 40.7
Migut.N02157 Erythranthe guttata HOM05D004018 ORTHO05D004408 6.7e-86 322.4 603 42.3
Actinidia09153 Actinidia chinensis HOM05D004018 ORTHO05D004408 1.5e-85 321.2 667 38.5
Nitab4.5_0011633g0010 Nicotiana tabacum HOM05D004018 ORTHO05D004408 1.5e-85 321.2 641 39.5
SGA_v2.0_scaffold258G45767 Striga asiatica HOM05D004018 ORTHO05D004408 1.3e-84 318.2 663 39.5
Solyc09g064860.3 Solanum lycopersicum HOM05D004018 ORTHO05D004408 1.7e-84 317.8 619 40.9
Sopen09g026560 Solanum pennellii HOM05D004018 ORTHO05D004408 2.8e-84 317.0 620 40.8
TAR365G0909 Trochodendron aralioides HOM05D004018 ORTHO05D004408 8.5e-81 305.4 616 38.6
TAR365G0933 Trochodendron aralioides HOM05D004018 ORTHO05D004408 6.1e-79 299.3 611 38.6
GSVIVG01011103001 Vitis vinifera HOM05D004018 ORTHO05D004408 8.0e-79 298.9 665 36.4
Gohir.A12G005900 Gossypium hirsutum HOM05D004018 ORTHO05D004408 1.8e-78 297.7 623 38.4
Phvul.007G169800 Phaseolus vulgaris HOM05D004018 ORTHO05D004408 5.2e-78 296.2 617 39.7
CSS0042185 Camellia sinensis var. sinensis HOM05D004018 ORTHO05D004408 2.6e-77 293.9 327 56.0
Duzib138G0587 Durio zibethinus HOM05D004018 ORTHO05D004408 2.6e-77 293.9 630 39.2
Carub.0006s3419 Capsella rubella HOM05D004018 ORTHO05D004408 1.3e-76 291.6 559 40.8
Thhalv10007330m.g Eutrema salsugineum HOM05D004018 ORTHO05D004408 1.3e-76 291.6 566 41.3
PSO407G0422 Papaver somniferum HOM05D004018 ORTHO05D004408 1.3e-76 291.6 576 38.4
Potri.014G139000 Populus trichocarpa HOM05D004018 ORTHO05D004408 1.3e-76 291.6 570 39.5
Thecc.01G282900 Theobroma cacao HOM05D004018 ORTHO05D004408 1.3e-76 291.6 640 37.7
Gorai.008G005300 Gossypium raimondii HOM05D004018 ORTHO05D004408 1.7e-76 291.2 627 37.6
Gohir.D12G005400 Gossypium hirsutum HOM05D004018 ORTHO05D004408 2.8e-76 290.4 624 38.6
Gorai.004G215600 Gossypium raimondii HOM05D004018 ORTHO05D004408 2.8e-76 290.4 545 40.0
vmacro02552 Vaccinium macrocarpon HOM05D004018 ORTHO05D004408 3.7e-76 290.0 618 39.6
Rhsim13G0022700 Rhododendron simsii HOM05D000644 ORTHO05D004408 4.8e-76 289.7 597 39.4
VMungo0720G2698 Vigna mungo HOM05D004018 ORTHO05D004408 8.3e-76 288.9 611 37.5
AT4G02880 Arabidopsis thaliana HOM05D004018 ORTHO05D004408 1.4e-75 288.1 579 38.2
Cc01_g19730 Coffea canephora HOM05D004018 ORTHO05D004408 1.4e-75 288.1 623 37.9
AL6G50040 Arabidopsis lyrata HOM05D004018 ORTHO05D004408 1.8e-75 287.7 573 38.2
Cfa006111 Carpinus fangiana HOM05D004018 ORTHO05D004408 1.8e-75 287.7 621 37.7
THA.LOC104801219 Tarenaya hassleriana HOM05D004018 ORTHO05D004408 3.1e-75 287.0 551 39.7
COL.COLO4_09133 Corchorus olitorius HOM05D004018 ORTHO05D004408 1.6e-74 284.6 611 38.3
Nn4g26185 Nelumbo nucifera HOM05D004018 ORTHO05D004408 2.7e-74 283.9 570 38.6
Actinidia00738 Actinidia chinensis HOM05D004018 ORTHO05D004408 3.5e-74 283.5 299 56.2
TAR636G0803 Trochodendron aralioides HOM05D004018 ORTHO05D004408 4.5e-74 283.1 557 38.6
Gohir.A08G185500 Gossypium hirsutum HOM05D004018 ORTHO05D004408 7.7e-74 282.3 604 37.9
Ca_09771_v3 Cicer arietinum L. HOM05D004018 ORTHO05D004408 1.3e-73 281.6 613 36.1
QL12p022414 Quercus lobata HOM05D004018 ORTHO05D004408 1.3e-73 281.6 550 39.6
Hma1.2p1_0628F.1_g191955 Hydrangea macrophylla HOM05D004018 ORTHO05D004408 1.7e-73 281.2 647 37.2
Manes.01G209500 Manihot esculenta HOM05D004018 ORTHO05D004408 3.8e-73 280.0 642 36.0
PSO170G1481 Papaver somniferum HOM05D004018 ORTHO05D004408 3.8e-73 280.0 572 37.1
Sp1g02290 Schrenkiella parvula HOM05D004018 ORTHO05D004408 6.5e-73 279.3 595 37.5
FAN20G3038 Fragaria x ananassa HOM05D000644 ORTHO05D004408 1.5e-72 278.1 576 39.4
MD03G1268400 Malus domestica HOM05D004018 ORTHO05D004408 1.5e-72 278.1 562 40.2
Duzib133G0055 Durio zibethinus HOM05D004018 ORTHO05D004408 2.5e-72 277.3 629 36.9
Sp6g02920 Schrenkiella parvula HOM05D004018 ORTHO05D004408 4.2e-72 276.6 573 38.9
TPR.G1562 Trifolium pratense HOM05D004018 ORTHO05D004408 1.6e-71 274.6 657 34.1
RcHm_v2.0_Chr6g0291481 Rosa chinensis HOM05D004018 ORTHO05D004408 2.7e-71 273.9 592 38.3
C02p39650 Brassica napus HOM05D004018 ORTHO05D004408 3.6e-71 273.5 538 38.8
CARHR251270 Cardamine hirsuta HOM05D004018 ORTHO05D004408 4.7e-71 273.1 557 38.1
TAR633G0135 Trochodendron aralioides HOM05D004018 ORTHO05D004408 8.0e-71 272.3 612 37.3
TWI14G0752 Tripterygium wilfordii HOM05D004018 ORTHO05D004408 1.8e-70 271.2 683 34.3
Carub.0001s0240 Capsella rubella HOM05D004018 ORTHO05D004408 4.0e-70 270.0 563 37.5
FAN24G0467 Fragaria x ananassa HOM05D000644 ORTHO05D004408 4.0e-70 270.0 608 36.2
CANSAT25G1423 Cannabis sativa HOM05D004018 ORTHO05D004408 1.2e-69 268.5 589 36.7
AT1G03290 Arabidopsis thaliana HOM05D004018 ORTHO05D004408 2.0e-69 267.7 580 36.7
BcaC03g16187 Brassica carinata HOM05D004018 ORTHO05D004408 2.0e-69 267.7 538 38.1
Atru.chr5.1370 Acer truncatum HOM05D004018 ORTHO05D004408 4.4e-69 266.5 675 35.3
BraA02t07491Z Brassica rapa HOM05D004018 ORTHO05D004408 4.4e-69 266.5 538 37.9
FAN27G0494 Fragaria x ananassa HOM05D000644 ORTHO05D004408 4.4e-69 266.5 600 37.0
Medtr1g072560 Medicago truncatula HOM05D004018 ORTHO05D004408 5.7e-69 266.2 675 34.8
A02p25020 Brassica napus HOM05D004018 ORTHO05D004408 7.5e-69 265.8 544 37.3
Ciclev10018884m.g Citrus clementina HOM05D004018 ORTHO05D004408 9.8e-69 265.4 333 51.1
Lj2A1177T38 Lonicera japonica HOM05D004018 ORTHO05D004408 1.7e-68 264.6 539 36.9
Psat6g061120 Pisum sativum HOM05D004018 ORTHO05D004408 2.2e-68 264.2 675 34.5
FvH4_2g23870 Fragaria vesca HOM05D004018 ORTHO05D004408 2.8e-68 263.8 610 35.4
Aqoxy2G03257 Aquilegia oxysepala HOM05D004018 ORTHO05D004408 3.7e-68 263.5 606 36.8
Eucgr.H01516 Eucalyptus grandis HOM05D004018 ORTHO05D004408 4.9e-68 263.1 637 35.5
Lalb_Chr21g0306531 Lupinus albus HOM05D004018 ORTHO05D004408 4.9e-68 263.1 606 37.1
Prupe.8G244100 Prunus persica HOM05D004018 ORTHO05D004408 4.1e-67 260.0 597 37.7
AL1G12800 Arabidopsis lyrata HOM05D004018 ORTHO05D004408 5.4e-67 259.6 580 37.1
BcaC05g24644 Brassica carinata HOM05D004018 ORTHO05D004408 9.2e-67 258.8 554 37.2
Glyma.02G148900 Glycine max HOM05D004018 ORTHO05D004408 1.2e-66 258.5 599 35.4
Haze_04739 Corylus avellana HOM05D004018 ORTHO05D004408 2.0e-66 257.7 655 35.9
DCAR_002748 Daucus carota HOM05D004018 ORTHO05D004408 2.7e-66 257.3 600 35.8
CARHR002590 Cardamine hirsuta HOM05D004018 ORTHO05D004408 4.5e-66 256.5 576 36.8
C05p01820 Brassica napus HOM05D003188 ORTHO05D003602 5.9e-66 256.1 548 37.2
SGA_v2.0_scaffold11G05799 Striga asiatica HOM05D004018 ORTHO05D004408 1.0e-65 255.4 540 37.4
Glyma.10G025000 Glycine max HOM05D004018 ORTHO05D004408 6.6e-65 252.7 452 39.8
Cpa.g.sc837.2 Carica papaya HOM05D004018 ORTHO05D004408 8.6e-65 252.3 269 56.9
DCAR_018413 Daucus carota HOM05D004018 ORTHO05D004408 8.6e-65 252.3 606 35.5
MD11G1289200 Malus domestica HOM05D004018 ORTHO05D004408 1.1e-64 251.9 297 53.2
arahy.Tifrunner.gnm1.ann1.6Q7DFN Arachis hypogaea HOM05D004018 ORTHO05D004408 1.9e-64 251.1 669 34.5
BolC5t28960H Brassica oleracea HOM05D003188 ORTHO05D003602 2.5e-64 250.8 562 36.1
ECA248G1820 Erigeron canadensis HOM05D004018 ORTHO05D004408 3.3e-64 250.4 595 37.5
Sed0023986 Sechium edule HOM05D004018 ORTHO05D004408 4.3e-64 250.0 625 34.4
Aa31LG1G9250 Aethionema arabicum HOM05D004018 ORTHO05D004408 2.1e-63 247.7 570 35.6
CiPaw.07G093900 Carya illinoinensis HOM05D004018 ORTHO05D004408 5.2e-62 243.0 650 35.5
FAN15G3429 Fragaria x ananassa HOM05D000644 ORTHO05D004408 5.2e-62 243.0 594 35.0
ClCG09G006910 Citrullus lanatus HOM05D004018 ORTHO05D004408 6.8e-62 242.7 604 36.1
Thhalv10028568m.g Eutrema salsugineum HOM05D004018 ORTHO05D004408 1.5e-61 241.5 570 36.7
BolC2t09981H Brassica oleracea HOM05D004018 ORTHO05D004408 5.7e-61 239.6 539 35.4
Lalb_Chr02g0142861 Lupinus albus HOM05D004018 ORTHO05D004408 9.8e-61 238.8 615 34.3
arahy.Tifrunner.gnm1.ann1.BX9H6P Arachis hypogaea HOM05D004018 ORTHO05D004408 1.3e-60 238.4 672 33.5
BolC3t16038H Brassica oleracea HOM05D004018 ORTHO05D004408 2.9e-60 237.3 567 37.4
HanXRQChr11g0327641 Helianthus annuus HOM05D004018 ORTHO05D004408 2.9e-60 237.3 513 36.8
Sed0026091 Sechium edule HOM05D004018 ORTHO05D004408 4.9e-60 236.5 576 35.9
TWI59G1189 Tripterygium wilfordii HOM05D004018 ORTHO05D004408 1.1e-59 235.3 687 33.5
MELO3C015856.2 Cucumis melo HOM05D004018 ORTHO05D004408 2.4e-59 234.2 596 34.2
CiPaw.08G103600 Carya illinoinensis HOM05D004018 ORTHO05D004408 4.1e-59 233.4 404 40.3
A10p01840 Brassica napus HOM05D003188 ORTHO05D003602 7.0e-59 232.6 566 35.9
BcaC05g24546 Brassica carinata HOM05D004018 ORTHO05D004408 1.6e-58 231.5 269 52.0
BraA10t42458Z Brassica rapa HOM05D004018 ORTHO05D004408 1.6e-58 231.5 565 35.9
C03p37460 Brassica napus HOM05D004018 ORTHO05D004408 2.0e-58 231.1 564 37.1
A03p30760 Brassica napus HOM05D004018 ORTHO05D004408 3.5e-58 230.3 553 36.5
Gohir.D08G203601 Gossypium hirsutum HOM05D004018 ORTHO05D004408 7.8e-58 229.2 279 50.2
Lj5g0010123 Lotus japonicus HOM05D004018 ORTHO05D004408 2.3e-57 227.6 628 33.6
HanXRQChr01g0002351 Helianthus annuus HOM05D004018 ORTHO05D004408 8.6e-57 225.7 595 35.3
Hund28856 Selenicereus undatus HOM05D004018 ORTHO05D004408 8.6e-57 225.7 278 51.1
Hund28858 Selenicereus undatus HOM05D004018 ORTHO05D004408 8.6e-57 225.7 278 51.1
BraA03t12255Z Brassica rapa HOM05D004018 ORTHO05D004408 1.5e-56 224.9 553 34.9
Eucgr.K03388 Eucalyptus grandis HOM05D004018 ORTHO05D004408 1.9e-56 224.6 613 34.3
PGR044G1283 Punica granatum HOM05D004018 ORTHO05D004408 7.3e-56 222.6 608 32.4
AUR62033708 Chenopodium quinoa HOM05D004018 ORTHO05D004408 1.1e-51 208.8 636 30.0
AUR62036814 Chenopodium quinoa HOM05D004018 ORTHO05D004408 1.1e-51 208.8 638 30.7
TAR362G1233 Trochodendron aralioides HOM05D004018 ORTHO05D004408 2.7e-50 204.1 503 35.6
DCAR_012464 Daucus carota HOM05D000644 ORTHO05D000504 6.0e-50 203.0 606 33.3
Sc24g0004120 Simmondsia chinensis HOM05D004018 ORTHO05D004408 6.6e-49 199.5 446 35.9
CsaV3_7G028620 Cucumis sativus L. HOM05D004018 ORTHO05D004408 2.5e-48 197.6 577 33.1
ATR0626G273 Amborella trichopoda HOM05D004018 ORTHO05D004408 3.6e-47 193.7 545 32.3
HPP92_003154 Vanilla planifolia HOM05D004018 ORTHO05D004408 4.7e-47 193.4 602 31.4
Atru.chr12.465 Acer truncatum HOM05D004018 ORTHO05D004408 1.1e-46 192.2 214 54.2
Atru.chr12.487 Acer truncatum HOM05D004018 ORTHO05D004408 1.8e-46 191.4 214 53.7
Zm00001eb349530 Zea mays HOM05D004018 ORTHO05D004408 9.8e-45 185.7 614 32.2
CDE05G3031 Ceratophyllum demersum HOM05D004018 ORTHO05D004408 7.1e-43 179.5 544 32.5
EL10Ac7g17209 Beta vulgaris HOM05D004018 ORTHO05D004408 1.6e-42 178.3 590 30.7
Lsat_1_v5_gn_5_187400 Lactuca sativa HOM05D004018 ORTHO05D004408 1.6e-42 178.3 556 32.6
Zm00001eb287880 Zea mays HOM05D004018 ORTHO05D004408 1.6e-42 178.3 287 42.2
MBI17_g12005_MAGBIO Magnolia biondii HOM05D004018 ORTHO05D004408 1.7e-41 174.9 211 50.7
Dinv11250 Davidia involucrata HOM05D004018 ORTHO05D004408 2.6e-37 161.0 443 33.2
ECA236G3018 Erigeron canadensis HOM05D004018 ORTHO05D004408 7.6e-37 159.5 236 41.9
CARHR005950 Cardamine hirsuta HOM05D004018 ORTHO05D004408 1.9e-35 154.8 551 32.3
Os10g0315400 Oryza sativa ssp. japonica HOM05D004018 ORTHO05D004408 1.9e-35 154.8 224 43.8
Dinv11249 Davidia involucrata HOM05D004018 ORTHO05D004408 2.4e-35 154.5 177 56.5
Sabra14G0104800 Salix brachista HOM05D004018 ORTHO05D004408 4.1e-35 153.7 475 32.6
Sabra02G0167700 Salix brachista HOM05D004018 ORTHO05D004408 5.4e-35 153.3 438 32.4
unitig_0.g1008 Utricularia gibba HOM05D004018 ORTHO05D004408 6.0e-34 149.8 562 29.2
Pp3c15_12690 Physcomitrium patens HOM05D004018 ORTHO05D004408 1.9e-32 144.8 316 33.2
HanXRQChr04g0118801 Helianthus annuus HOM05D004018 ORTHO05D004408 1.8e-30 138.3 248 40.3
ECA236G2305 Erigeron canadensis HOM05D004018 ORTHO05D004408 4.6e-26 123.6 179 45.8
Mapoly0005s0053 Marchantia polymorpha HOM05D004018 ORTHO05D004408 1.9e-24 118.2 480 26.9
Ah.08g213040 Amaranthus hybridus HOM05D004018 ORTHO05D004408 3.1e-22 110.9 120 54.2
Pp3c9_12210 Physcomitrium patens HOM05D004018 ORTHO05D004408 3.4e-21 107.5 493 25.8
BcaC03g15959 Brassica carinata HOM05D004018 ORTHO05D004408 3.2e-19 100.9 133 46.6
HanXRQChr03g0063751 Helianthus annuus HOM05D004018 ORTHO05D004408 7.1e-19 99.8 240 35.0
SMO364G0006 Selaginella moellendorffii HOM05D004018 ORTHO05D004408 1.3e-17 95.5 292 29.8
HanXRQChr03g0063801 Helianthus annuus HOM05D004018 ORTHO05D004408 1.8e-17 95.1 188 37.8
ECA236G2562 Erigeron canadensis HOM05D004018 ORTHO05D004408 1.1e-16 92.4 242 34.7
C02p37230 Brassica napus HOM05D004018 ORTHO05D004408 1.1e-14 85.9 90 52.2
MD11G1124600 Malus domestica HOM05D004018 ORTHO05D004408 1.4e-14 85.5 82 58.5
MBI05_g27108_MAGBIO Magnolia biondii HOM05D004018 ORTHO05D004408 3.8e-12 77.4 76 60.5
BolC2t09733H Brassica oleracea HOM05D004018 ORTHO05D004408 1.4e-11 75.5 56 64.3
ECA247G3795 Erigeron canadensis HOM05D004018 ORTHO05D004408 5.5e-11 73.6 203 30.0
AagrBONN_evm.TU.Sc2ySwM_228.3859 Anthoceros agrestis HOM05D004018 ORTHO05D004408 1.2e-10 72.4 486 24.5
SEGI_03888 Sequoiadendron giganteum HOM05D004018 ORTHO05D004408 1.3e-09 68.9 167 35.3
Os05g0394900 Oryza sativa ssp. japonica HOM05D004018 ORTHO05D004408 3.0e-09 67.8 130 37.7
BcaC05g24545 Brassica carinata HOM05D001026 ORTHO05D007776 6.7e-09 66.6 68 54.4
PGR031G1662 Punica granatum HOM05D004018 ORTHO05D004408 1.3e-07 62.4 102 44.1
Hma1.2p1_0118F.1_g056525 Hydrangea macrophylla HOM05D004018 ORTHO05D004408 4.0e-06 57.4 52 51.9
Hma1.2p1_0118F.1_g056540 Hydrangea macrophylla HOM05D004018 ORTHO05D004408 4.0e-06 57.4 52 51.9
Hund17963 Selenicereus undatus HOM05D004018 ORTHO05D004408 5.3e-06 57.0 52 51.9
C03p61050 Brassica napus HOM05D008017 ORTHO05D009829 9.0e-06 56.2 53 52.8
BolC3t18367H Brassica oleracea HOM05D008017 ORTHO05D009829 9.0e-06 56.2 53 52.8


User provided reference genes

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